Wall clock time and date at job start Wed Apr 1 2020 04:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00496 * 2 1 4 4 C 1.50701 * 109.47024 * 66.04461 * 3 2 1 5 5 O 1.21282 * 120.00007 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99778 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99817 * 180.02562 * 6 4 3 8 8 H 1.09005 * 110.01391 * 325.05957 * 7 6 4 9 9 C 1.53871 * 110.03494 * 86.45192 * 7 6 4 10 10 C 1.54269 * 106.59815 * 119.33499 * 9 7 6 11 11 C 1.54881 * 104.19471 * 336.38864 * 10 9 7 12 12 H 1.09003 * 110.76177 * 279.44322 * 11 10 9 13 13 C 1.53005 * 110.75931 * 156.25841 * 11 10 9 14 14 N 1.46505 * 109.46904 * 66.45247 * 13 11 10 15 15 C 1.36931 * 119.99788 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.54269 * 110.07286 * 203.64699 * 7 6 4 24 24 C 1.46906 * 110.99612 * 236.04448 * 2 1 3 25 25 C 1.50694 * 109.47006 * 293.95558 * 24 2 1 26 26 C 1.38231 * 120.00334 * 269.72145 * 25 24 2 27 27 C 1.38236 * 120.00594 * 179.76963 * 26 25 24 28 28 C 1.38240 * 119.99510 * 0.48635 * 27 26 25 29 29 C 1.38232 * 119.99761 * 359.79444 * 28 27 26 30 30 C 1.38230 * 120.00483 * 359.94907 * 29 28 27 31 31 H 1.09000 * 109.47154 * 59.99876 * 1 2 3 32 32 H 1.08999 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46679 * 300.00092 * 1 2 3 34 34 H 1.09001 * 109.47125 * 306.04673 * 3 2 1 35 35 H 1.09002 * 109.47490 * 186.04836 * 3 2 1 36 36 H 0.97002 * 119.99990 * 0.02562 * 6 4 3 37 37 H 1.08993 * 110.03526 * 0.04698 * 9 7 6 38 38 H 1.09002 * 110.03396 * 238.61621 * 9 7 6 39 39 H 1.09004 * 110.48517 * 217.70846 * 10 9 7 40 40 H 1.08997 * 110.59695 * 95.12673 * 10 9 7 41 41 H 1.09003 * 109.46946 * 306.46007 * 13 11 10 42 42 H 1.08993 * 109.47679 * 186.45549 * 13 11 10 43 43 H 0.97000 * 119.99792 * 0.02562 * 14 13 11 44 44 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 45 45 H 1.08999 * 110.48849 * 145.62367 * 23 7 6 46 46 H 1.08997 * 110.48674 * 22.97221 * 23 7 6 47 47 H 1.09005 * 109.46789 * 53.95694 * 24 2 1 48 48 H 1.08996 * 109.46898 * 173.95655 * 24 2 1 49 49 H 1.08008 * 119.99962 * 0.02562 * 26 25 24 50 50 H 1.08003 * 120.00701 * 180.25831 * 27 26 25 51 51 H 1.08001 * 119.99889 * 179.76870 * 28 27 26 52 52 H 1.07998 * 119.99716 * 179.97438 * 29 28 27 53 53 H 1.08001 * 120.00283 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 8 1.0055 1.4453 2.1411 6 7 2.0182 3.3201 1.5233 7 6 1.6702 3.9768 2.7857 8 1 0.6916 3.6375 3.1253 9 6 2.7350 3.6666 3.8523 10 6 3.3386 5.0206 4.2792 11 6 3.0710 5.9533 3.0720 12 1 3.8118 5.7933 2.2885 13 6 3.0577 7.4188 3.5114 14 7 4.3987 7.8079 3.9548 15 6 4.6306 9.0830 4.3968 16 1 3.8248 9.8018 4.4190 17 6 5.8999 9.4500 4.8223 18 7 6.8818 8.5740 4.7957 19 14 6.2144 11.1873 5.4326 20 1 5.3485 11.4638 6.6068 21 1 7.6400 11.3235 5.8251 22 1 5.9048 12.1558 4.3503 23 6 1.6639 5.5085 2.6017 24 6 1.9954 -0.7661 -1.1376 25 6 1.6368 -2.2204 -0.9728 26 6 2.4963 -3.0730 -0.3057 27 6 2.1652 -4.4061 -0.1503 28 6 0.9791 -4.8888 -0.6710 29 6 0.1222 -4.0375 -1.3432 30 6 0.4509 -2.7033 -1.4939 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.5612 1.9273 -0.8309 35 1 3.0798 1.3443 -0.1083 36 1 2.5230 3.8015 0.8492 37 1 3.5112 3.0282 3.4305 38 1 2.2732 3.1768 4.7096 39 1 4.4099 4.9222 4.4553 40 1 2.8396 5.3987 5.1714 41 1 2.3525 7.5453 4.3330 42 1 2.7556 8.0467 2.6733 43 1 5.1224 7.1622 3.9351 44 1 7.7689 8.8306 5.0926 45 1 0.8924 5.9641 3.2224 46 1 1.5130 5.7661 1.5534 47 1 1.5610 -0.3872 -2.0628 48 1 3.0796 -0.6612 -1.1757 49 1 3.4248 -2.6967 0.0979 50 1 2.8348 -5.0713 0.3746 51 1 0.7221 -5.9311 -0.5529 52 1 -0.8042 -4.4147 -1.7504 53 1 -0.2184 -2.0383 -2.0195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507422371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:41 Heat of formation + Delta-G solvation = -20.903458 kcal Electronic energy + Delta-G solvation = -29165.664243 eV Core-core repulsion = 25229.055594 eV Total energy + Delta-G solvation = -3936.608649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.15997 -40.27827 -39.27124 -37.52409 -36.37820 -34.63197 -32.99873 -32.59935 -31.77131 -30.18926 -29.79405 -28.34051 -27.84319 -26.13661 -24.11881 -23.91762 -23.36131 -21.85486 -21.44504 -21.06633 -20.96561 -19.08803 -18.25744 -17.54201 -17.30537 -16.84518 -16.76459 -16.36720 -16.26613 -15.95273 -15.81408 -15.53211 -15.21417 -15.13578 -14.93454 -14.53508 -14.43392 -14.24091 -13.95689 -13.66485 -13.56530 -13.36541 -13.11458 -13.04524 -12.76606 -12.74326 -12.65677 -12.49867 -12.26811 -12.14382 -12.04999 -11.90456 -11.82157 -11.80062 -11.60492 -11.49757 -11.44332 -10.88899 -10.71272 -9.99354 -9.76416 -9.69531 -9.22290 -8.95961 -7.93229 -5.21130 0.44277 0.54659 1.48058 1.50924 1.57070 1.72711 2.14969 2.57646 2.82575 3.26007 3.40139 3.59598 3.60631 3.83497 3.87591 3.93531 3.98550 4.19457 4.20624 4.27253 4.33368 4.34317 4.41539 4.46608 4.50624 4.55171 4.56883 4.61084 4.62892 4.66198 4.75931 4.78295 4.80507 4.82598 4.90456 5.07743 5.09560 5.13750 5.15520 5.19790 5.20650 5.26752 5.39731 5.49911 5.57757 5.58778 5.66244 5.68490 5.72137 5.94347 6.05098 6.16815 6.29298 6.68499 7.35774 7.38320 8.13989 8.36657 9.30094 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.001498 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.360555 B =18682.173033 C =19041.098460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.038 3.962 4 C 0.510 3.490 5 O -0.567 6.567 6 N -0.714 5.714 7 C 0.152 3.848 8 H 0.079 0.921 9 C -0.123 4.123 10 C -0.109 4.109 11 C -0.088 4.088 12 H 0.075 0.925 13 C 0.157 3.843 14 N -0.744 5.744 15 C -0.247 4.247 16 H 0.074 0.926 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.277 1.277 23 C -0.108 4.108 24 C 0.096 3.904 25 C -0.089 4.089 26 C -0.114 4.114 27 C -0.133 4.133 28 C -0.130 4.130 29 C -0.131 4.131 30 C -0.122 4.122 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.413 0.587 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.017 0.983 42 H 0.022 0.978 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.125 0.875 50 H 0.134 0.866 51 H 0.137 0.863 52 H 0.138 0.862 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 -24.567 -17.461 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.262 5.262 3 C -0.092 4.092 4 C 0.297 3.703 5 O -0.445 6.445 6 N -0.367 5.367 7 C 0.047 3.953 8 H 0.098 0.902 9 C -0.161 4.161 10 C -0.147 4.147 11 C -0.107 4.107 12 H 0.094 0.906 13 C 0.031 3.969 14 N -0.386 5.386 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.203 1.203 23 C -0.146 4.146 24 C -0.031 4.031 25 C -0.089 4.089 26 C -0.133 4.133 27 C -0.151 4.151 28 C -0.148 4.148 29 C -0.149 4.149 30 C -0.141 4.141 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.040 0.960 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.143 0.857 50 H 0.152 0.848 51 H 0.155 0.845 52 H 0.156 0.844 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.639 -25.032 -16.394 33.311 hybrid contribution 0.779 1.312 -0.140 1.532 sum -13.859 -23.720 -16.534 32.064 Atomic orbital electron populations 1.22493 0.86859 1.02307 1.00834 1.61564 1.08886 1.12236 1.43552 1.22055 1.03491 0.89449 0.94206 1.21020 0.78434 0.81454 0.89359 1.90669 1.41060 1.64686 1.48067 1.46095 1.57527 1.13465 1.19590 1.21391 0.97891 0.92351 0.83697 0.90243 1.22487 0.98149 0.96802 0.98702 1.22249 0.99879 0.94627 0.97963 1.22184 0.97815 0.93258 0.97413 0.90638 1.20834 0.86424 0.93746 0.95884 1.42550 1.07496 1.10746 1.77856 1.19629 0.94608 0.89842 1.33825 0.90773 1.25544 0.95965 1.01811 1.03424 1.69808 1.01276 1.35588 1.55315 0.85229 0.76290 0.80005 0.78350 1.20560 1.22185 1.20299 1.22568 0.96280 0.92682 1.03113 1.21115 1.01204 0.89311 0.91426 1.19856 0.95184 0.95326 0.98549 1.21236 1.00090 0.93803 0.98155 1.21432 0.97726 0.95863 1.00118 1.21459 0.94544 1.00772 0.98071 1.21412 1.00349 0.93691 0.99450 1.21271 0.96381 0.96163 1.00236 0.94661 0.91422 0.91894 0.89303 0.85749 0.75020 0.91890 0.91950 0.93473 0.92551 0.96474 0.95984 0.79422 0.94081 0.89619 0.88844 0.92411 0.88688 0.85732 0.84841 0.84488 0.84432 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.86 127.69 1.13 1.55 16 2 N -0.54 -9.30 4.49 -931.65 -4.18 -13.49 16 3 C 0.04 0.53 5.45 85.56 0.47 1.00 16 4 C 0.51 10.67 7.54 87.66 0.66 11.33 16 5 O -0.57 -16.95 13.99 -3.03 -0.04 -16.99 16 6 N -0.71 -12.83 4.95 -439.10 -2.17 -15.00 16 7 C 0.15 3.36 3.22 45.72 0.15 3.50 16 8 H 0.08 1.94 7.61 -2.38 -0.02 1.92 16 9 C -0.12 -3.20 6.59 31.32 0.21 -2.99 16 10 C -0.11 -3.37 5.97 31.67 0.19 -3.18 16 11 C -0.09 -2.57 2.96 -9.50 -0.03 -2.60 16 12 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 13 C 0.16 6.05 5.69 86.38 0.49 6.54 16 14 N -0.74 -37.52 5.45 -343.44 -1.87 -39.39 16 15 C -0.25 -13.84 9.99 84.04 0.84 -13.00 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 19 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.11 -2.31 5.88 31.67 0.19 -2.13 16 24 C 0.10 1.24 5.12 85.55 0.44 1.68 16 25 C -0.09 -1.38 4.89 -19.87 -0.10 -1.47 16 26 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 27 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 28 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 29 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 30 C -0.12 -1.72 7.90 22.27 0.18 -1.54 16 31 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 1.24 5.89 -2.39 -0.01 1.23 16 33 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 34 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 35 H 0.12 1.24 7.93 -2.39 -0.02 1.22 16 36 H 0.41 5.25 8.56 -92.71 -0.79 4.45 16 37 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.86 8.01 -2.39 -0.02 1.84 16 41 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.37 20.06 7.53 -92.71 -0.70 19.36 16 44 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 45 H 0.09 1.81 8.05 -2.39 -0.02 1.79 16 46 H 0.09 1.61 7.98 -2.39 -0.02 1.59 16 47 H 0.06 0.59 8.07 -2.38 -0.02 0.57 16 48 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 49 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 50 H 0.13 1.50 8.06 -2.91 -0.02 1.47 16 51 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 52 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 53 H 0.13 1.43 7.98 -2.91 -0.02 1.40 16 Total: -1.00 -72.86 422.79 -0.39 -73.25 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.60 Total: 34.15 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.16 Total: -11.59 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -7.94 Total: -126.98 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.04 Total: -16.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.86 -0.39 -73.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507422371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds