Wall clock time and date at job start Wed Apr 1 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38309 * 119.92528 * 2 1 4 4 C 1.38169 * 120.06634 * 179.72545 * 3 2 1 5 5 Cl 1.73595 * 120.03481 * 180.27479 * 4 3 2 6 6 C 1.39038 * 119.92620 * 0.54574 * 4 3 2 7 7 N 1.39750 * 120.07235 * 179.74873 * 6 4 3 8 8 C 1.46496 * 119.99838 * 179.72731 * 7 6 4 9 9 C 1.50706 * 109.47106 * 179.97438 * 8 7 6 10 10 O 1.21295 * 119.99584 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99943 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00099 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00243 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46883 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00270 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00343 * 16 14 12 20 20 C 1.38830 * 119.85329 * 359.47807 * 6 4 3 21 21 C 1.38240 * 119.92859 * 0.25015 * 20 6 4 22 22 Br 1.89099 * 119.96097 * 179.97438 * 21 20 6 23 23 H 1.08997 * 109.46874 * 269.97870 * 1 2 3 24 24 H 1.09000 * 109.46747 * 29.97920 * 1 2 3 25 25 H 1.08999 * 109.46940 * 149.97740 * 1 2 3 26 26 H 1.07995 * 119.96486 * 0.02562 * 3 2 1 27 27 H 0.96998 * 119.99970 * 359.72502 * 7 6 4 28 28 H 1.09001 * 109.47001 * 60.00164 * 8 7 6 29 29 H 1.09000 * 109.47574 * 300.00380 * 8 7 6 30 30 H 0.96994 * 119.99756 * 0.02562 * 11 9 8 31 31 H 0.96999 * 120.00288 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.03246 * 180.26628 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5787 1.2021 0.0057 5 17 4.4439 2.7071 0.0129 6 6 4.2754 -0.0011 0.0000 7 7 5.6729 -0.0012 0.0005 8 6 6.4052 -1.2700 0.0005 9 6 7.8870 -0.9947 0.0004 10 8 8.2913 0.1488 0.0008 11 7 8.7627 -2.0192 0.0009 12 6 10.1105 -1.7687 0.0014 13 1 10.4706 -0.7505 0.0017 14 6 11.0134 -2.8249 0.0025 15 7 10.5753 -4.0639 0.0025 16 14 12.8500 -2.4837 0.0023 17 1 13.0809 -1.0167 0.0016 18 1 13.4644 -3.0805 1.2154 19 1 13.4647 -3.0826 -1.2096 20 6 3.5796 -1.2025 -0.0005 21 6 2.1972 -1.1989 -0.0005 22 35 1.2486 -2.8348 -0.0019 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6553 2.1329 0.0004 27 1 6.1579 0.8388 0.0008 28 1 6.1422 -1.8414 -0.8897 29 1 6.1416 -1.8418 0.8902 30 1 8.4392 -2.9336 0.0010 31 1 11.2056 -4.8012 0.0029 32 1 4.1178 -2.1389 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417046021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:37 Heat of formation + Delta-G solvation = -23.091139 kcal Electronic energy + Delta-G solvation = -18979.510278 eV Core-core repulsion = 15625.604354 eV Total energy + Delta-G solvation = -3353.905925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 345.982 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89272 -38.43278 -36.52489 -35.70561 -34.08928 -32.25835 -31.63370 -31.34332 -29.38431 -28.00804 -25.54880 -24.32088 -22.69904 -21.15535 -19.53733 -18.17823 -17.63902 -16.51247 -15.69930 -15.48955 -15.04049 -14.79234 -14.34748 -14.24219 -14.05079 -13.84332 -13.57740 -13.13091 -12.56343 -12.31292 -12.26280 -12.09038 -11.84639 -11.66447 -11.38193 -11.19605 -10.89385 -10.76418 -10.44173 -10.36015 -10.26129 -9.87289 -9.68582 -8.79957 -8.69460 -8.15443 -7.37983 -6.56480 -3.98337 0.88072 1.30139 1.46748 2.15813 3.07007 3.19769 3.25792 3.41383 3.42268 3.67317 4.08081 4.55357 4.73738 4.81598 5.03749 5.11126 5.13257 5.41135 5.47777 5.50692 5.58671 5.74305 5.76436 5.81846 5.96633 6.01977 6.20479 6.45709 7.17170 7.42085 7.80652 7.90626 8.39811 9.00260 9.33185 9.81256 10.60420 Molecular weight = 345.98amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.002976 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.243128 B = 9404.772042 C =11328.562014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.054 4.054 4 C -0.103 4.103 5 Cl -0.063 7.063 6 C 0.241 3.759 7 N -0.712 5.712 8 C 0.107 3.893 9 C 0.428 3.572 10 O -0.592 6.592 11 N -0.548 5.548 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.166 4.166 21 C -0.034 4.034 22 Br -0.048 7.048 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.418 0.582 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.395 0.605 31 H 0.274 0.726 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.885 3.052 -0.003 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.136 4.136 5 Cl -0.034 7.034 6 C 0.131 3.869 7 N -0.342 5.342 8 C -0.021 4.021 9 C 0.213 3.787 10 O -0.478 6.478 11 N -0.183 5.183 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.191 4.191 21 C -0.114 4.114 22 Br 0.038 6.962 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.259 0.741 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.599 2.950 -0.004 21.799 hybrid contribution 1.322 0.218 0.011 1.340 sum -20.277 3.167 0.007 20.522 Atomic orbital electron populations 1.20822 0.90145 1.03251 1.02649 1.19350 0.96431 0.90655 1.06141 1.20591 0.90964 0.98003 0.97825 1.20418 0.92461 0.85892 1.14780 1.98366 1.76749 1.31056 1.97248 1.17425 0.84455 0.91718 0.93272 1.44710 1.01289 1.09869 1.78341 1.21067 0.92350 0.86320 1.02358 1.19637 0.86809 0.86361 0.85873 1.90525 1.79036 1.21290 1.56962 1.41784 1.06248 1.07602 1.62707 1.19783 0.80311 0.95152 1.48152 0.87621 1.25318 1.01030 0.94578 0.96718 1.69612 1.36095 0.98391 1.49381 0.85762 0.81571 0.78938 0.77867 1.19103 1.20570 1.20563 1.20512 0.92123 0.97145 1.09295 1.21432 0.93871 0.91113 1.05029 1.96671 1.75138 1.26911 1.97473 0.91068 0.91407 0.90844 0.84431 0.74110 0.90178 0.90170 0.77108 0.91609 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.55 36.01 0.34 -0.57 16 2 C -0.12 -1.31 5.88 -104.56 -0.62 -1.93 16 3 C -0.05 -0.60 9.47 -39.58 -0.37 -0.97 16 4 C -0.10 -1.38 6.34 -39.31 -0.25 -1.63 16 5 Cl -0.06 -0.85 27.59 -51.86 -1.43 -2.28 16 6 C 0.24 3.49 6.65 -83.73 -0.56 2.93 16 7 N -0.71 -11.78 5.66 -59.77 -0.34 -12.12 16 8 C 0.11 1.81 5.39 -5.19 -0.03 1.78 16 9 C 0.43 9.62 7.85 -10.98 -0.09 9.53 16 10 O -0.59 -15.35 15.24 5.54 0.08 -15.26 16 11 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 12 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 13 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.42 13.05 55.50 0.72 -22.69 16 16 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.17 -2.17 9.05 -39.36 -0.36 -2.52 16 21 C -0.03 -0.40 6.22 -39.54 -0.25 -0.65 16 22 Br -0.05 -0.50 31.77 -68.01 -2.16 -2.66 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.04 16 25 H 0.07 0.59 6.63 -51.93 -0.34 0.25 16 26 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.42 7.60 6.11 -40.82 -0.25 7.35 16 28 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 29 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 30 H 0.40 9.02 7.90 -40.82 -0.32 8.70 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.14 1.75 6.73 -52.49 -0.35 1.39 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -28.68 314.09 -8.75 -37.43 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -2.87 Total: 12.56 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.41 Total: -1.75 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.33 Total: -48.11 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.43 Total: -2.28 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.16 Total: -2.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.68 -8.75 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417046021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.338 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds