Wall clock time and date at job start Wed Apr 1 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46658 * 2 1 4 4 C 1.53002 * 109.46658 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47301 * 305.00233 * 4 3 2 6 6 C 1.50704 * 109.46910 * 185.00320 * 4 3 2 7 7 O 1.21287 * 119.99876 * 240.00058 * 6 4 3 8 8 N 1.34769 * 120.00487 * 59.99794 * 6 4 3 9 9 C 1.46495 * 120.00635 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.45824 * 60.02548 * 9 8 6 11 11 C 1.53047 * 109.45676 * 300.07194 * 9 8 6 12 12 C 1.53189 * 109.31028 * 301.33870 * 11 9 8 13 13 N 1.46919 * 108.78010 * 305.36546 * 12 11 9 14 14 C 1.36936 * 120.63738 * 233.63303 * 13 12 11 15 15 H 1.08003 * 119.99499 * 27.66324 * 14 13 12 16 16 C 1.38804 * 120.00210 * 207.66661 * 14 13 12 17 17 N 1.31621 * 120.00295 * 17.36071 * 16 14 13 18 18 Si 1.86805 * 119.99762 * 197.35673 * 16 14 13 19 19 H 1.48507 * 109.47133 * 60.00248 * 18 16 14 20 20 H 1.48507 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47516 * 299.99765 * 18 16 14 22 22 C 1.46928 * 118.73595 * 53.60775 * 13 12 11 23 23 C 1.53037 * 109.46554 * 180.02562 * 9 8 6 24 24 C 1.50699 * 109.47310 * 65.00140 * 4 3 2 25 25 C 1.38231 * 119.61549 * 84.99555 * 24 4 3 26 26 C 1.38629 * 119.15673 * 179.72554 * 25 24 4 27 27 C 1.38672 * 118.42145 * 359.97438 * 26 25 24 28 28 C 1.38174 * 119.16558 * 0.02562 * 27 26 25 29 29 N 1.31856 * 119.61922 * 264.72681 * 24 4 3 30 30 H 1.09000 * 109.47387 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46950 * 299.99926 * 1 2 3 33 33 H 1.08997 * 109.47453 * 240.00223 * 2 1 3 34 34 H 1.08999 * 109.47124 * 119.99543 * 2 1 3 35 35 H 1.08998 * 109.47380 * 60.00337 * 3 2 1 36 36 H 1.09000 * 109.47240 * 300.00112 * 3 2 1 37 37 H 0.97003 * 119.99572 * 0.02562 * 8 6 4 38 38 H 1.08999 * 109.46813 * 60.00732 * 10 9 8 39 39 H 1.08997 * 109.46989 * 180.02562 * 10 9 8 40 40 H 1.08999 * 109.47431 * 300.00477 * 10 9 8 41 41 H 1.09000 * 109.50000 * 61.29411 * 11 9 8 42 42 H 1.09004 * 109.49249 * 181.38915 * 11 9 8 43 43 H 1.09003 * 109.58591 * 185.57805 * 12 11 9 44 44 H 1.09001 * 109.70100 * 65.22767 * 12 11 9 45 45 H 0.97000 * 119.99977 * 180.02562 * 17 16 14 46 46 H 1.09008 * 109.58710 * 186.60482 * 22 13 12 47 47 H 1.08998 * 109.70372 * 66.25171 * 22 13 12 48 48 H 1.08997 * 109.49824 * 178.61246 * 23 9 8 49 49 H 1.09003 * 109.49169 * 298.67042 * 23 9 8 50 50 H 1.07999 * 120.42071 * 359.74887 * 25 24 4 51 51 H 1.08005 * 120.78849 * 180.02562 * 26 25 24 52 52 H 1.08006 * 120.41719 * 180.02562 * 27 26 25 53 53 H 1.08003 * 119.61796 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0723 2.8580 0.1233 7 8 4.7692 3.3327 -0.7486 8 7 3.7472 3.5965 1.2027 9 6 4.2350 4.9726 1.3230 10 6 3.7232 5.7998 0.1419 11 6 5.7655 4.9730 1.3202 12 6 6.2744 4.1158 2.4834 13 7 5.6732 4.6065 3.7309 14 6 6.4602 4.9414 4.8003 15 1 7.4733 5.2795 4.6402 16 6 5.9558 4.8462 6.0900 17 7 4.8767 4.1297 6.3235 18 14 6.8087 5.7351 7.4942 19 1 6.8218 7.1947 7.2209 20 1 6.0779 5.4757 8.7608 21 1 8.2040 5.2420 7.6175 22 6 4.2113 4.7316 3.8091 23 6 3.7259 5.5817 2.6313 24 6 4.0718 0.8424 -1.2886 25 6 4.2002 1.6406 -2.4098 26 6 4.6682 1.0799 -3.5881 27 6 4.9915 -0.2686 -3.5945 28 6 4.8370 -1.0036 -2.4347 29 7 4.3883 -0.4369 -1.3316 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6765 1.9564 -0.8900 37 1 3.1901 3.2167 1.9002 38 1 2.6332 5.7992 0.1432 39 1 4.0865 6.8236 0.2309 40 1 4.0857 5.3657 -0.7899 41 1 6.1277 4.5605 0.3785 42 1 6.1291 5.9942 1.4344 43 1 7.3599 4.1924 2.5461 44 1 5.9901 3.0755 2.3251 45 1 4.5241 4.0635 7.2247 46 1 3.9355 5.2145 4.7466 47 1 3.7547 3.7431 3.7591 48 1 4.1088 6.5971 2.7331 49 1 2.6361 5.6029 2.6228 50 1 3.9396 2.6879 -2.3683 51 1 4.7792 1.6792 -4.4797 52 1 5.3593 -0.7385 -4.4948 53 1 5.0862 -2.0545 -2.4316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754628277.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:28 Heat of formation + Delta-G solvation = -4.604191 kcal Electronic energy + Delta-G solvation = -32110.023330 eV Core-core repulsion = 28174.121470 eV Total energy + Delta-G solvation = -3935.901860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.98242 -40.79719 -38.94351 -36.74184 -36.11113 -33.70331 -33.35830 -33.00204 -32.35032 -31.58156 -29.87358 -29.05656 -26.04787 -25.87784 -24.43714 -24.03194 -23.77156 -22.60653 -22.07104 -21.23835 -20.12475 -18.82701 -18.18230 -17.77344 -16.99546 -16.82731 -16.67347 -16.23511 -16.12719 -15.64910 -15.62807 -15.22322 -15.15323 -14.87844 -14.66402 -14.58661 -14.28072 -14.06706 -13.98395 -13.76980 -13.35668 -13.31035 -13.11042 -13.00549 -12.91741 -12.78046 -12.60754 -12.51251 -12.36095 -12.21286 -12.04740 -12.00082 -11.94313 -11.74980 -11.53847 -11.30176 -11.26311 -10.74855 -10.52229 -10.34194 -10.24357 -9.87269 -9.78446 -8.65434 -7.87204 -5.30980 0.25102 0.46482 1.47241 1.48670 1.55598 1.66945 2.19183 2.51604 2.94940 3.27114 3.30505 3.52537 3.71845 3.86716 3.95774 3.99217 4.05789 4.10343 4.13946 4.17266 4.27704 4.31946 4.35742 4.48976 4.50928 4.64293 4.68806 4.72821 4.76467 4.80021 4.83566 4.91681 4.93250 4.93676 4.97972 5.00856 5.05068 5.16308 5.23305 5.25240 5.29107 5.30115 5.35820 5.37982 5.41527 5.48081 5.50419 5.64193 5.71855 5.79525 5.88281 6.39727 6.66424 7.10619 7.16725 7.31236 7.86922 8.38552 9.18297 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.003013 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.631181 B = 9291.515128 C = 9651.888827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.096 4.096 4 C -0.056 4.056 5 H 0.102 0.898 6 C 0.525 3.475 7 O -0.555 6.555 8 N -0.702 5.702 9 C 0.189 3.811 10 C -0.149 4.149 11 C -0.130 4.130 12 C 0.153 3.847 13 N -0.605 5.605 14 C -0.268 4.268 15 H 0.058 0.942 16 C -0.043 4.043 17 N -0.928 5.928 18 Si 0.963 3.037 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.178 3.822 23 C -0.131 4.131 24 C 0.124 3.876 25 C -0.145 4.145 26 C -0.092 4.092 27 C -0.169 4.169 28 C 0.076 3.924 29 N -0.501 5.501 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.405 0.595 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.004 0.996 45 H 0.251 0.749 46 H 0.056 0.944 47 H 0.008 0.992 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.141 0.859 51 H 0.153 0.847 52 H 0.163 0.837 53 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 -5.977 -19.430 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.134 4.134 4 C -0.078 4.078 5 H 0.120 0.880 6 C 0.311 3.689 7 O -0.434 6.434 8 N -0.352 5.352 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.170 4.170 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.398 4.398 15 H 0.076 0.924 16 C -0.239 4.239 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.053 3.947 23 C -0.171 4.171 24 C -0.013 4.013 25 C -0.165 4.165 26 C -0.118 4.118 27 C -0.189 4.189 28 C -0.081 4.081 29 N -0.211 5.211 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.026 0.974 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.159 0.841 51 H 0.171 0.829 52 H 0.181 0.819 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.418 -6.160 -19.118 21.779 hybrid contribution 0.702 0.538 0.825 1.210 sum -7.716 -5.622 -18.293 20.634 Atomic orbital electron populations 1.21747 0.94560 1.02080 1.02186 1.21432 0.96506 0.95337 1.01998 1.21549 0.89451 0.98784 1.03594 1.20136 0.98743 0.92473 0.96453 0.87980 1.20366 0.79605 0.87420 0.81470 1.90573 1.38908 1.73160 1.40778 1.46063 1.52707 1.14097 1.22379 1.20174 0.92900 0.81041 0.95567 1.22101 1.01291 0.99478 0.97796 1.22228 0.95914 1.00354 0.98455 1.20823 0.95633 0.94257 0.86537 1.44251 1.02641 1.75518 1.10489 1.19417 0.97337 1.37205 0.85838 0.92429 1.25673 0.99359 0.99589 0.99289 1.70143 1.25849 1.40995 1.20360 0.85414 0.77890 0.78861 0.78682 1.20466 1.21736 1.20674 1.20591 0.82523 0.95490 0.96115 1.22317 1.00732 0.99982 0.94022 1.20521 0.96672 0.89835 0.94294 1.22374 0.99360 1.01574 0.93147 1.21958 0.95740 0.95703 0.98396 1.22453 1.00884 0.94861 1.00675 1.23142 0.95469 1.01383 0.88098 1.67366 1.11555 1.11954 1.30190 0.92522 0.92289 0.92073 0.92882 0.92112 0.89651 0.90998 0.75937 0.91488 0.91520 0.91657 0.91020 0.92100 0.94493 0.97820 0.94006 0.92547 0.97425 0.91462 0.89822 0.84098 0.82908 0.81932 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.26 5.72 30.60 0.17 -2.09 16 3 C -0.10 -1.94 4.62 30.60 0.14 -1.80 16 4 C -0.06 -1.44 2.52 -12.28 -0.03 -1.48 16 5 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 6 C 0.52 15.32 6.36 87.66 0.56 15.87 16 7 O -0.55 -18.23 9.33 -3.05 -0.03 -18.26 16 8 N -0.70 -20.38 3.96 -422.80 -1.68 -22.05 16 9 C 0.19 5.89 0.66 3.63 0.00 5.90 16 10 C -0.15 -3.91 8.40 71.98 0.60 -3.30 16 11 C -0.13 -4.75 4.67 30.67 0.14 -4.61 16 12 C 0.15 6.77 6.25 86.36 0.54 7.31 16 13 N -0.61 -30.14 2.99 -699.20 -2.09 -32.24 16 14 C -0.27 -14.84 9.58 84.03 0.81 -14.04 16 15 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 16 C -0.04 -2.38 4.91 84.86 0.42 -1.97 16 17 N -0.93 -53.30 11.19 21.65 0.24 -53.06 16 18 Si 0.96 44.69 29.59 68.60 2.03 46.72 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 C 0.18 7.98 5.03 86.35 0.43 8.42 16 23 C -0.13 -4.44 4.95 30.65 0.15 -4.29 16 24 C 0.12 3.34 4.88 42.55 0.21 3.55 16 25 C -0.14 -3.66 8.26 22.36 0.18 -3.47 16 26 C -0.09 -1.84 10.18 22.47 0.23 -1.61 16 27 C -0.17 -2.95 10.11 22.36 0.23 -2.73 16 28 C 0.08 1.57 11.18 84.67 0.95 2.52 16 29 N -0.50 -13.31 9.63 -183.89 -1.77 -15.08 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.17 6.90 -2.39 -0.02 1.15 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.56 7.43 -2.39 -0.02 1.54 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.40 11.22 6.63 -92.71 -0.61 10.61 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.85 6.17 -2.39 -0.01 1.84 16 41 H 0.07 2.67 6.20 -2.39 -0.01 2.65 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 44 H 0.00 0.18 7.74 -2.39 -0.02 0.16 16 45 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.06 2.91 6.04 -2.38 -0.01 2.89 16 47 H 0.01 0.35 6.94 -2.39 -0.02 0.34 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.14 3.76 5.95 -2.91 -0.02 3.74 16 51 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 52 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 53 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -66.12 404.07 3.43 -62.68 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.28 Total: 30.77 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.45 Total: 0.52 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.30 Total: -122.43 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.03 Total: -18.26 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.12 3.43 -62.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754628277.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.080 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds