Wall clock time and date at job start Wed Apr 1 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 H 1.09000 * 109.52160 * 54.92083 * 3 2 1 5 5 C 1.53191 * 109.49978 * 294.83808 * 3 2 1 6 6 N 1.46920 * 108.77616 * 185.41207 * 5 3 2 7 7 C 1.34781 * 120.63026 * 233.58959 * 6 5 3 8 8 O 1.21280 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99743 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46816 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.38230 * 119.61727 * 124.73111 * 12 11 10 14 14 C 1.38632 * 119.15927 * 179.75648 * 13 12 11 15 15 C 1.38676 * 118.41981 * 0.50481 * 14 13 12 16 16 C 1.38176 * 119.16425 * 359.73125 * 15 14 13 17 17 N 1.31858 * 119.61861 * 305.00103 * 12 11 10 18 18 C 1.46928 * 118.73706 * 53.61307 * 6 5 3 19 19 C 1.53184 * 108.77408 * 306.38660 * 18 6 5 20 20 C 1.53039 * 109.31381 * 54.63954 * 19 18 6 21 21 H 1.09003 * 109.45459 * 178.62011 * 20 19 18 22 22 N 1.46502 * 109.46009 * 58.65178 * 20 19 18 23 23 C 1.36930 * 120.00159 * 84.93455 * 22 20 19 24 24 H 1.08000 * 119.99841 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00182 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99887 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 89.99941 * 27 25 23 29 29 H 1.48503 * 109.47261 * 330.00122 * 27 25 23 30 30 H 1.48500 * 109.47454 * 210.00115 * 27 25 23 31 31 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47473 * 299.99525 * 1 2 3 33 33 H 1.09006 * 109.47343 * 60.00012 * 1 2 3 34 34 H 1.09005 * 109.47064 * 240.00606 * 2 1 3 35 35 H 1.08992 * 109.47831 * 120.00199 * 2 1 3 36 36 H 1.08999 * 109.58873 * 305.20441 * 5 3 2 37 37 H 1.09000 * 109.58114 * 65.48250 * 5 3 2 38 38 H 1.08995 * 109.46908 * 299.99907 * 9 7 6 39 39 H 1.09002 * 109.46694 * 60.00378 * 9 7 6 40 40 H 1.09004 * 109.47022 * 300.00160 * 10 9 7 41 41 H 1.08994 * 109.46785 * 59.99937 * 10 9 7 42 42 H 1.08993 * 109.47531 * 300.00409 * 11 10 9 43 43 H 1.09000 * 109.46916 * 59.99954 * 11 10 9 44 44 H 1.07998 * 120.41886 * 359.97438 * 13 12 11 45 45 H 1.07996 * 120.78883 * 180.21952 * 14 13 12 46 46 H 1.08006 * 120.41364 * 179.71200 * 15 14 13 47 47 H 1.08004 * 119.61972 * 179.97438 * 16 15 14 48 48 H 1.09002 * 109.58595 * 66.17799 * 18 6 5 49 49 H 1.09006 * 109.58324 * 186.45689 * 18 6 5 50 50 H 1.09003 * 109.50550 * 294.68732 * 19 18 6 51 51 H 1.09000 * 109.49658 * 174.58754 * 19 18 6 52 52 H 0.97008 * 119.99482 * 264.93511 * 22 20 19 53 53 H 0.96993 * 120.00105 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6385 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5565 -1.5680 8 8 0.2895 4.4405 -1.7323 9 6 2.1227 5.9217 -1.6069 10 6 1.0477 6.9789 -1.8678 11 6 1.6945 8.3649 -1.9067 12 6 0.6359 9.4060 -2.1643 13 6 0.4892 10.4630 -1.2857 14 6 -0.4843 11.4181 -1.5346 15 6 -1.2844 11.2680 -2.6573 16 6 -1.0825 10.1823 -3.4877 17 7 -0.1432 9.2953 -3.2224 18 6 3.6951 3.5889 -1.1498 19 6 4.0735 2.8883 0.1588 20 6 3.5652 1.4451 0.1257 21 1 3.8546 0.9371 1.0457 22 7 4.1507 0.7477 -1.0219 23 6 5.3884 0.1720 -0.9146 24 1 5.9329 0.2318 0.0162 25 6 5.9430 -0.4893 -2.0018 26 7 5.2792 -0.5626 -3.1360 27 14 7.6318 -1.2740 -1.8557 28 1 7.4872 -2.6774 -1.3918 29 1 8.4491 -0.5114 -0.8781 30 1 8.3019 -1.2573 -3.1808 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.9963 1.5378 -2.1549 37 1 0.5530 2.2138 -1.3596 38 1 2.6073 6.1238 -0.6518 39 1 2.8645 5.9538 -2.4048 40 1 0.5635 6.7765 -2.8232 41 1 0.3056 6.9468 -1.0703 42 1 2.1785 8.5670 -0.9513 43 1 2.4370 8.3971 -2.7040 44 1 1.1271 10.5456 -0.4182 45 1 -0.6195 12.2566 -0.8675 46 1 -2.0558 11.9906 -2.8795 47 1 -1.7017 10.0579 -4.3639 48 1 4.2207 3.1190 -1.9812 49 1 3.9672 4.6430 -1.0944 50 1 3.6191 3.4148 0.9981 51 1 5.1576 2.8895 0.2718 52 1 3.6614 0.6937 -1.8578 53 1 4.4024 -0.1549 -3.2121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754467814.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:15 Heat of formation + Delta-G solvation = -28.119019 kcal Electronic energy + Delta-G solvation = -30376.916706 eV Core-core repulsion = 26439.995167 eV Total energy + Delta-G solvation = -3936.921539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.48322 -41.04678 -39.38589 -36.11016 -35.99504 -35.48141 -33.45399 -33.28729 -32.44397 -30.87982 -30.08981 -28.46640 -26.26930 -25.42132 -25.13602 -24.49213 -23.78792 -22.26542 -22.02368 -20.78996 -19.81042 -19.16869 -18.23951 -17.69103 -17.28284 -17.03141 -16.87759 -16.65218 -16.28059 -15.93707 -15.56267 -15.46539 -15.20093 -15.02880 -14.86109 -14.59714 -14.41881 -14.20460 -14.09691 -13.92123 -13.63867 -13.26922 -13.10359 -12.98613 -12.83218 -12.70320 -12.59695 -12.52452 -12.29964 -12.18213 -12.02567 -11.87682 -11.70452 -11.67626 -11.63943 -11.43454 -11.05024 -10.90997 -10.77386 -10.73267 -10.28657 -9.85057 -9.63509 -9.00798 -8.29123 -5.22221 0.20975 0.40962 1.60926 1.62007 1.70515 1.84086 2.00667 2.75745 2.88375 3.41109 3.47618 3.49614 3.72302 3.74502 3.77371 3.94341 3.98830 4.03157 4.09737 4.16705 4.21719 4.27398 4.28916 4.29188 4.34153 4.37767 4.49786 4.55144 4.61615 4.64187 4.68956 4.73280 4.77407 4.84123 4.85941 4.92087 4.96982 4.98353 5.09285 5.14202 5.15443 5.18863 5.25294 5.30746 5.31971 5.33586 5.40861 5.43281 5.61844 5.70840 5.85434 6.45732 6.57039 7.12454 7.15764 7.17474 8.08833 8.21716 9.22047 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.002122 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.017911 B =13194.908887 C =14154.758318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.125 3.875 6 N -0.605 5.605 7 C 0.506 3.494 8 O -0.591 6.591 9 C -0.131 4.131 10 C -0.082 4.082 11 C -0.065 4.065 12 C 0.108 3.892 13 C -0.175 4.175 14 C -0.079 4.079 15 C -0.181 4.181 16 C 0.079 3.921 17 N -0.519 5.519 18 C 0.120 3.880 19 C -0.141 4.141 20 C 0.176 3.824 21 H 0.044 0.956 22 N -0.736 5.736 23 C -0.312 4.312 24 H 0.067 0.933 25 C -0.107 4.107 26 N -0.980 5.980 27 Si 1.125 2.875 28 H -0.292 1.292 29 H -0.271 1.271 30 H -0.299 1.299 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.165 0.835 48 H 0.045 0.955 49 H 0.114 0.886 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.358 0.642 53 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 24.057 8.225 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.001 3.999 6 N -0.337 5.337 7 C 0.297 3.703 8 O -0.472 6.472 9 C -0.170 4.170 10 C -0.121 4.121 11 C -0.103 4.103 12 C -0.029 4.029 13 C -0.195 4.195 14 C -0.104 4.104 15 C -0.200 4.200 16 C -0.078 4.078 17 N -0.229 5.229 18 C -0.002 4.002 19 C -0.182 4.182 20 C 0.067 3.933 21 H 0.062 0.938 22 N -0.379 5.379 23 C -0.444 4.444 24 H 0.085 0.915 25 C -0.298 4.298 26 N -0.629 5.629 27 Si 0.952 3.048 28 H -0.219 1.219 29 H -0.196 1.196 30 H -0.226 1.226 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.177 0.823 45 H 0.181 0.819 46 H 0.177 0.823 47 H 0.182 0.818 48 H 0.064 0.936 49 H 0.132 0.868 50 H 0.098 0.902 51 H 0.085 0.915 52 H 0.191 0.809 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.494 22.442 7.002 24.997 hybrid contribution -1.548 0.864 0.512 1.845 sum -10.041 23.307 7.514 26.467 Atomic orbital electron populations 1.21781 0.94627 1.01996 1.01881 1.21338 0.96185 0.95331 1.01485 1.21666 0.95870 0.96314 0.97313 0.89596 1.21429 0.98562 0.82632 0.97236 1.48237 1.09027 1.06246 1.70178 1.21446 0.86501 0.87504 0.74851 1.90645 1.16960 1.87428 1.52150 1.21765 0.99822 0.89104 1.06347 1.21057 0.96742 0.92613 1.01664 1.20609 0.94839 0.90520 1.04307 1.21597 0.95331 0.95445 0.90522 1.22332 1.00605 0.95224 1.01315 1.22029 0.93124 0.98670 0.96623 1.22462 1.01692 0.99802 0.96072 1.23136 0.94472 0.90483 0.99668 1.67458 1.06093 1.29362 1.20024 1.21693 0.78305 1.02263 0.97979 1.22370 1.01417 0.97354 0.97018 1.20402 0.90835 0.91766 0.90266 0.93834 1.42594 1.18571 1.65551 1.11166 1.20332 0.95387 1.29578 0.99092 0.91510 1.26943 1.08525 1.01693 0.92681 1.70971 1.14557 1.50015 1.27358 0.82624 0.71645 0.75479 0.75056 1.21941 1.19633 1.22639 0.92061 0.91667 0.93378 0.94209 0.91938 0.94183 0.89983 0.85658 0.87256 0.93389 0.93074 0.87234 0.89457 0.82349 0.81937 0.82273 0.81757 0.93630 0.86766 0.90202 0.91476 0.80874 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.67 71.98 0.70 -3.25 16 2 C -0.11 -3.44 5.19 30.59 0.16 -3.28 16 3 C -0.09 -2.97 2.14 -10.71 -0.02 -2.99 16 4 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 5 C 0.12 4.33 5.03 86.36 0.43 4.76 16 6 N -0.61 -18.99 2.97 -818.91 -2.43 -21.42 16 7 C 0.51 15.56 7.70 87.66 0.67 16.23 16 8 O -0.59 -22.76 15.40 -3.03 -0.05 -22.80 16 9 C -0.13 -2.70 4.05 29.85 0.12 -2.58 16 10 C -0.08 -1.83 4.36 30.60 0.13 -1.70 16 11 C -0.07 -1.05 5.61 29.85 0.17 -0.88 16 12 C 0.11 2.10 6.18 42.55 0.26 2.36 16 13 C -0.18 -2.44 9.71 22.36 0.22 -2.22 16 14 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 15 C -0.18 -2.31 10.11 22.36 0.23 -2.08 16 16 C 0.08 1.43 11.18 84.67 0.95 2.37 16 17 N -0.52 -12.18 9.88 -183.89 -1.82 -14.00 16 18 C 0.12 3.50 6.08 86.36 0.53 4.02 16 19 C -0.14 -4.26 5.78 30.67 0.18 -4.09 16 20 C 0.18 6.43 2.53 45.02 0.11 6.55 16 21 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 22 N -0.74 -34.23 3.72 -322.81 -1.20 -35.43 16 23 C -0.31 -16.49 9.93 84.03 0.83 -15.65 16 24 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 25 C -0.11 -6.05 5.50 84.86 0.47 -5.58 16 26 N -0.98 -60.51 13.70 21.65 0.30 -60.22 16 27 Si 1.13 51.24 29.92 68.60 2.05 53.29 16 28 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 29 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 30 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.36 6.70 -2.38 -0.02 1.34 16 34 H 0.04 1.55 7.70 -2.38 -0.02 1.53 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.60 6.64 -2.39 -0.02 1.59 16 37 H 0.08 2.93 5.73 -2.39 -0.01 2.91 16 38 H 0.13 1.79 7.69 -2.39 -0.02 1.77 16 39 H 0.11 1.97 7.94 -2.39 -0.02 1.95 16 40 H 0.05 1.38 7.90 -2.38 -0.02 1.36 16 41 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.11 1.08 7.87 -2.39 -0.02 1.06 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.16 1.29 7.95 -2.91 -0.02 1.26 16 45 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 46 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 48 H 0.05 1.68 7.74 -2.39 -0.02 1.66 16 49 H 0.11 2.37 5.93 -2.38 -0.01 2.36 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.36 18.04 4.77 -92.70 -0.44 17.60 16 53 H 0.24 14.96 6.77 -92.71 -0.63 14.33 16 Total: -1.00 -74.97 414.35 3.80 -71.17 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.59 Total: 38.11 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 6.36 Total: -8.70 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.15 Total: -131.07 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -74.97 3.80 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754467814.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.050 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds