Wall clock time and date at job start Wed Apr 1 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46771 * 2 1 4 4 C 1.53004 * 109.46730 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47191 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47224 * 54.99476 * 5 4 3 7 7 C 1.52992 * 109.47414 * 175.00147 * 5 4 3 8 8 N 1.46498 * 109.47364 * 174.99609 * 7 5 4 9 9 C 1.36935 * 120.00239 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46505 * 109.47001 * 295.00234 * 5 4 3 18 18 C 1.34770 * 120.00286 * 84.99530 * 17 5 4 19 19 O 1.21284 * 120.00404 * 0.02562 * 18 17 5 20 20 C 1.50699 * 120.00071 * 180.02562 * 18 17 5 21 21 H 1.09005 * 109.25836 * 299.47949 * 20 18 17 22 22 C 1.52729 * 109.25922 * 180.02562 * 20 18 17 23 23 C 1.53328 * 108.42593 * 188.42260 * 22 20 18 24 24 C 1.52767 * 108.35504 * 69.89163 * 23 22 20 25 25 C 1.50501 * 110.56318 * 309.21561 * 24 23 22 26 26 C 1.39189 * 117.97423 * 197.28581 * 25 24 23 27 27 C 1.38406 * 118.86973 * 180.21314 * 26 25 24 28 28 C 1.38244 * 118.84267 * 0.06984 * 27 26 25 29 29 N 1.31510 * 120.60972 * 359.83059 * 28 27 26 30 30 C 1.32710 * 122.39868 * 0.03108 * 29 28 27 31 31 H 1.09003 * 109.46767 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46496 * 299.99439 * 1 2 3 33 33 H 1.08998 * 109.47673 * 59.99372 * 1 2 3 34 34 H 1.09005 * 109.46496 * 240.00561 * 2 1 3 35 35 H 1.08995 * 109.47181 * 120.00729 * 2 1 3 36 36 H 1.08992 * 109.46867 * 60.01009 * 3 2 1 37 37 H 1.08989 * 109.47493 * 300.00115 * 3 2 1 38 38 H 1.08997 * 109.46955 * 60.00154 * 4 3 2 39 39 H 1.09006 * 109.47190 * 300.00090 * 4 3 2 40 40 H 1.09001 * 109.47602 * 54.99482 * 7 5 4 41 41 H 1.09001 * 109.46922 * 294.99627 * 7 5 4 42 42 H 0.97004 * 119.99747 * 0.02562 * 8 7 5 43 43 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 44 44 H 0.97002 * 119.99987 * 265.00223 * 17 5 4 45 45 H 1.08994 * 109.67215 * 308.15631 * 22 20 18 46 46 H 1.09002 * 109.67488 * 68.65163 * 22 20 18 47 47 H 1.08997 * 109.68695 * 189.60597 * 23 22 20 48 48 H 1.09001 * 109.68584 * 310.17570 * 23 22 20 49 49 H 1.09000 * 109.25986 * 69.49840 * 24 23 22 50 50 H 1.09003 * 109.26337 * 188.93952 * 24 23 22 51 51 H 1.08001 * 120.56377 * 0.21176 * 26 25 24 52 52 H 1.07996 * 120.57923 * 180.02562 * 27 26 25 53 53 H 1.07994 * 119.69324 * 179.85354 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 0.8422 7 6 5.6048 2.8868 0.1250 8 7 6.1030 4.2593 0.0058 9 6 7.4468 4.5095 0.0875 10 1 8.1395 3.6949 0.2395 11 6 7.9188 5.8100 -0.0250 12 7 7.0751 6.8021 -0.2156 13 14 9.7521 6.1513 0.0858 14 1 9.9948 7.6080 -0.0705 15 1 10.2599 5.7038 1.4077 16 1 10.4588 5.4133 -0.9917 17 7 3.6919 3.5407 -1.2513 18 6 2.4745 4.1076 -1.3656 19 8 1.7004 4.0754 -0.4325 20 6 2.0751 4.7816 -2.6529 21 1 2.7629 5.6021 -2.8577 22 6 0.6587 5.3355 -2.5132 23 6 0.1923 5.8264 -3.8889 24 6 -0.0262 4.6089 -4.7854 25 6 1.1800 3.7092 -4.7584 26 6 1.3134 2.7656 -5.7728 27 6 2.4134 1.9256 -5.7636 28 6 3.3407 2.0521 -4.7461 29 7 3.1827 2.9569 -3.8049 30 6 2.1441 3.7827 -3.7795 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9562 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 3.9329 0.9289 -0.8909 39 1 3.9337 0.9285 0.8891 40 1 6.0351 2.2740 -0.6671 41 1 5.8903 2.4796 1.0950 42 1 5.4808 4.9910 -0.1303 43 1 6.1232 6.6250 -0.2735 44 1 4.3110 3.5668 -1.9976 45 1 -0.0089 4.5505 -2.1580 46 1 0.6573 6.1657 -1.8069 47 1 -0.7420 6.3780 -3.7846 48 1 0.9539 6.4722 -4.3258 49 1 -0.8962 4.0546 -4.4332 50 1 -0.2031 4.9424 -5.8080 51 1 0.5713 2.6901 -6.5538 52 1 2.5447 1.1837 -6.5373 53 1 4.2029 1.4022 -4.7241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755359929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:24 Heat of formation + Delta-G solvation = -37.456742 kcal Electronic energy + Delta-G solvation = -32046.885258 eV Core-core repulsion = 28109.558805 eV Total energy + Delta-G solvation = -3937.326453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.06328 -40.61548 -38.29307 -37.16079 -36.48209 -35.26520 -34.43611 -32.84879 -31.75386 -31.37469 -30.73822 -28.55618 -25.91709 -25.55636 -24.24405 -24.16466 -23.98414 -22.14159 -21.87505 -21.35738 -20.66351 -19.38931 -18.31557 -17.81077 -17.60349 -17.28147 -16.68647 -16.51889 -16.10462 -15.88995 -15.63004 -15.26986 -15.19492 -14.97740 -14.73248 -14.67329 -14.50499 -14.23881 -13.97225 -13.82863 -13.73332 -13.42743 -13.33716 -13.13242 -12.90370 -12.83518 -12.62292 -12.48473 -12.14796 -12.06864 -11.90795 -11.89323 -11.89266 -11.68440 -11.53076 -11.44131 -11.21875 -11.00272 -10.88793 -10.57087 -10.31189 -9.83798 -9.70244 -9.13888 -8.40697 -5.34827 0.12310 0.34576 1.57609 1.67865 1.68249 1.84376 2.29670 2.70543 2.82707 3.17028 3.39879 3.48488 3.52664 3.78928 3.82041 3.86571 3.89481 3.99127 4.08203 4.11708 4.14802 4.21409 4.26228 4.27373 4.34360 4.40356 4.46570 4.52237 4.53657 4.66705 4.76853 4.79502 4.82581 4.86008 4.87297 4.90572 4.94527 4.99744 5.06742 5.07827 5.13815 5.16753 5.25098 5.25850 5.35237 5.36466 5.37501 5.49830 5.56364 5.67483 5.78060 6.46375 6.69574 7.01783 7.05929 7.35207 7.96459 8.09041 9.10127 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.003770 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.041017 B = 7424.870873 C = 8706.833790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.056 0.944 7 C 0.154 3.846 8 N -0.752 5.752 9 C -0.335 4.335 10 H 0.069 0.931 11 C -0.103 4.103 12 N -0.972 5.972 13 Si 1.130 2.870 14 H -0.294 1.294 15 H -0.278 1.278 16 H -0.276 1.276 17 N -0.690 5.690 18 C 0.522 3.478 19 O -0.574 6.574 20 C -0.057 4.057 21 H 0.101 0.899 22 C -0.093 4.093 23 C -0.116 4.116 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.077 4.077 27 C -0.164 4.164 28 C 0.086 3.914 29 N -0.511 5.511 30 C 0.114 3.886 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.360 0.640 43 H 0.240 0.760 44 H 0.410 0.590 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.168 0.832 52 H 0.166 0.834 53 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 -12.525 -13.815 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.135 4.135 4 C -0.151 4.151 5 C 0.040 3.960 6 H 0.074 0.926 7 C 0.028 3.972 8 N -0.397 5.397 9 C -0.466 4.466 10 H 0.087 0.913 11 C -0.294 4.294 12 N -0.620 5.620 13 Si 0.954 3.046 14 H -0.220 1.220 15 H -0.204 1.204 16 H -0.202 1.202 17 N -0.341 5.341 18 C 0.309 3.691 19 O -0.455 6.455 20 C -0.079 4.079 21 H 0.118 0.882 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.183 4.183 28 C -0.073 4.073 29 N -0.220 5.220 30 C -0.021 4.021 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.192 0.808 43 H 0.050 0.950 44 H 0.248 0.752 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.108 0.892 50 H 0.121 0.879 51 H 0.185 0.815 52 H 0.184 0.816 53 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.796 -11.525 -12.496 23.206 hybrid contribution -1.255 -0.769 -0.527 1.564 sum -17.052 -12.294 -13.024 24.729 Atomic orbital electron populations 1.21706 0.95498 1.01916 1.01158 1.21527 0.96276 0.95840 1.02058 1.21466 0.94410 0.96641 1.01021 1.21849 0.96239 0.94263 1.02792 1.21091 0.93709 0.94290 0.86925 0.92582 1.20981 0.91197 0.86404 0.98656 1.42508 1.04451 1.03782 1.88986 1.20400 0.85016 0.95420 1.45779 0.91307 1.27252 1.10457 0.91394 1.00308 1.70999 1.02523 1.33238 1.55234 0.82607 0.69426 0.75425 0.77097 1.21969 1.20440 1.20155 1.46043 1.16226 1.55695 1.16138 1.20509 0.81594 0.77897 0.89132 1.90638 1.52288 1.61130 1.41453 1.20219 1.01123 0.96588 0.89990 0.88157 1.21351 0.92056 1.00803 0.98926 1.21605 1.02855 0.97609 0.93268 1.20525 0.94053 0.94499 1.02102 1.20708 0.97599 0.99103 0.95146 1.21984 0.98043 0.92817 0.97477 1.22461 0.94856 1.00857 1.00133 1.23019 0.99485 0.94777 0.90005 1.67255 1.22484 1.05498 1.26792 1.20486 0.91552 0.95100 0.94927 0.91232 0.93296 0.93896 0.92089 0.91340 0.93840 0.93778 0.91268 0.90152 0.95028 0.94817 0.80842 0.94995 0.75165 0.91533 0.91291 0.88488 0.91517 0.89236 0.87859 0.81466 0.81606 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.43 16 2 C -0.12 -2.83 5.93 30.60 0.18 -2.64 16 3 C -0.10 -2.96 3.82 30.60 0.12 -2.84 16 4 C -0.11 -3.42 4.89 30.60 0.15 -3.27 16 5 C 0.15 5.45 2.42 44.99 0.11 5.56 16 6 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 7 C 0.15 6.55 5.82 86.38 0.50 7.05 16 8 N -0.75 -39.81 5.43 -343.47 -1.87 -41.67 16 9 C -0.33 -19.38 9.99 84.03 0.84 -18.54 16 10 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 11 C -0.10 -6.12 5.50 84.86 0.47 -5.66 16 12 N -0.97 -62.53 13.70 21.65 0.30 -62.24 16 13 Si 1.13 52.87 29.92 68.60 2.05 54.92 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 N -0.69 -25.50 3.87 -442.55 -1.71 -27.21 16 18 C 0.52 19.03 5.63 87.66 0.49 19.52 16 19 O -0.57 -23.31 12.97 -3.04 -0.04 -23.35 16 20 C -0.06 -1.72 2.71 -12.37 -0.03 -1.75 16 21 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 22 C -0.09 -2.31 4.65 30.61 0.14 -2.16 16 23 C -0.12 -1.96 5.98 30.63 0.18 -1.77 16 24 C -0.07 -1.06 5.68 29.71 0.17 -0.89 16 25 C -0.12 -2.46 5.74 -19.85 -0.11 -2.57 16 26 C -0.08 -1.17 9.75 22.54 0.22 -0.95 16 27 C -0.16 -2.55 10.12 22.31 0.23 -2.32 16 28 C 0.09 1.87 11.19 84.74 0.95 2.82 16 29 N -0.51 -14.37 7.54 -184.01 -1.39 -15.75 16 30 C 0.11 3.06 6.20 42.28 0.26 3.32 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 37 H 0.04 1.51 5.65 -2.39 -0.01 1.50 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.36 20.17 6.17 -92.71 -0.57 19.60 16 43 H 0.24 15.63 6.77 -92.71 -0.63 15.01 16 44 H 0.41 15.74 6.93 -92.71 -0.64 15.10 16 45 H 0.07 1.77 7.78 -2.39 -0.02 1.75 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.10 0.97 8.13 -2.39 -0.02 0.95 16 51 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 52 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 53 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -74.99 413.48 2.74 -72.25 By element: Atomic # 1 Polarization: 52.78 SS G_CDS: -0.17 Total: 52.60 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.58 Total: -9.55 kcal Atomic # 7 Polarization: -142.21 SS G_CDS: -4.67 Total: -146.88 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.35 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.05 Total: 54.92 kcal Total: -74.99 2.74 -72.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755359929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.793 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds