Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47875 * 111.00073 * 2 1 4 4 C 1.54605 * 102.63864 * 265.45707 * 3 2 1 5 5 C 1.51616 * 102.73065 * 334.43125 * 4 3 2 6 6 C 1.37421 * 131.46964 * 196.25112 * 5 4 3 7 7 C 1.39809 * 119.95744 * 179.58548 * 6 5 4 8 8 C 1.47521 * 120.21067 * 179.90391 * 7 6 5 9 9 O 1.21588 * 120.00286 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99830 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47706 * 34.99696 * 11 10 8 13 13 C 1.53004 * 109.46982 * 155.00372 * 11 10 8 14 14 N 1.46507 * 109.46771 * 304.99718 * 13 11 10 15 15 C 1.36935 * 119.99475 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00769 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99575 * 180.02562 * 15 14 13 18 18 N 1.31625 * 119.99922 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46973 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47037 * 119.99844 * 19 17 15 22 22 H 1.48499 * 109.47504 * 239.99826 * 19 17 15 23 23 C 1.53005 * 109.47118 * 274.99773 * 11 10 8 24 24 C 1.52995 * 109.46863 * 60.00434 * 23 11 10 25 25 C 1.53005 * 109.46920 * 180.02562 * 23 11 10 26 26 C 1.52992 * 109.47292 * 300.00359 * 23 11 10 27 27 C 1.39817 * 119.57766 * 0.17128 * 7 6 5 28 28 C 1.37392 * 120.12115 * 359.63074 * 27 7 6 29 29 C 1.39309 * 107.87535 * 16.01451 * 5 4 3 30 30 H 1.08997 * 109.46617 * 60.00205 * 1 2 3 31 31 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47226 * 300.00183 * 1 2 3 33 33 H 1.08994 * 110.77705 * 147.16599 * 3 2 1 34 34 H 1.09003 * 110.77324 * 23.73990 * 3 2 1 35 35 H 1.09002 * 110.75811 * 216.12104 * 4 3 2 36 36 H 1.08999 * 110.91760 * 92.81467 * 4 3 2 37 37 H 1.07995 * 120.02151 * 359.56198 * 6 5 4 38 38 H 0.96995 * 120.00015 * 359.72369 * 10 8 7 39 39 H 1.08995 * 109.47346 * 64.99712 * 13 11 10 40 40 H 1.09001 * 109.46950 * 184.99981 * 13 11 10 41 41 H 0.96998 * 119.99727 * 0.02562 * 14 13 11 42 42 H 0.96999 * 120.00028 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47791 * 60.00227 * 24 23 11 44 44 H 1.09005 * 109.47475 * 179.97438 * 24 23 11 45 45 H 1.08996 * 109.47400 * 299.99650 * 24 23 11 46 46 H 1.08997 * 109.47044 * 60.00271 * 25 23 11 47 47 H 1.09001 * 109.46396 * 180.02562 * 25 23 11 48 48 H 1.08995 * 109.46792 * 299.99580 * 25 23 11 49 49 H 1.09005 * 109.47340 * 60.00089 * 26 23 11 50 50 H 1.09002 * 109.47483 * 179.97438 * 26 23 11 51 51 H 1.09006 * 109.47392 * 299.99898 * 26 23 11 52 52 H 1.07997 * 119.94204 * 179.88033 * 27 7 6 53 53 H 1.07995 * 119.80708 * 180.31322 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3805 0.0000 4 6 2.2318 1.6535 -1.5039 5 6 2.4312 0.2609 -2.0693 6 6 2.9575 -0.1697 -3.2634 7 6 3.0354 -1.5381 -3.5391 8 6 3.5974 -2.0064 -4.8201 9 8 3.9943 -1.2015 -5.6405 10 7 3.6710 -3.3267 -5.0812 11 6 4.2286 -3.7917 -6.3536 12 1 5.0359 -3.1271 -6.6611 13 6 4.7734 -5.2113 -6.1832 14 7 5.7367 -5.2354 -5.0796 15 6 6.3595 -6.4067 -4.7400 16 1 6.1403 -7.3128 -5.2853 17 6 7.2718 -6.4297 -3.6940 18 7 7.5386 -5.3255 -3.0291 19 14 8.1209 -8.0275 -3.2302 20 1 7.6502 -9.1158 -4.1243 21 1 9.5901 -7.8676 -3.3752 22 1 7.7968 -8.3697 -1.8219 23 6 3.1327 -3.7908 -7.4213 24 6 2.5879 -2.3714 -7.5917 25 6 3.7150 -4.2771 -8.7501 26 6 1.9995 -4.7237 -6.9898 27 6 2.5722 -2.4597 -2.5952 28 6 2.0510 -2.0215 -1.4018 29 6 1.9689 -0.6539 -1.1258 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9370 1.4346 0.5525 34 1 1.2666 2.0758 0.4103 35 1 3.1238 2.2622 -1.6525 36 1 1.3607 2.1314 -1.9520 37 1 3.3103 0.5486 -3.9887 38 1 3.3582 -3.9690 -4.4251 39 1 3.9512 -5.8920 -5.9627 40 1 5.2671 -5.5238 -7.1033 41 1 5.9333 -4.4217 -4.5896 42 1 8.1764 -5.3415 -2.2985 43 1 3.3953 -1.7067 -7.8992 44 1 1.8075 -2.3706 -8.3527 45 1 2.1731 -2.0253 -6.6451 46 1 4.1028 -5.2885 -8.6283 47 1 2.9343 -4.2761 -9.5108 48 1 4.5225 -3.6128 -9.0577 49 1 1.5845 -4.3776 -6.0431 50 1 1.2185 -4.7227 -7.7502 51 1 2.3876 -5.7350 -6.8684 52 1 2.6278 -3.5181 -2.8028 53 1 1.6994 -2.7380 -0.6743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755836115.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = -6.635024 kcal Electronic energy + Delta-G solvation = -31347.190927 eV Core-core repulsion = 27411.201004 eV Total energy + Delta-G solvation = -3935.989923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.00486 -41.18012 -38.87893 -37.39979 -36.18657 -34.68384 -33.43129 -32.96662 -31.20547 -30.07574 -29.22013 -28.14779 -27.85693 -26.96572 -25.76035 -24.46762 -23.38160 -22.97235 -22.00173 -21.15078 -19.88016 -19.22907 -18.36989 -17.62554 -17.35937 -16.91447 -16.65729 -16.46580 -16.34024 -15.66954 -15.38216 -15.29511 -15.04140 -14.85468 -14.69716 -14.64272 -14.27999 -14.18967 -13.95606 -13.81721 -13.60625 -13.36803 -13.09826 -13.03131 -12.99186 -12.93706 -12.76802 -12.70528 -12.52237 -12.36195 -12.15859 -12.12052 -12.00808 -11.89849 -11.74493 -11.63114 -11.29376 -11.00727 -10.85669 -10.51227 -9.93136 -9.90216 -8.98278 -8.96434 -7.92576 -5.22247 -0.24284 0.31692 1.48492 1.49157 1.59069 1.80553 2.20964 2.56811 2.61807 2.78587 3.41731 3.51054 3.64075 3.72470 3.78193 3.87746 3.98127 4.04318 4.05536 4.17680 4.24124 4.25390 4.35037 4.44037 4.46258 4.51849 4.57977 4.64708 4.71676 4.77894 4.82715 4.84485 4.90220 4.92480 4.96062 4.97374 5.05097 5.06825 5.09251 5.15119 5.18392 5.24706 5.27412 5.31508 5.33076 5.44129 5.52017 5.54746 5.56341 5.66178 5.87838 6.14586 6.27595 6.58558 7.25670 7.34874 8.08584 8.32356 9.30543 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008663 B = 0.003453 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.444060 B = 8106.002171 C =10393.304043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.510 5.510 3 C 0.049 3.951 4 C -0.105 4.105 5 C -0.162 4.162 6 C -0.040 4.040 7 C -0.162 4.162 8 C 0.560 3.440 9 O -0.573 6.573 10 N -0.698 5.698 11 C 0.158 3.842 12 H 0.054 0.946 13 C 0.144 3.856 14 N -0.743 5.743 15 C -0.240 4.240 16 H 0.080 0.920 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.299 1.299 22 H -0.294 1.294 23 C -0.070 4.070 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.137 4.137 27 C -0.065 4.065 28 C -0.124 4.124 29 C 0.111 3.889 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.405 0.595 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.046 0.954 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.139 0.861 53 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.491 11.311 1.254 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.227 5.227 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.164 4.164 6 C -0.060 4.060 7 C -0.165 4.165 8 C 0.349 3.651 9 O -0.454 6.454 10 N -0.348 5.348 11 C 0.053 3.947 12 H 0.073 0.927 13 C 0.018 3.982 14 N -0.386 5.386 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.226 1.226 22 H -0.221 1.221 23 C -0.071 4.071 24 C -0.178 4.178 25 C -0.197 4.197 26 C -0.194 4.194 27 C -0.084 4.084 28 C -0.144 4.144 29 C 0.013 3.987 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.242 0.758 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.157 0.843 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.086 11.416 1.152 22.269 hybrid contribution 0.950 -0.408 0.135 1.043 sum -18.135 11.008 1.287 21.254 Atomic orbital electron populations 1.22574 0.83402 1.03447 1.02410 1.59948 1.10120 1.15988 1.36626 1.23337 1.02328 0.87084 0.94945 1.21751 1.04062 0.92322 0.96121 1.21226 1.03458 0.97781 0.93980 1.20429 0.95434 0.94185 0.95927 1.19827 1.06454 0.94735 0.95532 1.18291 0.77932 0.82562 0.86337 1.90717 1.50500 1.54938 1.49284 1.45778 1.62745 1.06530 1.19752 1.21128 0.95024 0.94921 0.83604 0.92728 1.21239 0.92023 0.93838 0.91120 1.42563 1.49335 1.08927 1.37791 1.19654 1.16862 0.89265 1.11408 0.90228 1.25531 1.01553 1.00012 0.99430 1.69851 1.39091 1.27957 1.24995 0.85107 0.77575 0.79732 0.77525 1.18782 1.22614 1.22106 1.20853 0.95082 0.96500 0.94709 1.21772 1.00219 0.94988 1.00796 1.21883 1.01041 1.01222 0.95524 1.21878 0.97283 0.98846 1.01427 1.21217 0.94937 0.99599 0.92626 1.20580 1.02669 0.93682 0.97444 1.19955 0.95871 0.93608 0.89219 0.94442 0.90881 0.88354 0.89284 0.86559 0.88650 0.88541 0.85665 0.75804 0.93664 0.94350 0.79567 0.94231 0.94125 0.91795 0.94243 0.91955 0.90569 0.93445 0.93054 0.91105 0.91970 0.84337 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.28 127.69 1.18 1.54 16 2 N -0.51 -9.68 5.31 -713.36 -3.79 -13.46 16 3 C 0.05 0.71 7.00 86.66 0.61 1.32 16 4 C -0.10 -1.74 6.98 30.69 0.21 -1.53 16 5 C -0.16 -3.98 6.21 -19.51 -0.12 -4.10 16 6 C -0.04 -1.18 9.58 22.46 0.22 -0.97 16 7 C -0.16 -5.14 5.88 -20.07 -0.12 -5.25 16 8 C 0.56 20.11 6.12 86.69 0.53 20.65 16 9 O -0.57 -23.45 13.47 -3.99 -0.05 -23.51 16 10 N -0.70 -23.62 3.59 -445.71 -1.60 -25.22 16 11 C 0.16 5.47 1.69 45.00 0.08 5.55 16 12 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 13 C 0.14 5.53 5.10 86.38 0.44 5.97 16 14 N -0.74 -37.08 5.43 -343.44 -1.87 -38.95 16 15 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 16 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 18 N -0.97 -59.64 13.06 21.65 0.28 -59.35 16 19 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.07 -1.90 0.62 -52.18 -0.03 -1.94 16 24 C -0.12 -3.42 7.00 71.98 0.50 -2.92 16 25 C -0.14 -3.40 8.12 71.98 0.58 -2.81 16 26 C -0.14 -3.18 7.97 71.98 0.57 -2.61 16 27 C -0.06 -1.80 9.52 22.45 0.21 -1.58 16 28 C -0.12 -3.09 10.05 22.44 0.23 -2.87 16 29 C 0.11 2.66 5.57 38.56 0.21 2.88 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 0.97 7.76 -2.39 -0.02 0.95 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 3.77 7.65 -2.91 -0.02 3.75 16 38 H 0.41 13.02 6.63 -92.71 -0.61 12.41 16 39 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16 40 H 0.04 1.48 6.71 -2.39 -0.02 1.46 16 41 H 0.37 20.45 7.33 -92.71 -0.68 19.77 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.04 1.31 7.53 -2.39 -0.02 1.29 16 44 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.04 1.22 5.78 -2.39 -0.01 1.20 16 46 H 0.06 1.52 6.54 -2.39 -0.02 1.51 16 47 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.21 7.60 -2.38 -0.02 1.19 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.06 1.46 6.32 -2.38 -0.02 1.44 16 52 H 0.14 3.58 6.40 -2.91 -0.02 3.56 16 53 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -70.53 409.49 1.25 -69.29 By element: Atomic # 1 Polarization: 48.27 SS G_CDS: -0.37 Total: 47.90 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 6.62 Total: -4.64 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -6.97 Total: -136.99 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.53 1.25 -69.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755836115.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.651 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds