Wall clock time and date at job start Wed Apr 1 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 C 1.52999 * 109.47310 * 120.00010 * 2 1 3 5 5 H 1.09004 * 109.46971 * 299.99790 * 4 2 1 6 6 C 1.52998 * 109.47302 * 60.00159 * 4 2 1 7 7 C 1.52998 * 109.47645 * 185.00062 * 6 4 2 8 8 N 1.46497 * 109.47329 * 180.02562 * 7 6 4 9 9 C 1.34772 * 119.99597 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00656 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99644 * 179.97438 * 9 8 7 12 12 N 1.46903 * 109.47346 * 185.53173 * 11 9 8 13 13 C 1.47900 * 110.99934 * 75.82831 * 12 11 9 14 14 C 1.54602 * 102.62488 * 94.66491 * 13 12 11 15 15 C 1.51569 * 102.81850 * 25.60931 * 14 13 12 16 16 C 1.37923 * 131.57291 * 163.77441 * 15 14 13 17 17 C 1.38306 * 120.08051 * 180.27964 * 16 15 14 18 18 C 1.38305 * 119.88298 * 0.02908 * 17 16 15 19 19 C 1.37910 * 120.26847 * 359.85459 * 18 17 16 20 20 C 1.38960 * 107.94567 * 343.80451 * 15 14 13 21 21 N 1.46502 * 109.47281 * 180.02562 * 4 2 1 22 22 C 1.36931 * 120.00147 * 84.72278 * 21 4 2 23 23 H 1.07997 * 120.00224 * 0.27874 * 22 21 4 24 24 C 1.38819 * 119.99999 * 180.27870 * 22 21 4 25 25 N 1.31619 * 119.99719 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99814 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47595 * 59.99829 * 26 24 22 28 28 H 1.48505 * 109.47106 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47349 * 299.99489 * 26 24 22 30 30 H 1.09002 * 109.46739 * 299.99417 * 1 2 3 31 31 H 1.08997 * 109.47052 * 59.99792 * 1 2 3 32 32 H 1.08996 * 109.46725 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47261 * 240.00281 * 2 1 3 34 34 H 1.08996 * 109.47321 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46910 * 300.00218 * 3 2 1 36 36 H 1.09007 * 109.46705 * 59.99960 * 3 2 1 37 37 H 1.09003 * 109.46981 * 305.00149 * 6 4 2 38 38 H 1.09005 * 109.46813 * 64.99630 * 6 4 2 39 39 H 1.09003 * 109.47002 * 300.00074 * 7 6 4 40 40 H 1.08999 * 109.46974 * 59.99739 * 7 6 4 41 41 H 0.96994 * 120.00051 * 359.97438 * 8 7 6 42 42 H 1.08998 * 109.47158 * 305.53088 * 11 9 8 43 43 H 1.08998 * 109.47139 * 65.53014 * 11 9 8 44 44 H 1.09001 * 110.77590 * 212.94701 * 13 12 11 45 45 H 1.09001 * 110.77962 * 336.19127 * 13 12 11 46 46 H 1.09006 * 110.74445 * 143.94083 * 14 13 12 47 47 H 1.08999 * 110.74724 * 267.27309 * 14 13 12 48 48 H 1.07997 * 119.96012 * 0.28198 * 16 15 14 49 49 H 1.07995 * 120.05784 * 179.97438 * 17 16 15 50 50 H 1.07999 * 119.86907 * 179.87064 * 18 17 16 51 51 H 1.07996 * 119.90498 * 180.02562 * 19 18 17 52 52 H 0.97000 * 119.99627 * 265.00094 * 21 4 2 53 53 H 0.97002 * 119.99221 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 6 1.9349 -2.8479 2.5565 8 7 1.4471 -4.2292 2.5562 9 6 1.6873 -5.0288 3.6142 10 8 2.3075 -4.6050 4.5663 11 6 1.1850 -6.4497 3.6142 12 7 1.4566 -7.0652 4.9201 13 6 0.5059 -6.5785 5.9433 14 6 -0.5946 -7.6642 5.9256 15 6 0.1469 -8.8865 5.4223 16 6 -0.1727 -10.2279 5.4529 17 6 0.6979 -11.1603 4.9187 18 6 1.8904 -10.7455 4.3540 19 6 2.2137 -9.4052 4.3187 20 6 1.3398 -8.4590 4.8521 21 7 3.5051 -0.7207 1.2495 22 6 4.1893 0.3566 1.7458 23 1 3.6490 1.2040 2.1411 24 6 5.5775 0.3596 1.7407 25 7 6.2359 -0.6734 1.2594 26 14 6.5108 1.8289 2.4184 27 1 6.1568 2.0242 3.8473 28 1 7.9709 1.5856 2.2994 29 1 6.1468 3.0449 1.6477 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8901 37 1 0.4438 -2.1651 1.1597 38 1 1.9648 -2.7027 0.4073 39 1 3.0212 -2.8465 2.6461 40 1 1.5003 -2.3088 3.3984 41 1 0.9508 -4.5681 1.7950 42 1 0.1115 -6.4556 3.4260 43 1 1.6939 -7.0149 2.8333 44 1 0.9835 -6.5279 6.9219 45 1 0.0993 -5.6070 5.6625 46 1 -0.9845 -7.8352 6.9291 47 1 -1.3966 -7.3898 5.2403 48 1 -1.1040 -10.5505 5.8945 49 1 0.4475 -12.2105 4.9432 50 1 2.5710 -11.4739 3.9388 51 1 3.1462 -9.0878 3.8760 52 1 3.9904 -1.4818 0.8945 53 1 7.2060 -0.6715 1.2563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755553828.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:56 Heat of formation + Delta-G solvation = -12.411251 kcal Electronic energy + Delta-G solvation = -29912.456746 eV Core-core repulsion = 25976.216346 eV Total energy + Delta-G solvation = -3936.240399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95069 -40.43429 -38.95054 -37.59343 -35.93449 -34.89721 -33.48420 -32.69902 -31.53206 -30.75532 -29.85191 -28.22314 -27.46178 -26.44020 -24.66143 -24.01153 -22.59499 -22.27324 -22.12370 -21.28375 -20.62542 -19.11763 -18.12337 -17.88289 -17.26343 -16.92027 -16.75642 -16.39806 -16.19582 -15.99245 -15.67534 -15.30805 -15.22210 -15.08250 -14.62711 -14.59143 -14.44999 -14.25418 -13.86681 -13.57235 -13.50855 -13.32543 -13.19721 -12.93629 -12.88569 -12.83633 -12.66070 -12.48545 -12.44291 -12.18662 -12.18084 -12.02751 -11.89543 -11.79058 -11.69251 -11.38972 -11.19566 -11.05299 -10.77344 -10.33969 -10.06006 -9.72961 -8.89977 -8.86292 -7.88259 -5.12553 0.34932 0.45560 1.45340 1.47730 1.52656 1.64160 2.03265 2.59002 2.71934 2.81789 3.44778 3.59700 3.74137 3.80246 3.92963 3.95886 3.96989 4.11413 4.14737 4.20119 4.23979 4.28635 4.30818 4.42720 4.53497 4.54078 4.54838 4.68540 4.70033 4.72809 4.81969 4.83314 4.90893 4.98257 4.98723 5.05407 5.15766 5.17311 5.25195 5.28263 5.38138 5.41212 5.46094 5.49405 5.51230 5.58113 5.61327 5.72119 5.80472 5.81372 5.85982 6.28880 6.34426 6.62509 7.32419 7.40834 8.18683 8.39891 9.35327 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.002096 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.182443 B =13358.690324 C =14439.806854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.178 3.822 5 H 0.038 0.962 6 C -0.118 4.118 7 C 0.137 3.863 8 N -0.714 5.714 9 C 0.503 3.497 10 O -0.572 6.572 11 C 0.052 3.948 12 N -0.502 5.502 13 C 0.055 3.945 14 C -0.101 4.101 15 C -0.148 4.148 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.129 4.129 20 C 0.068 3.932 21 N -0.730 5.730 22 C -0.211 4.211 23 H 0.074 0.926 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.957 3.043 27 H -0.285 1.285 28 H -0.301 1.301 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.416 0.584 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.143 0.857 49 H 0.151 0.849 50 H 0.147 0.853 51 H 0.118 0.882 52 H 0.371 0.629 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 -20.090 2.411 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.056 0.944 6 C -0.157 4.157 7 C 0.012 3.988 8 N -0.367 5.367 9 C 0.289 3.711 10 O -0.450 6.450 11 C -0.077 4.077 12 N -0.219 5.219 13 C -0.071 4.071 14 C -0.139 4.139 15 C -0.151 4.151 16 C -0.112 4.112 17 C -0.150 4.150 18 C -0.125 4.125 19 C -0.149 4.149 20 C -0.027 4.027 21 N -0.370 5.370 22 C -0.343 4.343 23 H 0.092 0.908 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.787 3.213 27 H -0.211 1.211 28 H -0.227 1.227 29 H -0.203 1.203 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.253 0.747 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.160 0.840 49 H 0.169 0.831 50 H 0.165 0.835 51 H 0.136 0.864 52 H 0.203 0.797 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -20.564 -19.378 3.308 28.449 hybrid contribution 0.865 0.664 -0.180 1.105 sum -19.699 -18.714 3.128 27.351 Atomic orbital electron populations 1.21850 0.93587 1.02461 1.01675 1.21639 0.96126 0.96134 0.98773 1.21774 1.01517 0.96431 0.99899 1.20461 0.83132 0.93793 0.95708 0.94370 1.21989 1.02651 0.95400 0.95624 1.21045 0.98063 0.81097 0.98556 1.45864 1.57668 1.12546 1.20658 1.21088 0.79378 0.88342 0.82260 1.90732 1.41324 1.76470 1.36481 1.22047 1.02389 0.91243 0.92031 1.59545 1.52740 1.03129 1.06502 1.23100 0.90572 0.97996 0.95472 1.21694 0.97744 0.90982 1.03480 1.21240 0.95100 0.95855 1.02891 1.20726 1.00620 0.90634 0.99200 1.21435 0.94195 1.00680 0.98653 1.21230 0.97748 0.94566 0.98915 1.20738 0.98999 0.92695 1.02497 1.19706 0.94767 0.88275 1.00000 1.42615 1.01213 1.19619 1.73519 1.19440 0.88925 0.96407 1.29526 0.90796 1.25391 0.97690 1.00147 1.04046 1.69792 1.06228 1.31801 1.54453 0.85443 0.77393 0.80127 0.78307 1.21139 1.22743 1.20314 0.92911 0.92410 0.90918 0.92823 0.93651 0.93118 0.94068 0.87481 0.91081 0.94918 0.93301 0.74651 0.88113 0.86467 0.90482 0.90143 0.88015 0.88513 0.83955 0.83095 0.83542 0.86374 0.79747 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.85 71.98 0.64 -2.50 16 2 C -0.11 -3.35 2.69 -10.79 -0.03 -3.38 16 3 C -0.14 -4.94 8.26 71.98 0.59 -4.34 16 4 C 0.18 6.43 2.02 44.99 0.09 6.52 16 5 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 6 C -0.12 -3.28 4.65 30.59 0.14 -3.14 16 7 C 0.14 4.48 5.56 86.38 0.48 4.96 16 8 N -0.71 -17.82 5.56 -463.07 -2.57 -20.39 16 9 C 0.50 14.68 7.29 87.66 0.64 15.32 16 10 O -0.57 -23.39 15.96 -3.02 -0.05 -23.43 16 11 C 0.05 1.08 5.23 85.56 0.45 1.52 16 12 N -0.50 -12.46 4.59 -692.96 -3.18 -15.64 16 13 C 0.06 1.19 6.36 86.66 0.55 1.74 16 14 C -0.10 -1.50 6.92 30.67 0.21 -1.29 16 15 C -0.15 -2.62 6.23 -19.49 -0.12 -2.74 16 16 C -0.09 -1.30 10.03 22.21 0.22 -1.07 16 17 C -0.13 -1.66 10.06 22.30 0.22 -1.43 16 18 C -0.11 -1.58 10.02 22.21 0.22 -1.35 16 19 C -0.13 -2.58 10.05 22.47 0.23 -2.36 16 20 C 0.07 1.49 5.50 38.29 0.21 1.70 16 21 N -0.73 -35.24 4.46 -322.94 -1.44 -36.68 16 22 C -0.21 -11.46 7.55 84.04 0.63 -10.82 16 23 H 0.07 3.90 7.38 -2.91 -0.02 3.88 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 25 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 26 Si 0.96 47.63 29.55 68.60 2.03 49.66 16 27 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 29 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.33 6.32 -2.39 -0.02 1.31 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.99 5.99 -2.39 -0.01 1.97 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.11 2.14 6.17 -2.39 -0.01 2.13 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.03 1.42 7.75 -2.39 -0.02 1.40 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.42 6.73 8.47 -92.71 -0.79 5.94 16 42 H 0.10 1.45 7.95 -2.39 -0.02 1.43 16 43 H 0.12 2.15 7.95 -2.39 -0.02 2.13 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.75 7.30 -2.39 -0.02 1.73 16 46 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 49 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 51 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 52 H 0.37 19.62 7.80 -92.71 -0.72 18.90 16 53 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.78 420.42 0.31 -76.46 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.61 Total: 37.28 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.85 Total: -6.92 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -6.91 Total: -133.05 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -76.78 0.31 -76.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553828.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.052 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds