Wall clock time and date at job start Wed Apr 1 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31714 * 122.22657 * 2 1 4 4 C 1.30019 * 117.08478 * 180.02562 * 3 2 1 5 5 N 1.38501 * 125.36806 * 180.02562 * 4 3 2 6 6 S 1.65597 * 120.00013 * 179.97438 * 5 4 3 7 7 O 1.42109 * 106.40120 * 178.53984 * 6 5 4 8 8 O 1.42098 * 106.40593 * 311.46014 * 6 5 4 9 9 C 1.76201 * 107.21902 * 65.00170 * 6 5 4 10 10 C 1.41384 * 126.58052 * 89.99520 * 9 6 5 11 11 C 1.34505 * 106.84082 * 179.97438 * 10 9 6 12 12 O 1.34308 * 108.42174 * 0.02562 * 11 10 9 13 13 C 1.34296 * 109.47582 * 359.76636 * 12 11 10 14 14 S 1.76141 * 109.26586 * 359.97438 * 4 3 2 15 15 C 1.34564 * 122.22336 * 180.02562 * 2 1 3 16 16 S 1.76197 * 125.91540 * 359.71057 * 15 2 1 17 17 C 1.76208 * 99.99904 * 179.97438 * 16 15 2 18 18 H 1.08000 * 120.00104 * 0.02562 * 17 16 15 19 19 C 1.38380 * 119.99964 * 180.02562 * 17 16 15 20 20 N 1.31846 * 120.00042 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99829 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47511 * 359.97438 * 21 19 17 23 23 H 1.48510 * 109.46929 * 120.00031 * 21 19 17 24 24 H 1.48501 * 109.47166 * 239.99751 * 21 19 17 25 25 H 1.09006 * 109.46808 * 269.97624 * 1 2 3 26 26 H 1.08998 * 109.46936 * 29.97285 * 1 2 3 27 27 H 1.08996 * 109.47122 * 149.98107 * 1 2 3 28 28 H 0.96997 * 119.99838 * 0.02562 * 5 4 3 29 29 H 1.08002 * 126.57741 * 359.93656 * 10 9 6 30 30 H 1.08006 * 125.79199 * 180.02562 * 11 10 9 31 31 H 1.08005 * 125.79317 * 180.24080 * 13 12 11 32 32 H 0.96996 * 120.00475 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2094 1.1142 0.0000 4 6 3.5044 0.9977 -0.0005 5 7 4.4041 2.0507 -0.0001 6 16 6.0322 1.7487 -0.0002 7 8 6.6754 3.0155 -0.0345 8 8 6.2622 0.7877 1.0210 9 6 6.4154 0.9548 -1.5259 10 6 6.7862 1.5871 -2.7349 11 6 6.9869 0.6118 -3.6391 12 8 6.7581 -0.5710 -3.0454 13 6 6.4158 -0.3693 -1.7626 14 16 3.9342 -0.7104 -0.0003 15 6 2.2246 -1.1384 -0.0005 16 16 1.5685 -2.7736 0.0060 17 6 3.0651 -3.7038 0.0009 18 1 4.0174 -3.1944 -0.0042 19 6 3.0201 -5.0868 0.0034 20 7 1.8575 -5.7087 0.0092 21 14 4.6067 -6.0728 -0.0012 22 1 5.7661 -5.1450 -0.0081 23 1 4.6624 -6.9266 1.2126 24 1 4.6527 -6.9308 -1.2124 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 4.0804 2.9651 0.0010 29 1 6.8880 2.6495 -2.9007 30 1 7.2821 0.7554 -4.6681 31 1 6.1790 -1.1396 -1.0434 32 1 1.8260 -6.6781 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350101037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:06 Heat of formation + Delta-G solvation = -14.388814 kcal Electronic energy + Delta-G solvation = -23197.083809 eV Core-core repulsion = 19504.823215 eV Total energy + Delta-G solvation = -3692.260594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 345.995 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.88359 -38.99619 -37.42924 -36.08086 -35.21060 -33.47221 -32.96276 -30.38944 -29.98335 -27.28863 -25.92650 -23.52348 -22.98089 -22.02440 -20.57518 -19.53730 -18.94013 -18.28009 -17.81234 -17.05107 -16.27086 -16.10638 -16.01623 -15.31950 -15.24955 -14.80928 -14.49677 -14.38924 -13.47594 -13.21472 -13.01835 -13.00775 -12.64543 -12.43896 -12.28894 -12.21901 -11.99267 -11.56430 -11.52494 -11.40084 -11.20233 -11.04545 -10.86900 -10.69080 -10.39315 -9.76418 -9.31300 -9.16612 -8.96304 -8.89672 -8.07795 -6.74069 -6.68748 -4.43495 0.08280 1.18069 1.28863 1.42244 1.92628 2.07101 2.73302 2.84947 2.93428 2.99149 3.08400 3.18549 3.33000 3.56743 3.83589 3.99154 4.56482 4.68787 4.69326 4.87187 4.98500 5.09980 5.40041 5.49033 5.70732 5.83960 6.02959 6.13572 6.17518 6.33371 6.58767 6.61614 6.96723 7.17468 7.87662 8.30695 8.73972 10.31661 Molecular weight = 345.99amu Principal moments of inertia in cm(-1) A = 0.011464 B = 0.005046 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.816919 B = 5547.898484 C = 6990.721812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.020 3.980 3 N -0.460 5.460 4 C 0.225 3.775 5 N -1.002 6.002 6 S 2.715 3.285 7 O -0.942 6.942 8 O -0.931 6.931 9 C -0.776 4.776 10 C -0.135 4.135 11 C -0.045 4.045 12 O -0.160 6.160 13 C 0.129 3.871 14 S 0.092 5.908 15 C -0.210 4.210 16 S 0.163 5.837 17 C -0.560 4.560 18 H 0.089 0.911 19 C 0.083 3.917 20 N -0.859 5.859 21 Si 0.924 3.076 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.431 0.569 29 H 0.164 0.836 30 H 0.212 0.788 31 H 0.221 0.779 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 10.931 -5.267 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 N -0.180 5.180 4 C -0.150 4.150 5 N -0.757 5.757 6 S 2.802 3.198 7 O -0.932 6.932 8 O -0.921 6.921 9 C -0.864 4.864 10 C -0.155 4.155 11 C -0.112 4.112 12 O -0.052 6.052 13 C 0.054 3.946 14 S 0.334 5.666 15 C -0.446 4.446 16 S 0.416 5.584 17 C -0.709 4.709 18 H 0.107 0.893 19 C -0.129 4.129 20 N -0.491 5.491 21 Si 0.749 3.251 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.269 0.731 29 H 0.181 0.819 30 H 0.229 0.771 31 H 0.238 0.762 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.201 9.869 -4.779 12.598 hybrid contribution 1.042 0.230 -0.620 1.234 sum 7.243 10.099 -5.399 13.550 Atomic orbital electron populations 1.20151 0.87450 1.02413 1.02162 1.19176 0.97072 0.84343 1.11738 1.65929 1.02611 1.31788 1.17674 1.23285 0.90485 0.90627 1.10617 1.52679 1.23319 1.13183 1.86532 1.01429 0.70964 0.73869 0.73505 1.93611 1.71430 1.40915 1.87281 1.93677 1.82778 1.62584 1.53028 1.31866 1.26353 1.05004 1.23203 1.21347 1.03070 1.01072 0.90015 1.24270 1.05897 0.81309 0.99724 1.84157 1.64790 1.33932 1.22299 1.24357 0.90318 0.96211 0.83713 1.84859 1.08207 0.97335 1.76191 1.28297 0.96287 1.07148 1.12877 1.83183 1.10755 0.83717 1.80792 1.23279 0.93381 0.94097 1.60142 0.89292 1.25035 0.98401 0.96673 0.92742 1.70016 1.24375 1.10516 1.44232 0.85986 0.81032 0.79561 0.78537 1.18755 1.19799 1.19912 0.91498 0.91586 0.90845 0.73085 0.81875 0.77115 0.76237 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.02 36.01 0.36 -0.65 16 2 C 0.02 0.39 6.73 -83.94 -0.57 -0.18 16 3 N -0.46 -8.77 10.56 -9.86 -0.10 -8.88 16 4 C 0.23 4.05 8.28 -87.52 -0.72 3.33 16 5 N -1.00 -14.45 5.85 30.82 0.18 -14.27 16 6 S 2.72 39.22 5.49 -107.50 -0.59 38.63 16 7 O -0.94 -14.22 17.90 -57.17 -1.02 -15.24 16 8 O -0.93 -15.84 16.27 -57.17 -0.93 -16.77 16 9 C -0.78 -10.57 5.93 -39.70 -0.24 -10.81 16 10 C -0.14 -1.54 10.75 -39.71 -0.43 -1.96 16 11 C -0.04 -0.46 12.09 29.41 0.36 -0.10 16 12 O -0.16 -2.08 10.65 5.71 0.06 -2.02 16 13 C 0.13 1.81 10.37 29.42 0.30 2.11 16 14 S 0.09 1.79 15.84 -107.50 -1.70 0.09 16 15 C -0.21 -4.47 6.67 29.43 0.20 -4.27 16 16 S 0.16 3.82 20.74 -107.50 -2.23 1.59 16 17 C -0.56 -14.14 9.26 30.78 0.29 -13.85 16 18 H 0.09 2.17 5.97 -52.49 -0.31 1.85 16 19 C 0.08 2.09 5.49 -17.49 -0.10 1.99 16 20 N -0.86 -22.42 13.22 55.47 0.73 -21.69 16 21 Si 0.92 19.35 29.55 -169.99 -5.02 14.33 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.17 7.38 -51.93 -0.38 0.79 16 28 H 0.43 5.01 8.95 -34.47 -0.31 4.70 16 29 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.21 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.22 3.08 6.47 -52.48 -0.34 2.74 16 32 H 0.28 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -31.31 322.46 -8.48 -39.79 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -2.17 Total: 3.98 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -0.55 Total: -24.39 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.81 Total: -44.83 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.89 Total: -34.03 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -4.52 Total: 40.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.31 -8.48 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350101037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.401 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds