Wall clock time and date at job start Wed Apr 1 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70616 * 124.52059 * 2 1 4 4 C 1.75823 * 91.57573 * 180.02562 * 3 2 1 5 5 C 1.46577 * 125.45578 * 179.97438 * 4 3 2 6 6 O 1.21703 * 120.00224 * 179.69412 * 5 4 3 7 7 N 1.34777 * 119.99582 * 359.69081 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72448 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 O 1.21293 * 120.00086 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00069 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00084 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00027 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99944 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99680 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47135 * 90.00298 * 16 14 12 18 18 H 1.48500 * 109.46751 * 210.00274 * 16 14 12 19 19 H 1.48499 * 109.47283 * 330.00462 * 16 14 12 20 20 C 1.36664 * 109.09239 * 359.69673 * 4 3 2 21 21 C 1.33860 * 124.52444 * 179.73339 * 2 1 3 22 22 Br 1.89101 * 122.45699 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.46855 * 270.26781 * 1 2 3 24 24 H 1.09002 * 109.47585 * 30.26399 * 1 2 3 25 25 H 1.09000 * 109.47144 * 150.26921 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 28 28 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 29 29 H 0.97002 * 120.00050 * 359.97438 * 11 9 8 30 30 H 0.96997 * 119.99888 * 179.97438 * 15 14 12 31 31 H 1.08000 * 123.35327 * 180.22815 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4738 1.4057 0.0000 4 6 3.9493 0.4496 -0.0008 5 6 5.3122 0.9891 -0.0017 6 8 6.2660 0.2332 0.0035 7 7 5.5090 2.3224 -0.0083 8 6 6.8711 2.8618 -0.0031 9 6 6.8151 4.3678 -0.0052 10 8 5.7428 4.9348 -0.0111 11 7 7.9564 5.0846 -0.0018 12 6 7.9054 6.4546 -0.0043 13 1 6.9507 6.9595 -0.0095 14 6 9.0822 7.1936 -0.0001 15 7 10.2438 6.5793 0.0057 16 14 9.0127 9.0604 -0.0043 17 1 8.9876 9.5579 1.3947 18 1 10.2092 9.5986 -0.6997 19 1 7.7859 9.5085 -0.7110 20 6 3.6221 -0.8773 0.0058 21 6 2.2656 -1.1028 0.0051 22 35 1.5262 -2.8433 0.0125 23 1 -0.3633 0.0048 1.0277 24 1 -0.3634 0.8876 -0.5179 25 1 -0.3633 -0.8924 -0.5096 26 1 4.7488 2.9250 -0.0120 27 1 7.3943 2.5190 0.8897 28 1 7.4020 2.5167 -0.8903 29 1 8.8139 4.6311 0.0025 30 1 11.0652 7.0953 0.0082 31 1 4.3559 -1.6698 0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424848909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:25 Heat of formation + Delta-G solvation = -46.132126 kcal Electronic energy + Delta-G solvation = -18672.294126 eV Core-core repulsion = 15319.432776 eV Total energy + Delta-G solvation = -3352.861351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 345.977 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.81767 -38.50913 -37.87570 -34.55898 -33.77541 -32.59566 -31.43242 -31.08079 -28.61067 -26.56396 -24.65029 -23.69697 -21.20238 -19.90396 -19.18008 -18.25788 -18.03045 -16.64203 -15.91108 -15.50319 -15.28528 -15.02513 -14.69469 -14.41947 -14.03792 -13.87936 -13.62183 -13.36623 -12.79997 -12.63976 -12.29740 -12.21825 -12.01711 -11.67047 -11.26646 -11.15891 -11.00743 -10.53098 -10.48956 -10.36156 -10.09408 -9.68070 -9.10866 -8.90468 -8.72994 -8.70145 -8.14953 -6.55571 -3.97761 0.15441 0.80332 1.27339 1.83928 1.91077 3.08473 3.14544 3.14650 3.20566 3.26688 3.68251 4.07446 4.32563 4.65046 4.79080 4.82673 5.10411 5.12834 5.20683 5.30538 5.54080 5.58895 5.82406 5.84556 5.87252 5.99203 6.47615 7.42248 7.57929 7.86812 8.19850 8.40024 9.00051 9.33938 9.81376 10.61187 Molecular weight = 345.98amu Principal moments of inertia in cm(-1) A = 0.038203 B = 0.002116 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.743213 B =13232.046563 C =13944.320184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.176 4.176 3 S 0.263 5.737 4 C -0.257 4.257 5 C 0.588 3.412 6 O -0.532 6.532 7 N -0.701 5.701 8 C 0.109 3.891 9 C 0.426 3.574 10 O -0.598 6.598 11 N -0.546 5.546 12 C -0.306 4.306 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.893 5.893 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.037 4.037 21 C -0.126 4.126 22 Br -0.027 7.027 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.408 0.592 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.396 0.604 30 H 0.275 0.725 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.442 -17.095 0.032 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.299 4.299 3 S 0.531 5.469 4 C -0.378 4.378 5 C 0.373 3.627 6 O -0.411 6.411 7 N -0.355 5.355 8 C -0.018 4.018 9 C 0.212 3.788 10 O -0.484 6.484 11 N -0.181 5.181 12 C -0.435 4.435 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.070 4.070 21 C -0.218 4.218 22 Br 0.057 6.943 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.247 0.753 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.806 -16.196 0.025 24.819 hybrid contribution 0.777 -0.285 0.019 0.828 sum -18.029 -16.481 0.044 24.427 Atomic orbital electron populations 1.20564 0.86474 1.04275 1.03843 1.24302 1.02399 0.97349 1.05844 1.83467 0.93018 1.04808 1.65652 1.24567 0.97627 0.97659 1.17987 1.16774 0.86489 0.82274 0.77145 1.90833 1.41484 1.58132 1.50678 1.45562 1.10087 1.05956 1.73896 1.21027 0.83278 0.93818 1.03701 1.19675 0.85482 0.87731 0.85935 1.90497 1.28947 1.71461 1.57538 1.41787 1.06788 1.07178 1.62338 1.19736 0.94806 0.80611 1.48372 0.87608 1.25342 0.94552 1.01113 0.96676 1.69611 0.97662 1.37002 1.49062 0.85803 0.78010 0.81627 0.78532 1.20224 1.20765 1.19280 1.20490 0.94180 0.95856 0.96445 1.20411 0.94440 0.92091 1.14885 1.96670 1.83942 1.15814 1.97920 0.89593 0.90317 0.89587 0.75348 0.89379 0.89365 0.76973 0.91517 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.96 36.00 0.36 -0.26 16 2 C -0.18 -1.68 6.28 -35.85 -0.23 -1.91 16 3 S 0.26 2.78 22.10 -107.50 -2.38 0.40 16 4 C -0.26 -3.43 6.45 -36.79 -0.24 -3.67 16 5 C 0.59 9.59 7.78 -12.90 -0.10 9.49 16 6 O -0.53 -10.04 16.84 5.19 0.09 -9.95 16 7 N -0.70 -11.80 5.52 -62.83 -0.35 -12.15 16 8 C 0.11 1.98 6.15 -5.19 -0.03 1.94 16 9 C 0.43 9.59 7.85 -10.98 -0.09 9.50 16 10 O -0.60 -14.97 15.24 5.55 0.08 -14.89 16 11 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 12 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 13 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -23.54 13.05 55.50 0.72 -22.82 16 16 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 C -0.04 -0.45 9.86 -40.41 -0.40 -0.85 16 21 C -0.13 -1.34 6.15 -41.38 -0.25 -1.59 16 22 Br -0.03 -0.25 32.62 -68.01 -2.22 -2.47 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.54 7.24 -51.93 -0.38 0.16 16 26 H 0.41 6.74 6.55 -40.82 -0.27 6.47 16 27 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -30.29 314.98 -8.19 -38.48 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -2.59 Total: 11.87 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.22 Total: 4.93 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.32 Total: -48.32 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.17 Total: -24.84 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.38 Total: 0.40 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.22 Total: -2.47 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.29 -8.19 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424848909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.654 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds