Wall clock time and date at job start Wed Apr 1 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46199 * 2 1 4 4 C 1.53041 * 109.45765 * 240.04462 * 2 1 3 5 5 C 1.53626 * 109.24247 * 178.48917 * 4 2 1 6 6 N 1.46929 * 108.54188 * 54.85834 * 5 4 2 7 7 C 1.34775 * 120.63218 * 126.37133 * 6 5 4 8 8 O 1.21549 * 119.99986 * 173.33917 * 7 6 5 9 9 C 1.47864 * 119.99657 * 353.33509 * 7 6 5 10 10 C 1.39616 * 120.11117 * 327.69776 * 9 7 6 11 11 C 1.37985 * 120.00185 * 179.97438 * 10 9 7 12 12 C 1.38242 * 120.23054 * 0.02562 * 11 10 9 13 13 C 1.38988 * 120.22046 * 359.97438 * 12 11 10 14 14 N 1.39709 * 120.00215 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00204 * 5.59129 * 14 13 12 16 16 C 1.46498 * 119.99527 * 185.58481 * 14 13 12 17 17 C 1.38676 * 119.99017 * 0.02562 * 13 12 11 18 18 C 1.46929 * 118.73597 * 306.09298 * 6 5 4 19 19 H 1.09007 * 109.58594 * 294.07198 * 18 6 5 20 20 C 1.53000 * 109.58534 * 173.79076 * 18 6 5 21 21 N 1.46502 * 109.46687 * 78.56642 * 20 18 6 22 22 C 1.36945 * 119.99763 * 184.98494 * 21 20 18 23 23 H 1.07997 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00140 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00238 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00124 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46832 * 89.99965 * 26 24 22 28 28 H 1.48496 * 109.47228 * 209.99829 * 26 24 22 29 29 H 1.48504 * 109.47184 * 330.00506 * 26 24 22 30 30 C 1.53036 * 109.46269 * 119.97661 * 2 1 3 31 31 H 1.09001 * 109.46368 * 300.02583 * 1 2 3 32 32 H 1.08999 * 109.47169 * 60.02234 * 1 2 3 33 33 H 1.08993 * 109.47237 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.49644 * 298.56666 * 4 2 1 35 35 H 1.09001 * 109.49759 * 58.63095 * 4 2 1 36 36 H 1.09000 * 109.73927 * 295.11975 * 5 4 2 37 37 H 1.09002 * 109.66399 * 174.55321 * 5 4 2 38 38 H 1.07993 * 119.99637 * 359.97438 * 10 9 7 39 39 H 1.07998 * 119.88225 * 179.97438 * 11 10 9 40 40 H 1.08003 * 119.88959 * 179.70443 * 12 11 10 41 41 H 1.09001 * 109.47140 * 5.30678 * 15 14 13 42 42 H 1.09004 * 109.47439 * 125.31101 * 15 14 13 43 43 H 1.09000 * 109.46679 * 245.30806 * 15 14 13 44 44 H 1.08998 * 109.47154 * 90.00329 * 16 14 13 45 45 H 1.09000 * 109.46995 * 210.00450 * 16 14 13 46 46 H 1.09002 * 109.47567 * 330.00006 * 16 14 13 47 47 H 1.07993 * 120.11443 * 179.97438 * 17 13 12 48 48 H 1.08992 * 109.47263 * 198.56792 * 20 18 6 49 49 H 1.08998 * 109.47059 * 318.56863 * 20 18 6 50 50 H 0.96996 * 120.00691 * 4.98640 * 21 20 18 51 51 H 0.96992 * 120.00391 * 180.02562 * 25 24 22 52 52 H 1.08999 * 109.49941 * 61.43437 * 30 2 1 53 53 H 1.08994 * 109.50062 * 301.33585 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2502 5 6 3.5756 -0.6846 -1.2645 6 7 4.0679 -1.2489 -0.0003 7 6 4.9621 -2.2572 -0.0006 8 8 5.4531 -2.6344 1.0455 9 6 5.3459 -2.9047 -1.2733 10 6 4.4186 -3.0132 -2.3114 11 6 4.7793 -3.6174 -3.4984 12 6 6.0574 -4.1174 -3.6646 13 6 6.9879 -4.0145 -2.6374 14 7 8.2781 -4.5219 -2.8101 15 6 8.6887 -5.0515 -4.1128 16 6 9.2204 -4.5243 -1.6884 17 6 6.6353 -3.4091 -1.4406 18 6 3.5714 -0.6888 1.2640 19 1 3.9144 0.3407 1.3673 20 6 4.0941 -1.5235 2.4350 21 7 5.4862 -1.1597 2.7108 22 6 6.2001 -1.8494 3.6542 23 1 5.7369 -2.6618 4.1945 24 6 7.5188 -1.5044 3.9160 25 7 8.0832 -0.5140 3.2579 26 14 8.4928 -2.4457 5.2024 27 1 9.1812 -3.5939 4.5597 28 1 9.5009 -1.5451 5.8170 29 1 7.5705 -2.9467 6.2530 30 6 2.0399 -0.7209 1.2499 31 1 -0.3632 0.5143 0.8898 32 1 -0.3633 0.5135 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6977 -1.7554 -1.2386 35 1 1.6567 -0.2207 -2.1399 36 1 3.9188 0.3452 -1.3632 37 1 3.9486 -1.2779 -2.0994 38 1 3.4191 -2.6242 -2.1854 39 1 4.0604 -3.7006 -4.3000 40 1 6.3324 -4.5935 -4.5942 41 1 7.8955 -4.8809 -4.8407 42 1 9.5973 -4.5463 -4.4405 43 1 8.8788 -6.1213 -4.0265 44 1 9.1240 -5.4582 -1.1348 45 1 10.2378 -4.4305 -2.0683 46 1 9.0008 -3.6858 -1.0275 47 1 7.3566 -3.3284 -0.6410 48 1 3.4861 -1.3304 3.3187 49 1 4.0388 -2.5818 2.1800 50 1 5.9023 -0.4303 2.2253 51 1 9.0048 -0.2732 3.4406 52 1 1.6979 -1.7558 1.2380 53 1 1.6574 -0.2211 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264006708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:23 Heat of formation + Delta-G solvation = 47.776295 kcal Electronic energy + Delta-G solvation = -32090.592878 eV Core-core repulsion = 28156.962407 eV Total energy + Delta-G solvation = -3933.630471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.83185 -40.24304 -38.46984 -37.31522 -36.24289 -34.77542 -33.86675 -32.09114 -31.70669 -30.76346 -29.44463 -28.90347 -27.15580 -25.82002 -24.98895 -24.38977 -23.99680 -22.41121 -22.13351 -21.06835 -20.14595 -19.05036 -18.37451 -17.44882 -17.02577 -16.83196 -16.59271 -16.56117 -15.99701 -15.87928 -15.51685 -15.33315 -15.12562 -14.84146 -14.72599 -14.56401 -14.46382 -14.25459 -14.00101 -13.76171 -13.44179 -13.36913 -13.21249 -13.08252 -12.95145 -12.83597 -12.81006 -12.66430 -12.52361 -12.25890 -12.14485 -11.98891 -11.89917 -11.83786 -11.62314 -11.32507 -11.18598 -10.91539 -10.61629 -9.96230 -9.85650 -9.38108 -8.71035 -8.22816 -7.84604 -5.04909 0.10658 0.60201 1.39241 1.43569 1.50978 1.98761 2.15986 2.27183 2.60003 2.97862 3.47720 3.56602 3.78490 3.87134 3.93812 3.95833 4.03240 4.10668 4.22153 4.29561 4.33377 4.40137 4.41788 4.46790 4.47749 4.56721 4.58216 4.69826 4.72437 4.77509 4.80475 4.81720 4.86627 4.90326 4.95029 4.99375 5.03481 5.07907 5.13563 5.16960 5.24417 5.27891 5.33937 5.45035 5.50883 5.51943 5.56914 5.60286 5.82051 5.91860 6.26727 6.36521 6.51478 6.65624 7.41358 7.53115 8.21177 8.45078 9.40663 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.006233 B = 0.005595 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4490.937110 B = 5003.053400 C = 9110.668218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.120 4.120 5 C 0.071 3.929 6 N -0.602 5.602 7 C 0.514 3.486 8 O -0.511 6.511 9 C -0.090 4.090 10 C -0.160 4.160 11 C -0.066 4.066 12 C -0.180 4.180 13 C 0.200 3.800 14 N -0.646 5.646 15 C 0.088 3.912 16 C 0.091 3.909 17 C -0.176 4.176 18 C 0.148 3.852 19 H 0.054 0.946 20 C 0.160 3.840 21 N -0.708 5.708 22 C -0.198 4.198 23 H 0.057 0.943 24 C -0.088 4.088 25 N -0.977 5.977 26 Si 0.965 3.035 27 H -0.296 1.296 28 H -0.292 1.292 29 H -0.272 1.272 30 C -0.110 4.110 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.090 0.910 48 H 0.009 0.991 49 H 0.029 0.971 50 H 0.364 0.636 51 H 0.244 0.756 52 H 0.064 0.936 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -4.413 -23.073 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.050 4.050 6 N -0.337 5.337 7 C 0.301 3.699 8 O -0.386 6.386 9 C -0.093 4.093 10 C -0.180 4.180 11 C -0.085 4.085 12 C -0.202 4.202 13 C 0.098 3.902 14 N -0.358 5.358 15 C -0.054 4.054 16 C -0.053 4.053 17 C -0.200 4.200 18 C 0.045 3.955 19 H 0.072 0.928 20 C 0.034 3.966 21 N -0.347 5.347 22 C -0.331 4.331 23 H 0.075 0.925 24 C -0.278 4.278 25 N -0.631 5.631 26 Si 0.796 3.204 27 H -0.224 1.224 28 H -0.219 1.219 29 H -0.197 1.197 30 C -0.149 4.149 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.175 0.825 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.026 0.974 49 H 0.046 0.954 50 H 0.195 0.805 51 H 0.053 0.947 52 H 0.083 0.917 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.219 -4.839 -22.371 25.946 hybrid contribution 1.634 -0.069 1.463 2.194 sum -10.586 -4.908 -20.908 23.944 Atomic orbital electron populations 1.21756 0.93251 1.02169 1.02411 1.21107 0.96857 0.99170 0.93594 0.91191 1.22045 0.92946 1.01834 0.98933 1.22852 0.96001 0.99806 0.86373 1.47871 1.43520 1.34824 1.07461 1.19076 0.79733 0.81567 0.89486 1.91173 1.51524 1.63325 1.32547 1.19831 0.95031 1.00233 0.94240 1.21545 1.00129 1.03345 0.93005 1.21291 0.95808 0.94214 0.97147 1.21209 0.93482 1.06356 0.99191 1.17901 0.86221 0.92692 0.93397 1.46524 1.09941 1.66979 1.12343 1.21898 1.01619 0.98788 0.83078 1.21608 0.93544 1.00734 0.89372 1.20661 0.96781 1.04648 0.97872 1.21347 0.95131 0.95996 0.83066 0.92847 1.20977 0.84970 0.97339 0.93335 1.42235 1.09238 1.38355 1.44900 1.19403 0.94083 1.09372 1.10229 0.92450 1.25350 0.98025 1.00956 1.03454 1.69827 1.12860 1.33294 1.47146 0.85221 0.78594 0.77460 0.79138 1.22450 1.21858 1.19675 1.21915 0.91478 1.01659 0.99872 0.92747 0.91019 0.92508 0.91017 0.87660 0.92059 0.85806 0.82484 0.81176 0.82471 0.88720 0.91567 0.92065 0.93654 0.89174 0.93976 0.89202 0.97379 0.95361 0.80485 0.94733 0.91741 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 2 C -0.09 -1.66 2.68 -10.77 -0.03 -1.69 16 3 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 4 C -0.12 -1.95 5.01 30.82 0.15 -1.79 16 5 C 0.07 1.64 5.55 86.51 0.48 2.12 16 6 N -0.60 -20.66 2.97 -797.53 -2.37 -23.02 16 7 C 0.51 21.72 7.15 86.79 0.62 22.34 16 8 O -0.51 -27.77 10.62 -3.87 -0.04 -27.81 16 9 C -0.09 -3.13 5.47 -20.10 -0.11 -3.24 16 10 C -0.16 -3.81 7.42 22.54 0.17 -3.64 16 11 C -0.07 -1.19 10.02 22.21 0.22 -0.96 16 12 C -0.18 -3.65 9.26 22.45 0.21 -3.44 16 13 C 0.20 5.68 6.53 38.17 0.25 5.93 16 14 N -0.65 -16.17 3.41 -747.42 -2.55 -18.71 16 15 C 0.09 1.33 10.59 127.77 1.35 2.68 16 16 C 0.09 2.46 10.35 127.77 1.32 3.78 16 17 C -0.18 -6.56 8.80 22.67 0.20 -6.36 16 18 C 0.15 5.39 2.93 44.97 0.13 5.52 16 19 H 0.05 2.09 8.04 -2.38 -0.02 2.07 16 20 C 0.16 7.63 4.95 86.38 0.43 8.06 16 21 N -0.71 -41.53 3.64 -343.46 -1.25 -42.78 16 22 C -0.20 -12.68 9.36 84.03 0.79 -11.90 16 23 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 24 C -0.09 -5.66 5.50 84.86 0.47 -5.19 16 25 N -0.98 -66.27 13.06 21.65 0.28 -65.99 16 26 Si 0.97 51.92 29.55 68.60 2.03 53.95 16 27 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 28 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 29 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 30 C -0.11 -2.88 4.58 30.67 0.14 -2.74 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.15 7.64 -2.39 -0.02 1.13 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 2.59 3.47 -2.46 -0.01 2.58 16 38 H 0.16 2.96 4.89 -2.91 -0.01 2.95 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.16 2.06 5.82 -2.91 -0.02 2.04 16 41 H 0.09 1.06 5.38 -2.39 -0.01 1.04 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 46 H 0.04 1.43 6.00 -2.39 -0.01 1.41 16 47 H 0.09 4.10 5.93 -2.91 -0.02 4.09 16 48 H 0.01 0.40 8.02 -2.39 -0.02 0.38 16 49 H 0.03 1.49 5.94 -2.45 -0.01 1.47 16 50 H 0.36 22.91 7.60 -92.71 -0.70 22.21 16 51 H 0.24 15.99 8.31 -92.71 -0.77 15.22 16 52 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 53 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -86.81 400.47 3.77 -83.05 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.21 Total: 33.13 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 7.45 Total: 8.19 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -5.88 Total: -150.50 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.81 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.03 Total: 53.95 kcal Total: -86.81 3.77 -83.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264006708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.822 kcal (2) G-P(sol) polarization free energy of solvation -86.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds