Wall clock time and date at job start Wed Apr 1 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47244 * 2 1 4 4 H 1.08997 * 109.49122 * 304.93553 * 3 2 1 5 5 C 1.53192 * 109.49712 * 64.99696 * 3 2 1 6 6 N 1.46931 * 108.77040 * 174.58775 * 5 3 2 7 7 C 1.34784 * 120.62757 * 126.37050 * 6 5 3 8 8 O 1.21274 * 119.99897 * 359.72693 * 7 6 5 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47004 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47478 * 179.97438 * 11 10 9 13 13 C 1.38229 * 119.61481 * 124.99867 * 12 11 10 14 14 C 1.38630 * 119.15814 * 179.97438 * 13 12 11 15 15 C 1.38666 * 118.42166 * 0.02562 * 14 13 12 16 16 C 1.38189 * 119.16435 * 359.97438 * 15 14 13 17 17 N 1.31849 * 119.62047 * 304.73098 * 12 11 10 18 18 C 1.46918 * 118.74146 * 306.64550 * 6 5 3 19 19 C 1.52761 * 109.01190 * 53.30689 * 18 6 5 20 20 C 1.53036 * 109.49740 * 184.83890 * 3 2 1 21 21 H 1.09000 * 109.46183 * 58.67647 * 20 3 2 22 22 N 1.46498 * 109.45987 * 298.70257 * 20 3 2 23 23 C 1.36933 * 120.00020 * 155.00504 * 22 20 3 24 24 H 1.08000 * 120.00256 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00308 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00626 * 179.97438 * 25 23 22 27 27 Si 1.86806 * 119.99659 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47082 * 90.00039 * 27 25 23 29 29 H 1.48500 * 109.47170 * 210.00078 * 27 25 23 30 30 H 1.48506 * 109.47256 * 330.00338 * 27 25 23 31 31 H 1.09002 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47265 * 300.00381 * 1 2 3 33 33 H 1.08999 * 109.47476 * 59.99928 * 1 2 3 34 34 H 1.08991 * 109.47292 * 239.99650 * 2 1 3 35 35 H 1.09003 * 109.47158 * 119.99405 * 2 1 3 36 36 H 1.09000 * 109.58535 * 54.80593 * 5 3 2 37 37 H 1.09001 * 109.70425 * 294.44308 * 5 3 2 38 38 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 39 39 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 40 40 H 1.08997 * 109.47244 * 300.00535 * 10 9 7 41 41 H 1.09002 * 109.46787 * 59.99910 * 10 9 7 42 42 H 1.08997 * 109.47365 * 300.00556 * 11 10 9 43 43 H 1.09004 * 109.46747 * 59.99765 * 11 10 9 44 44 H 1.07998 * 120.42127 * 359.96028 * 13 12 11 45 45 H 1.08001 * 120.78901 * 180.02562 * 14 13 12 46 46 H 1.08005 * 120.42100 * 180.02562 * 15 14 13 47 47 H 1.07998 * 119.61652 * 179.97438 * 16 15 14 48 48 H 1.08998 * 109.59258 * 173.14856 * 18 6 5 49 49 H 1.09001 * 109.58913 * 293.56820 * 18 6 5 50 50 H 1.08997 * 109.56476 * 185.55091 * 19 18 6 51 51 H 1.09005 * 109.38339 * 65.51713 * 19 18 6 52 52 H 0.97003 * 120.00107 * 334.99489 * 22 20 3 53 53 H 0.96995 * 120.00477 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9815 -0.8424 5 6 1.6350 2.1280 1.3087 6 7 2.2415 3.4657 1.3492 7 6 1.4815 4.5581 1.5626 8 8 0.2843 4.4428 1.7186 9 6 2.1185 5.9232 1.6019 10 6 1.0427 6.9809 1.8566 11 6 1.6894 8.3669 1.8972 12 6 0.6297 9.4087 2.1474 13 6 0.7678 10.2819 3.2100 14 6 -0.2125 11.2369 3.4312 15 6 -1.3000 11.2777 2.5718 16 6 -1.3698 10.3719 1.5306 17 7 -0.4157 9.4801 1.3472 18 6 3.6913 3.5905 1.1465 19 6 4.0741 2.8879 -0.1549 20 6 3.5655 1.4449 -0.1217 21 1 3.8574 0.9361 -1.0404 22 7 4.1479 0.7485 1.0281 23 6 5.3860 0.1727 0.9246 24 1 5.9330 0.2317 -0.0048 25 6 5.9382 -0.4867 2.0141 26 7 7.1280 -1.0406 1.9146 27 14 4.9924 -0.5881 3.6219 28 1 4.1497 -1.8108 3.6242 29 1 5.9491 -0.6441 4.7563 30 1 4.1265 0.6101 3.7633 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.9908 1.5398 2.1546 37 1 0.5497 2.2173 1.3563 38 1 2.8578 5.9564 2.4022 39 1 2.6063 6.1242 0.6481 40 1 0.3037 6.9477 1.0561 41 1 0.5545 6.7802 2.8103 42 1 2.4282 8.3999 2.6979 43 1 2.1780 8.5678 0.9437 44 1 1.6282 10.2208 3.8598 45 1 -0.1311 11.9326 4.2533 46 1 -2.0822 12.0088 2.7140 47 1 -2.2138 10.3969 0.8572 48 1 3.9624 4.6444 1.0846 49 1 4.2182 3.1240 1.9789 50 1 5.1585 2.8892 -0.2650 51 1 3.6224 3.4136 -0.9962 52 1 3.6566 0.6953 1.8628 53 1 7.5139 -1.5010 2.6760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754467811.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:00 Heat of formation + Delta-G solvation = -25.065628 kcal Electronic energy + Delta-G solvation = -30446.322919 eV Core-core repulsion = 26509.533785 eV Total energy + Delta-G solvation = -3936.789134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.46079 -41.03751 -39.37023 -36.00529 -35.92988 -35.37038 -33.55272 -33.27990 -32.42694 -31.45861 -30.25588 -28.51106 -26.39877 -25.25137 -24.93061 -24.47546 -23.76092 -22.15773 -21.99910 -20.72369 -19.86628 -19.49554 -18.14178 -17.67678 -17.23108 -17.00374 -16.79279 -16.53546 -16.24823 -15.98272 -15.67978 -15.42441 -15.08124 -14.92291 -14.85517 -14.54500 -14.38630 -14.23917 -14.12987 -13.91769 -13.77489 -13.31801 -13.10483 -12.98434 -12.89249 -12.85906 -12.63247 -12.54224 -12.44241 -12.27719 -12.03879 -11.99034 -11.86158 -11.67266 -11.61131 -11.53198 -11.15135 -10.94917 -10.76995 -10.71898 -10.28222 -9.84117 -9.61266 -9.21805 -7.97369 -5.27731 0.21684 0.41251 1.36164 1.38103 1.44555 1.66043 2.04531 2.49350 2.89223 3.34724 3.42336 3.52888 3.62191 3.76315 3.79810 3.95643 4.01624 4.04938 4.12729 4.19002 4.24174 4.29422 4.30640 4.33488 4.37792 4.42862 4.53235 4.59174 4.65202 4.67671 4.72943 4.75354 4.81935 4.86826 4.89993 4.95687 4.99613 5.04371 5.15550 5.16777 5.19777 5.23873 5.30515 5.31703 5.34881 5.37035 5.43389 5.48104 5.66631 5.85424 5.85966 6.26773 6.48880 7.12584 7.13370 7.19827 7.90503 8.08810 9.24461 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.002250 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.455160 B =12443.033292 C =13299.857010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.087 0.913 5 C 0.119 3.881 6 N -0.607 5.607 7 C 0.508 3.492 8 O -0.590 6.590 9 C -0.133 4.133 10 C -0.082 4.082 11 C -0.065 4.065 12 C 0.109 3.891 13 C -0.178 4.178 14 C -0.080 4.080 15 C -0.181 4.181 16 C 0.080 3.920 17 N -0.516 5.516 18 C 0.115 3.885 19 C -0.144 4.144 20 C 0.176 3.824 21 H 0.049 0.951 22 N -0.742 5.742 23 C -0.209 4.209 24 H 0.063 0.937 25 C -0.060 4.060 26 N -0.983 5.983 27 Si 0.939 3.061 28 H -0.285 1.285 29 H -0.300 1.300 30 H -0.258 1.258 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.167 0.833 48 H 0.114 0.886 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.361 0.639 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 24.974 0.185 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.106 0.894 5 C -0.004 4.004 6 N -0.339 5.339 7 C 0.298 3.702 8 O -0.471 6.471 9 C -0.172 4.172 10 C -0.121 4.121 11 C -0.103 4.103 12 C -0.028 4.028 13 C -0.197 4.197 14 C -0.106 4.106 15 C -0.201 4.201 16 C -0.076 4.076 17 N -0.226 5.226 18 C -0.007 4.007 19 C -0.184 4.184 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.385 5.385 23 C -0.340 4.340 24 H 0.081 0.919 25 C -0.251 4.251 26 N -0.635 5.635 27 Si 0.768 3.232 28 H -0.212 1.212 29 H -0.227 1.227 30 H -0.183 1.183 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.177 0.823 47 H 0.185 0.815 48 H 0.132 0.868 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.195 0.805 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.311 24.270 -0.525 28.701 hybrid contribution -0.066 -0.301 1.778 1.804 sum -15.377 23.969 1.252 28.505 Atomic orbital electron populations 1.21793 0.94734 1.02003 1.01916 1.21406 0.96161 0.95246 1.02045 1.21688 0.95498 0.96574 0.97624 0.89443 1.21532 0.98925 0.82647 0.97315 1.48262 1.09057 1.06290 1.70269 1.21389 0.86482 0.87423 0.74856 1.90648 1.16800 1.87389 1.52235 1.21771 0.99862 0.89164 1.06393 1.21057 0.96968 0.92470 1.01602 1.20608 0.94742 0.90394 1.04556 1.21596 0.93824 0.95818 0.91566 1.22327 1.01687 0.96678 0.99048 1.22015 0.92695 0.97106 0.98737 1.22462 1.00298 1.01058 0.96279 1.23156 0.96761 0.90775 0.96935 1.67453 1.02758 1.22852 1.29512 1.21676 0.78330 1.02518 0.98170 1.22297 1.01565 0.97181 0.97364 1.20433 0.90932 0.91736 0.90133 0.93265 1.42802 1.18153 1.65943 1.11642 1.18997 0.92949 1.24513 0.97534 0.91911 1.25277 0.97490 1.01413 1.00937 1.69845 1.18454 1.43596 1.31601 0.85663 0.78098 0.78407 0.81044 1.21202 1.22689 1.18304 0.92054 0.93129 0.91960 0.91697 0.93405 0.93489 0.89660 0.86529 0.86281 0.92824 0.93594 0.87724 0.89030 0.82644 0.82146 0.82313 0.81538 0.86750 0.92701 0.91401 0.90282 0.80486 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.67 71.98 0.70 -2.89 16 2 C -0.11 -3.24 5.19 30.59 0.16 -3.08 16 3 C -0.09 -2.77 2.14 -10.72 -0.02 -2.79 16 4 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 5 C 0.12 3.69 5.03 86.36 0.43 4.12 16 6 N -0.61 -17.23 2.98 -819.75 -2.44 -19.67 16 7 C 0.51 14.31 7.70 87.65 0.67 14.98 16 8 O -0.59 -21.20 15.39 -3.01 -0.05 -21.25 16 9 C -0.13 -2.47 4.05 29.85 0.12 -2.35 16 10 C -0.08 -1.71 4.36 30.59 0.13 -1.58 16 11 C -0.07 -0.98 5.61 29.85 0.17 -0.82 16 12 C 0.11 2.02 6.17 42.55 0.26 2.28 16 13 C -0.18 -2.46 9.71 22.36 0.22 -2.24 16 14 C -0.08 -0.91 10.18 22.47 0.23 -0.69 16 15 C -0.18 -2.21 10.11 22.36 0.23 -1.98 16 16 C 0.08 1.35 11.18 84.67 0.95 2.30 16 17 N -0.52 -11.32 9.89 -183.89 -1.82 -13.14 16 18 C 0.12 3.03 6.06 86.22 0.52 3.55 16 19 C -0.14 -4.11 5.76 30.53 0.18 -3.93 16 20 C 0.18 6.01 2.53 45.02 0.11 6.12 16 21 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 22 N -0.74 -31.60 3.53 -322.82 -1.14 -32.74 16 23 C -0.21 -11.07 10.41 84.03 0.87 -10.20 16 24 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 25 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 26 N -0.98 -61.41 13.97 21.65 0.30 -61.10 16 27 Si 0.94 44.93 27.73 68.60 1.90 46.83 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 29 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 30 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.26 6.70 -2.38 -0.02 1.24 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.61 7.69 -2.39 -0.02 1.59 16 36 H 0.05 1.61 6.64 -2.39 -0.02 1.59 16 37 H 0.09 2.72 5.72 -2.39 -0.01 2.71 16 38 H 0.12 1.67 7.95 -2.38 -0.02 1.65 16 39 H 0.12 1.68 7.68 -2.39 -0.02 1.67 16 40 H 0.05 1.41 7.91 -2.39 -0.02 1.39 16 41 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 42 H 0.10 1.03 7.87 -2.39 -0.02 1.01 16 43 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.16 1.34 7.95 -2.91 -0.02 1.31 16 45 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 46 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 47 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 48 H 0.11 2.11 5.94 -2.39 -0.01 2.09 16 49 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 52 H 0.36 15.45 3.80 -92.71 -0.35 15.10 16 53 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.27 412.90 3.63 -70.63 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.48 Total: 32.56 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.40 Total: -2.13 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -5.10 Total: -126.65 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -74.27 3.63 -70.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754467811.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.566 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds