Wall clock time and date at job start Wed Apr 1 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47333 * 54.99642 * 5 4 3 7 7 C 1.52994 * 109.47233 * 175.00111 * 5 4 3 8 8 N 1.46507 * 109.47027 * 174.99848 * 7 5 4 9 9 C 1.36934 * 119.99748 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00227 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00133 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00203 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46892 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47341 * 120.00077 * 13 11 9 16 16 H 1.48497 * 109.47389 * 240.00171 * 13 11 9 17 17 N 1.46497 * 109.46689 * 295.00048 * 5 4 3 18 18 C 1.34781 * 120.00356 * 84.99883 * 17 5 4 19 19 O 1.21285 * 119.99433 * 0.02562 * 18 17 5 20 20 C 1.50697 * 120.00286 * 179.97438 * 18 17 5 21 21 H 1.08997 * 109.24871 * 60.00606 * 20 18 17 22 22 C 1.52722 * 109.25561 * 179.47759 * 20 18 17 23 23 C 1.53329 * 108.42633 * 171.55901 * 22 20 18 24 24 C 1.52770 * 108.34937 * 290.10842 * 23 22 20 25 25 C 1.50496 * 110.56219 * 50.79974 * 24 23 22 26 26 C 1.39185 * 117.97202 * 162.70948 * 25 24 23 27 27 C 1.38405 * 118.86667 * 179.79503 * 26 25 24 28 28 C 1.38242 * 118.84698 * 359.97045 * 27 26 25 29 29 N 1.31517 * 120.60355 * 0.13421 * 28 27 26 30 30 C 1.32756 * 122.39135 * 359.91172 * 29 28 27 31 31 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 38 38 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 39 39 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 40 40 H 1.09004 * 109.47287 * 294.99540 * 7 5 4 41 41 H 1.09000 * 109.47325 * 55.00058 * 7 5 4 42 42 H 0.96998 * 119.99616 * 359.97438 * 8 7 5 43 43 H 0.97002 * 120.00442 * 179.97438 * 12 11 9 44 44 H 0.97001 * 120.00325 * 264.99672 * 17 5 4 45 45 H 1.09001 * 109.67679 * 291.29195 * 22 20 18 46 46 H 1.08998 * 109.67663 * 51.82746 * 22 20 18 47 47 H 1.09006 * 109.68709 * 49.82097 * 23 22 20 48 48 H 1.09002 * 109.68788 * 170.35089 * 23 22 20 49 49 H 1.09003 * 109.25844 * 171.08229 * 24 23 22 50 50 H 1.09000 * 109.25565 * 290.52270 * 24 23 22 51 51 H 1.08004 * 120.56568 * 359.80813 * 26 25 24 52 52 H 1.08004 * 120.57681 * 179.97438 * 27 26 25 53 53 H 1.07992 * 119.69737 * 180.11583 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6451 3.4238 0.8430 7 6 5.6048 2.8866 0.1276 8 7 6.1032 4.2592 0.0084 9 6 7.4469 4.5093 0.0912 10 1 8.1393 3.6948 0.2448 11 6 7.9190 5.8098 -0.0212 12 7 7.0751 6.8026 -0.2068 13 14 9.7520 6.1512 0.0925 14 1 10.4812 4.8745 0.3021 15 1 10.2166 6.7849 -1.1675 16 1 10.0156 7.0653 1.2327 17 7 3.6931 3.5402 -1.2505 18 6 2.4758 4.1072 -1.3661 19 8 1.7010 4.0752 -0.4335 20 6 2.0779 4.7817 -2.6535 21 1 2.1107 4.0549 -3.4651 22 6 0.6562 5.3235 -2.5198 23 6 0.3480 6.1845 -3.7505 24 6 1.1862 7.4590 -3.6681 25 6 2.6322 7.1253 -3.4179 26 6 3.5831 8.1087 -3.6751 27 6 4.9181 7.8231 -3.4475 28 6 5.2607 6.5711 -2.9718 29 7 4.3348 5.6658 -2.7419 30 6 3.0444 5.9000 -2.9483 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 3.9330 0.9287 0.8908 39 1 3.9338 0.9285 -0.8891 40 1 5.8895 2.4798 1.0980 41 1 6.0357 2.2737 -0.6640 42 1 5.4812 4.9907 -0.1291 43 1 7.4049 7.7114 -0.2850 44 1 4.3128 3.5661 -1.9962 45 1 -0.0491 4.4942 -2.4662 46 1 0.5783 5.9310 -1.6182 47 1 0.6035 5.6349 -4.6565 48 1 -0.7114 6.4411 -3.7632 49 1 1.1008 8.0069 -4.6065 50 1 0.8148 8.0815 -2.8540 51 1 3.2842 9.0781 -4.0459 52 1 5.6790 8.5655 -3.6380 53 1 6.2980 6.3342 -2.7875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755359927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:15 Heat of formation + Delta-G solvation = -32.805841 kcal Electronic energy + Delta-G solvation = -32300.212978 eV Core-core repulsion = 28363.088203 eV Total energy + Delta-G solvation = -3937.124775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.90609 -40.47503 -38.12650 -36.96682 -36.20160 -35.03126 -34.28783 -32.77101 -31.69169 -31.21436 -30.60665 -28.62418 -25.94646 -25.40353 -24.07787 -24.02160 -23.69204 -22.00475 -21.75103 -21.21739 -20.54283 -19.10359 -18.13987 -17.57986 -17.44491 -17.03570 -16.68832 -16.38108 -16.10671 -15.66940 -15.28486 -15.16724 -15.06174 -14.75422 -14.63576 -14.50641 -14.36083 -14.08158 -13.84510 -13.70966 -13.52745 -13.39144 -13.17819 -13.06332 -12.80931 -12.80424 -12.74850 -12.47930 -12.05907 -12.03597 -11.97271 -11.82889 -11.78526 -11.71085 -11.42786 -11.35116 -11.32235 -10.91557 -10.78145 -10.42255 -10.12961 -9.70634 -9.53640 -8.86798 -7.80271 -5.09355 0.28769 0.49824 1.48335 1.50749 1.58404 1.78854 2.44628 2.60995 2.99363 3.32326 3.49692 3.61593 3.69228 3.92926 3.95390 3.97861 4.08428 4.11221 4.21755 4.27591 4.30782 4.35371 4.37691 4.41213 4.46962 4.50088 4.60844 4.65810 4.66802 4.80515 4.88944 4.93717 4.94795 4.97840 4.99257 5.02134 5.04403 5.12348 5.17368 5.18035 5.25554 5.28047 5.36698 5.43094 5.46298 5.47333 5.48016 5.58136 5.61262 5.80256 5.94546 6.36331 6.83048 7.22076 7.45493 7.48626 8.19182 8.47424 9.39389 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.005195 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.595855 B = 5388.654911 C = 8767.247456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.049 0.951 7 C 0.146 3.854 8 N -0.735 5.735 9 C -0.244 4.244 10 H 0.068 0.932 11 C -0.057 4.057 12 N -0.942 5.942 13 Si 0.960 3.040 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.302 1.302 17 N -0.689 5.689 18 C 0.521 3.479 19 O -0.576 6.576 20 C -0.048 4.048 21 H 0.124 0.876 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.132 4.132 26 C -0.078 4.078 27 C -0.178 4.178 28 C 0.127 3.873 29 N -0.492 5.492 30 C 0.108 3.892 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.379 0.621 43 H 0.246 0.754 44 H 0.411 0.589 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.163 0.837 52 H 0.141 0.859 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 -4.359 -10.893 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.139 4.139 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.378 5.378 9 C -0.376 4.376 10 H 0.086 0.914 11 C -0.251 4.251 12 N -0.592 5.592 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.219 1.219 16 H -0.230 1.230 17 N -0.340 5.340 18 C 0.308 3.692 19 O -0.457 6.457 20 C -0.070 4.070 21 H 0.142 0.858 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.104 4.104 27 C -0.198 4.198 28 C -0.032 4.032 29 N -0.201 5.201 30 C -0.028 4.028 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.212 0.788 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.097 0.903 51 H 0.180 0.820 52 H 0.159 0.841 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.094 -5.278 -9.898 18.805 hybrid contribution 1.732 1.657 0.022 2.397 sum -13.362 -3.621 -9.875 17.005 Atomic orbital electron populations 1.21727 0.95569 1.01819 1.01394 1.21542 0.96227 0.95914 1.02168 1.21516 0.94323 0.96634 1.01421 1.21907 0.96347 0.94190 1.03097 1.21068 0.93996 0.93999 0.86909 0.93240 1.21038 0.91190 0.87442 0.98411 1.42440 1.04487 1.03492 1.87407 1.19525 0.84877 0.92593 1.40563 0.91411 1.25277 1.00410 0.95690 1.03674 1.69856 1.33324 0.98435 1.57625 0.85283 0.81907 0.77280 0.76415 1.20030 1.21931 1.22996 1.46033 1.16006 1.55466 1.16510 1.20560 0.81637 0.77495 0.89541 1.90639 1.52636 1.60983 1.41458 1.20216 0.95355 0.95245 0.96157 0.85811 1.21365 0.92060 1.00459 0.99259 1.21585 1.00952 0.95068 0.97201 1.20501 0.88245 0.98937 1.03401 1.20658 0.98555 0.93419 1.00730 1.21854 0.91811 0.99878 0.96886 1.22258 0.98131 0.98140 1.01250 1.22442 0.98351 0.90244 0.92129 1.67271 1.01305 1.36629 1.14921 1.20850 0.90808 0.94145 0.96974 0.93204 0.93550 0.91534 0.91754 0.91561 0.92991 0.93991 0.90282 0.90720 0.95259 0.95111 0.78766 0.94516 0.75108 0.89778 0.92879 0.90420 0.88478 0.88099 0.90332 0.81971 0.84128 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.66 5.93 30.59 0.18 -2.48 16 3 C -0.10 -2.86 3.82 30.59 0.12 -2.75 16 4 C -0.12 -3.35 4.89 30.60 0.15 -3.20 16 5 C 0.15 5.34 2.42 44.99 0.11 5.45 16 6 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 7 C 0.15 6.04 5.82 86.38 0.50 6.54 16 8 N -0.73 -37.53 5.43 -343.44 -1.87 -39.40 16 9 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 10 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 11 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 12 N -0.94 -54.33 13.00 21.65 0.28 -54.05 16 13 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 17 N -0.69 -24.68 3.87 -442.53 -1.71 -26.39 16 18 C 0.52 18.32 5.62 87.66 0.49 18.81 16 19 O -0.58 -22.87 12.97 -3.05 -0.04 -22.91 16 20 C -0.05 -1.36 2.70 -12.37 -0.03 -1.39 16 21 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 22 C -0.09 -2.17 4.65 30.61 0.14 -2.03 16 23 C -0.11 -1.78 5.98 30.63 0.18 -1.60 16 24 C -0.07 -1.33 5.68 29.71 0.17 -1.16 16 25 C -0.13 -3.51 5.74 -19.86 -0.11 -3.62 16 26 C -0.08 -2.05 9.75 22.54 0.22 -1.83 16 27 C -0.18 -5.68 10.12 22.31 0.23 -5.46 16 28 C 0.13 4.99 11.19 84.74 0.95 5.94 16 29 N -0.49 -18.60 7.58 -184.02 -1.40 -20.00 16 30 C 0.11 3.44 6.19 42.26 0.26 3.70 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.60 5.65 -2.39 -0.01 1.58 16 37 H 0.04 1.37 7.85 -2.39 -0.02 1.35 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.38 20.99 7.33 -92.71 -0.68 20.31 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.41 15.15 6.97 -92.71 -0.65 14.50 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.50 7.78 -2.39 -0.02 1.48 16 47 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.10 1.30 8.13 -2.39 -0.02 1.28 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 52 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 53 H 0.13 5.97 8.00 -2.91 -0.02 5.94 16 Total: -1.00 -66.43 415.12 2.44 -63.99 By element: Atomic # 1 Polarization: 54.26 SS G_CDS: -0.43 Total: 53.83 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.57 Total: -2.59 kcal Atomic # 7 Polarization: -135.14 SS G_CDS: -4.69 Total: -139.83 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.91 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.43 2.44 -63.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755359927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.187 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds