Wall clock time and date at job start Wed Apr 1 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99620 * 2 1 4 4 H 1.48505 * 109.47138 * 239.99772 * 3 2 1 5 5 H 1.48498 * 109.47553 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47007 * 120.00376 * 3 2 1 7 7 C 1.37878 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00419 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99498 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47466 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99721 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00055 * 179.97438 * 11 10 9 14 14 N 1.40107 * 119.99540 * 180.02562 * 13 11 10 15 15 C 1.34781 * 119.99416 * 180.02562 * 14 13 11 16 16 O 1.21710 * 120.00283 * 359.97438 * 15 14 13 17 17 C 1.46499 * 119.99478 * 179.97438 * 15 14 13 18 18 C 1.36680 * 125.44698 * 179.97438 * 17 15 14 19 19 C 1.37425 * 113.31246 * 179.97438 * 18 17 15 20 20 C 1.33967 * 115.07643 * 0.02562 * 19 18 17 21 21 Br 1.89103 * 124.52779 * 179.97438 * 20 19 18 22 22 S 1.70620 * 110.94347 * 359.97438 * 20 19 18 23 23 H 0.97004 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47311 * 60.00269 * 9 7 2 25 25 H 1.09004 * 109.46966 * 300.00032 * 9 7 2 26 26 H 1.08999 * 109.47251 * 59.99758 * 10 9 7 27 27 H 1.09008 * 109.46753 * 300.00083 * 10 9 7 28 28 H 0.96995 * 120.00126 * 359.97438 * 13 11 10 29 29 H 0.96995 * 120.00334 * 359.97438 * 14 13 11 30 30 H 1.08002 * 123.35040 * 0.02562 * 18 17 15 31 31 H 1.07992 * 122.45892 * 179.73102 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2790 -4.9672 -0.0021 13 7 2.1658 -6.1343 -0.0018 14 7 1.4653 -7.3476 -0.0029 15 6 2.1393 -8.5148 -0.0030 16 8 3.3564 -8.5148 -0.0026 17 6 1.4068 -9.7835 -0.0037 18 6 1.9747 -11.0267 -0.0043 19 6 1.0528 -12.0458 -0.0042 20 6 -0.2280 -11.6529 -0.0041 21 35 -1.7097 -12.8278 -0.0046 22 16 -0.3436 -9.9506 -0.0033 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8906 28 1 3.1358 -6.1342 -0.0022 29 1 0.4953 -7.3477 -0.0029 30 1 3.0420 -11.1919 -0.0041 31 1 1.3397 -13.0869 -0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290952207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:42 Heat of formation + Delta-G solvation = -11.843902 kcal Electronic energy + Delta-G solvation = -18418.881799 eV Core-core repulsion = 15067.507297 eV Total energy + Delta-G solvation = -3351.374502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 345.977 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43892 -39.07945 -37.97458 -35.34859 -33.57731 -32.67623 -31.85970 -30.73397 -28.96348 -25.92379 -25.00152 -22.56612 -21.89281 -20.68121 -19.55885 -18.74667 -17.78227 -16.95691 -16.39665 -15.92178 -15.78241 -15.24490 -14.88827 -14.51207 -14.36769 -13.92660 -13.55082 -13.50586 -12.96920 -12.68240 -12.26206 -11.65859 -11.47050 -11.28331 -11.25071 -10.94692 -10.94427 -10.69852 -10.59763 -10.06705 -9.85146 -9.48238 -9.30129 -9.18946 -9.18308 -8.41449 -8.34066 -6.01749 -4.06722 -0.23149 0.41828 1.08409 1.22070 1.73033 1.74366 2.63181 3.02030 3.32235 3.37170 3.38712 3.86391 4.39857 4.48628 4.58372 4.76948 5.24572 5.26736 5.33603 5.44509 5.65881 6.06049 6.06651 6.53281 6.58903 6.77639 7.54326 7.66182 7.71831 7.74623 7.98471 8.29280 8.51196 9.00590 9.57334 11.09061 Molecular weight = 345.98amu Principal moments of inertia in cm(-1) A = 0.030845 B = 0.001888 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.556955 B =14823.084324 C =15710.195206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.531 6.531 13 N -0.533 5.533 14 N -0.517 5.517 15 C 0.588 3.412 16 O -0.527 6.527 17 C -0.247 4.247 18 C -0.049 4.049 19 C -0.107 4.107 20 C -0.226 4.226 21 Br 0.019 6.981 22 S 0.273 5.727 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.431 0.569 29 H 0.428 0.572 30 H 0.165 0.835 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -30.412 -0.014 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.404 6.404 13 N -0.285 5.285 14 N -0.262 5.262 15 C 0.373 3.627 16 O -0.404 6.404 17 C -0.371 4.371 18 C -0.083 4.083 19 C -0.142 4.142 20 C -0.425 4.425 21 Br 0.103 6.897 22 S 0.540 5.460 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.273 0.727 29 H 0.269 0.731 30 H 0.182 0.818 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.899 -29.647 -0.014 29.788 hybrid contribution 1.856 -0.075 0.000 1.858 sum -1.043 -29.721 -0.014 29.740 Atomic orbital electron populations 1.69977 1.06078 1.26855 1.49846 1.25017 0.94847 0.99296 0.95149 0.86619 0.79523 0.82987 0.78614 1.20189 1.21279 1.20196 1.21141 0.92996 0.90773 1.51904 0.92436 1.18947 0.93090 0.89043 0.98917 1.21925 1.00952 0.89572 1.03490 1.22210 0.89203 0.83905 0.74493 1.90701 1.14146 1.86813 1.48718 1.45619 1.08961 0.95202 1.78727 1.44610 1.08950 0.97766 1.74896 1.16780 0.87041 0.81044 0.77800 1.90869 1.12159 1.86478 1.50930 1.24551 0.97826 0.97307 1.17397 1.20716 1.01985 0.88868 0.96733 1.20080 0.89790 1.02012 1.02300 1.25923 0.98356 1.01136 1.17066 1.96797 1.35887 1.59327 1.97724 1.83477 1.00808 0.95897 1.65784 0.92800 0.95558 0.95568 0.89304 0.89311 0.72654 0.73061 0.81752 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.23 5.64 -27.89 -0.16 -2.39 16 11 C 0.51 9.27 7.95 -10.99 -0.09 9.18 16 12 O -0.53 -11.46 15.82 5.55 0.09 -11.37 16 13 N -0.53 -7.81 6.26 31.22 0.20 -7.61 16 14 N -0.52 -6.95 6.26 30.22 0.19 -6.76 16 15 C 0.59 7.47 7.90 -12.93 -0.10 7.37 16 16 O -0.53 -7.90 16.68 5.18 0.09 -7.82 16 17 C -0.25 -2.47 6.45 -36.82 -0.24 -2.70 16 18 C -0.05 -0.40 10.01 -40.44 -0.40 -0.81 16 19 C -0.11 -0.76 10.05 -41.38 -0.42 -1.17 16 20 C -0.23 -1.77 6.70 29.23 0.20 -1.57 16 21 Br 0.02 0.13 34.04 -68.01 -2.32 -2.18 16 22 S 0.27 2.30 22.14 -107.50 -2.38 -0.08 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 28 H 0.43 5.52 8.00 -182.60 -1.46 4.06 16 29 H 0.43 5.46 7.11 -182.60 -1.30 4.17 16 30 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -33.23 318.62 -10.19 -43.42 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.83 Total: 1.89 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.74 Total: -4.50 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 1.12 Total: -40.36 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.38 Total: -0.08 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -2.32 Total: -2.18 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.23 -10.19 -43.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290952207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds