Wall clock time and date at job start Wed Apr 1 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47046 * 304.99570 * 5 4 3 7 7 C 1.52999 * 109.46811 * 184.99727 * 5 4 3 8 8 N 1.46501 * 109.47016 * 185.00166 * 7 5 4 9 9 C 1.36941 * 119.99965 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00222 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00175 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00282 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47263 * 89.99267 * 13 11 9 15 15 H 1.48499 * 109.46809 * 209.99688 * 13 11 9 16 16 H 1.48498 * 109.46776 * 329.99422 * 13 11 9 17 17 N 1.46496 * 109.47070 * 64.99833 * 5 4 3 18 18 C 1.34776 * 120.00212 * 274.99432 * 17 5 4 19 19 O 1.21288 * 119.99777 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00244 * 180.02562 * 18 17 5 21 21 H 1.08999 * 109.25368 * 60.00347 * 20 18 17 22 22 C 1.52721 * 109.25645 * 179.48132 * 20 18 17 23 23 C 1.53325 * 108.42810 * 171.55833 * 22 20 18 24 24 C 1.52774 * 108.34769 * 290.10581 * 23 22 20 25 25 C 1.50485 * 110.56102 * 50.79759 * 24 23 22 26 26 C 1.39196 * 117.97162 * 162.70909 * 25 24 23 27 27 C 1.38413 * 118.86746 * 179.79656 * 26 25 24 28 28 C 1.38236 * 118.84189 * 359.97149 * 27 26 25 29 29 N 1.31510 * 120.61260 * 0.08969 * 28 27 26 30 30 C 1.32749 * 122.38857 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 32 32 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 34 34 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 35 35 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 36 36 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 37 37 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 38 38 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 39 39 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 40 40 H 1.09003 * 109.47143 * 304.99714 * 7 5 4 41 41 H 1.08996 * 109.47220 * 65.00125 * 7 5 4 42 42 H 0.96993 * 119.99952 * 359.97438 * 8 7 5 43 43 H 0.96995 * 120.00698 * 180.02562 * 12 11 9 44 44 H 0.97000 * 119.99885 * 94.99899 * 17 5 4 45 45 H 1.09004 * 109.67549 * 291.28890 * 22 20 18 46 46 H 1.09003 * 109.67383 * 51.82261 * 22 20 18 47 47 H 1.09000 * 109.68849 * 49.81588 * 23 22 20 48 48 H 1.08994 * 109.69015 * 170.34923 * 23 22 20 49 49 H 1.09000 * 109.26103 * 171.08651 * 24 23 22 50 50 H 1.09006 * 109.25765 * 290.52175 * 24 23 22 51 51 H 1.07998 * 120.56437 * 359.81338 * 26 25 24 52 52 H 1.07994 * 120.57565 * 179.97438 * 27 26 25 53 53 H 1.08007 * 119.69662 * 180.11569 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0059 9 6 7.4470 4.5094 -0.0884 10 1 8.1395 3.6950 -0.2419 11 6 7.9190 5.8098 0.0251 12 7 9.2107 6.0503 -0.0537 13 14 6.7213 7.2184 0.2913 14 1 6.5198 7.4284 1.7475 15 1 7.2711 8.4569 -0.3162 16 1 5.4210 6.8895 -0.3460 17 7 3.6930 3.5392 1.2523 18 6 2.4758 4.1061 1.3683 19 8 1.7007 4.0743 0.4359 20 6 2.0778 4.7796 2.6564 21 1 2.7714 5.5941 2.8653 22 6 0.6659 5.3443 2.5142 23 6 0.1992 5.8345 3.8899 24 6 -0.0309 4.6158 4.7821 25 6 1.1687 3.7077 4.7560 26 6 1.2923 2.7600 5.7681 27 6 2.3863 1.9123 5.7598 28 6 3.3181 2.0359 4.7461 29 7 3.1692 2.9441 3.8067 30 6 2.1359 3.7771 3.7804 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9564 -0.8900 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8891 40 1 6.0357 2.2731 0.6649 41 1 5.8895 2.4807 -1.0969 42 1 5.4812 4.9906 0.1316 43 1 9.5406 6.9589 0.0260 44 1 4.3128 3.5644 1.9981 45 1 0.6728 6.1770 1.8109 46 1 -0.0064 4.5652 2.1547 47 1 0.9642 6.4733 4.3311 48 1 -0.7303 6.3940 3.7845 49 1 -0.2088 4.9475 5.8050 50 1 -0.9037 4.0688 4.4254 51 1 0.5470 2.6873 6.5463 52 1 2.5099 1.1672 6.5317 53 1 4.1762 1.3803 4.7251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755359926.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:10 Heat of formation + Delta-G solvation = -34.250160 kcal Electronic energy + Delta-G solvation = -32137.772047 eV Core-core repulsion = 28200.584641 eV Total energy + Delta-G solvation = -3937.187405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.03969 -40.59217 -38.25927 -37.12479 -36.36038 -35.14510 -34.39675 -33.20675 -31.94427 -31.35562 -30.71542 -28.97900 -25.97490 -25.47440 -24.21799 -24.12415 -23.57603 -22.17024 -21.80953 -21.34765 -20.64767 -19.76517 -18.22184 -17.77172 -17.54067 -17.16298 -16.71037 -16.55681 -16.15520 -15.74629 -15.70697 -15.17504 -15.07932 -14.81165 -14.73222 -14.61467 -14.53259 -14.26661 -14.00293 -13.82176 -13.75487 -13.58226 -13.32595 -13.25064 -12.96109 -12.91422 -12.87557 -12.57787 -12.19439 -12.12267 -12.00474 -11.88245 -11.87197 -11.84353 -11.51026 -11.46108 -11.39085 -11.05676 -10.88119 -10.54675 -10.29504 -9.81648 -9.67994 -9.33320 -8.05328 -5.38103 0.14725 0.36469 1.32529 1.34689 1.41837 1.69650 2.32107 2.43902 2.85035 3.18928 3.26503 3.46088 3.50889 3.81132 3.84185 3.88367 3.88808 4.04326 4.10341 4.13137 4.16791 4.26306 4.28918 4.30963 4.36511 4.42155 4.50431 4.55269 4.57782 4.69100 4.82768 4.84203 4.88821 4.89015 4.90800 4.95864 4.96447 5.04672 5.09900 5.10714 5.18265 5.19306 5.28003 5.29032 5.37478 5.39427 5.41002 5.54699 5.69116 5.74538 5.80129 6.18464 6.72286 7.03584 7.04131 7.37598 7.79848 7.98902 9.16157 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.004273 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.414411 B = 6551.951937 C = 7879.024482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.114 4.114 5 C 0.143 3.857 6 H 0.064 0.936 7 C 0.151 3.849 8 N -0.756 5.756 9 C -0.231 4.231 10 H 0.063 0.937 11 C -0.056 4.056 12 N -0.980 5.980 13 Si 0.946 3.054 14 H -0.274 1.274 15 H -0.293 1.293 16 H -0.267 1.267 17 N -0.695 5.695 18 C 0.521 3.479 19 O -0.571 6.571 20 C -0.060 4.060 21 H 0.106 0.894 22 C -0.094 4.094 23 C -0.116 4.116 24 C -0.075 4.075 25 C -0.123 4.123 26 C -0.079 4.079 27 C -0.165 4.165 28 C 0.088 3.912 29 N -0.509 5.509 30 C 0.114 3.886 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.363 0.637 43 H 0.258 0.742 44 H 0.412 0.588 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.165 0.835 52 H 0.164 0.836 53 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.337 -9.681 14.557 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.153 4.153 5 C 0.037 3.963 6 H 0.082 0.918 7 C 0.025 3.975 8 N -0.401 5.401 9 C -0.362 4.362 10 H 0.081 0.919 11 C -0.248 4.248 12 N -0.630 5.630 13 Si 0.774 3.226 14 H -0.200 1.200 15 H -0.220 1.220 16 H -0.192 1.192 17 N -0.347 5.347 18 C 0.308 3.692 19 O -0.452 6.452 20 C -0.081 4.081 21 H 0.124 0.876 22 C -0.132 4.132 23 C -0.154 4.154 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.104 4.104 27 C -0.184 4.184 28 C -0.071 4.071 29 N -0.218 5.218 30 C -0.021 4.021 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.196 0.804 43 H 0.067 0.933 44 H 0.250 0.750 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.119 0.881 50 H 0.106 0.894 51 H 0.183 0.817 52 H 0.182 0.818 53 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -24.009 -9.716 13.206 29.073 hybrid contribution 0.035 1.041 0.707 1.259 sum -23.974 -8.674 13.912 29.044 Atomic orbital electron populations 1.21704 0.95624 1.01812 1.01152 1.21528 0.96161 0.96087 1.01996 1.21474 0.94524 0.96456 1.01131 1.21856 0.96109 0.94389 1.02953 1.21146 0.93650 0.94438 0.87023 0.91754 1.21057 0.91124 0.85859 0.99501 1.42683 1.03620 1.04591 1.89232 1.19054 0.83562 0.93477 1.40063 0.91887 1.25359 0.97075 0.99558 1.02790 1.69855 1.13488 1.20407 1.59296 0.85539 0.79088 0.79595 0.78351 1.19951 1.21962 1.19234 1.46113 1.16362 1.55842 1.16335 1.20509 0.81601 0.78000 0.89109 1.90650 1.52075 1.60984 1.41458 1.20257 1.01256 0.96651 0.89975 0.87626 1.21363 0.92203 1.00831 0.98846 1.21605 1.02850 0.97524 0.93382 1.20519 0.94163 0.94489 1.02084 1.20670 0.97585 0.99034 0.95205 1.21974 0.98066 0.92888 0.97515 1.22453 0.94922 1.00825 1.00207 1.23017 0.99364 0.94797 0.89949 1.67289 1.22633 1.05324 1.26529 1.20500 0.91561 0.95114 0.94929 0.93254 0.91443 0.93904 0.91425 0.92186 0.93665 0.93662 0.90061 0.91209 0.94273 0.93997 0.80409 0.93287 0.74963 0.91017 0.91550 0.91377 0.88615 0.88052 0.89377 0.81709 0.81815 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.12 -2.67 5.93 30.59 0.18 -2.49 16 3 C -0.10 -2.75 3.82 30.60 0.12 -2.63 16 4 C -0.11 -3.18 4.89 30.60 0.15 -3.03 16 5 C 0.14 4.85 2.42 44.99 0.11 4.95 16 6 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 7 C 0.15 5.90 5.82 86.38 0.50 6.40 16 8 N -0.76 -36.53 5.24 -343.45 -1.80 -38.33 16 9 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 10 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 11 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 12 N -0.98 -63.38 13.97 21.65 0.30 -63.07 16 13 Si 0.95 47.22 27.74 68.60 1.90 49.12 16 14 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 16 H -0.27 -12.72 6.52 99.48 0.65 -12.07 16 17 N -0.69 -23.16 3.87 -442.53 -1.71 -24.87 16 18 C 0.52 17.13 5.62 87.66 0.49 17.62 16 19 O -0.57 -21.16 12.96 -3.05 -0.04 -21.20 16 20 C -0.06 -1.59 2.70 -12.37 -0.03 -1.62 16 21 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 22 C -0.09 -2.06 4.65 30.61 0.14 -1.92 16 23 C -0.12 -1.69 5.98 30.63 0.18 -1.51 16 24 C -0.08 -0.94 5.68 29.71 0.17 -0.77 16 25 C -0.12 -2.22 5.74 -19.86 -0.11 -2.33 16 26 C -0.08 -1.08 9.75 22.54 0.22 -0.86 16 27 C -0.16 -2.36 10.12 22.31 0.23 -2.13 16 28 C 0.09 1.75 11.19 84.74 0.95 2.70 16 29 N -0.51 -13.03 7.58 -184.01 -1.40 -14.43 16 30 C 0.11 2.75 6.19 42.27 0.26 3.02 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.44 5.64 -2.39 -0.01 1.43 16 37 H 0.04 1.43 7.85 -2.39 -0.02 1.41 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.36 17.45 5.20 -92.71 -0.48 16.97 16 43 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 44 H 0.41 14.06 6.97 -92.71 -0.65 13.41 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.59 7.78 -2.39 -0.02 1.57 16 47 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 0.81 8.13 -2.39 -0.02 0.79 16 50 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 51 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 52 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 53 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -73.87 412.12 2.58 -71.28 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.29 Total: 43.76 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.62 Total: -2.26 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -4.60 Total: -140.70 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -73.87 2.58 -71.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755359926.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.031 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds