Wall clock time and date at job start Wed Apr 1 2020 03:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46951 * 111.00310 * 2 1 4 4 C 1.53053 * 109.36642 * 176.81155 * 3 2 1 5 5 N 1.46959 * 109.36022 * 58.40131 * 4 3 2 6 6 C 1.38408 * 110.99318 * 176.81227 * 5 4 3 7 7 N 1.32503 * 119.21543 * 123.53512 * 6 5 4 8 8 C 1.32276 * 120.73622 * 179.71405 * 7 6 5 9 9 C 1.38597 * 119.19946 * 0.54280 * 8 7 6 10 10 C 1.50705 * 120.72062 * 179.70965 * 9 8 7 11 11 N 1.46907 * 109.46802 * 270.01906 * 10 9 8 12 12 C 1.46844 * 111.00125 * 294.20840 * 11 10 9 13 13 C 1.53034 * 109.51905 * 174.15939 * 12 11 10 14 14 C 1.53125 * 109.27883 * 59.18377 * 13 12 11 15 15 C 1.50702 * 109.57456 * 182.40703 * 14 13 12 16 16 H 1.07992 * 120.00160 * 119.71347 * 15 14 13 17 17 C 1.37879 * 119.99765 * 299.71215 * 15 14 13 18 18 N 1.31509 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47177 * 90.00232 * 19 17 15 21 21 H 1.48505 * 109.47073 * 210.00006 * 19 17 15 22 22 H 1.48498 * 109.47385 * 329.99752 * 19 17 15 23 23 C 1.53116 * 109.15970 * 302.34194 * 14 13 12 24 24 C 1.46844 * 110.99552 * 169.99842 * 11 10 9 25 25 C 1.38606 * 118.56013 * 359.73095 * 9 8 7 26 26 N 1.32272 * 119.19678 * 359.97438 * 25 9 8 27 27 C 1.46951 * 110.88151 * 300.67977 * 5 4 3 28 28 C 1.46963 * 110.99998 * 236.19794 * 2 1 3 29 29 H 1.09002 * 109.47401 * 183.79797 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.79809 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.79943 * 1 2 3 32 32 H 1.09004 * 109.49193 * 296.78028 * 3 2 1 33 33 H 1.09005 * 109.48825 * 56.84650 * 3 2 1 34 34 H 1.09000 * 109.48834 * 298.43690 * 4 3 2 35 35 H 1.08995 * 109.50561 * 178.37984 * 4 3 2 36 36 H 1.07996 * 120.39716 * 180.24736 * 8 7 6 37 37 H 1.08999 * 109.47079 * 30.01901 * 10 9 8 38 38 H 1.08998 * 109.46836 * 150.02410 * 10 9 8 39 39 H 1.08998 * 109.46311 * 294.17846 * 12 11 10 40 40 H 1.08998 * 109.46047 * 54.14815 * 12 11 10 41 41 H 1.08995 * 109.50876 * 299.23726 * 13 12 11 42 42 H 1.09005 * 109.50304 * 179.11866 * 13 12 11 43 43 H 1.08994 * 109.51932 * 62.24600 * 14 13 12 44 44 H 0.97001 * 120.00218 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.50448 * 297.71451 * 23 14 13 46 46 H 1.09002 * 109.50372 * 177.59519 * 23 14 13 47 47 H 1.08997 * 109.46793 * 305.85634 * 24 11 10 48 48 H 1.08995 * 109.46255 * 65.83780 * 24 11 10 49 49 H 1.08007 * 120.40275 * 180.02562 * 25 9 8 50 50 H 1.08999 * 109.48713 * 299.35518 * 27 5 4 51 51 H 1.09000 * 109.50460 * 179.30475 * 27 5 4 52 52 H 1.08993 * 109.48837 * 303.16159 * 28 2 1 53 53 H 1.09009 * 109.48580 * 63.22308 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5657 -1.0598 6 6 5.4342 0.5657 -1.0598 7 7 6.0809 -0.5907 -1.0544 8 6 7.4032 -0.6259 -1.0599 9 6 8.1112 0.5656 -1.0598 10 6 9.6183 0.5655 -1.0594 11 7 10.1075 0.5653 0.3258 12 6 9.7527 1.8155 1.0095 13 6 10.1479 1.7214 2.4849 14 6 11.6548 1.4704 2.5897 15 6 12.0416 1.3177 4.0382 16 1 12.4923 0.3988 4.3828 17 6 11.8203 2.3513 4.9235 18 7 11.2711 3.4702 4.5040 19 14 12.3005 2.1624 6.7188 20 1 13.6975 2.6286 6.9092 21 1 11.3881 2.9745 7.5634 22 1 12.1976 0.7338 7.1110 23 6 12.0048 0.1887 1.8288 24 6 11.5557 0.3271 0.3723 25 6 7.4032 1.7572 -1.0598 26 7 6.0810 1.7220 -1.0603 27 6 3.5234 -0.8062 -1.0598 28 6 1.9957 -0.7633 -1.1401 29 1 -0.3634 -1.0254 0.0681 30 1 -0.3633 0.4538 -0.9221 31 1 -0.3633 0.5717 0.8540 32 1 1.6938 1.8774 -0.9173 33 1 1.6014 1.9128 0.8603 34 1 3.8254 0.8478 1.0106 35 1 3.9182 2.3446 0.0515 36 1 7.9247 -1.5716 -1.0595 37 1 9.9817 -0.3244 -1.5733 38 1 9.9817 1.4556 -1.5729 39 1 10.2821 2.6468 0.5440 40 1 8.6781 1.9799 0.9311 41 1 9.6084 0.8989 2.9545 42 1 9.8987 2.6554 2.9887 43 1 12.1951 2.3112 2.1550 44 1 11.1157 4.1975 5.1267 45 1 11.4946 -0.6581 2.2879 46 1 13.0823 0.0275 1.8637 47 1 11.7907 -0.5894 -0.1688 48 1 12.0767 1.1655 -0.0900 49 1 7.9249 2.7029 -1.0602 50 1 3.8253 -1.3116 -0.1425 51 1 3.9177 -1.3474 -1.9199 52 1 1.6013 -1.7789 -1.1110 53 1 1.6938 -0.2821 -2.0705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543779578.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:31 Heat of formation + Delta-G solvation = 77.718428 kcal Electronic energy + Delta-G solvation = -30644.596000 eV Core-core repulsion = 26744.556668 eV Total energy + Delta-G solvation = -3900.039332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.222 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37353 -39.41376 -38.22714 -35.96776 -34.23551 -33.77720 -32.26108 -31.27211 -30.55969 -29.84294 -28.62483 -26.41464 -25.11971 -24.80979 -23.80091 -23.41720 -22.25751 -21.99677 -21.01990 -20.20811 -18.64680 -18.07269 -17.60613 -16.42393 -15.85565 -15.61331 -15.41105 -15.23028 -15.20620 -14.88752 -14.69404 -14.45685 -14.34921 -14.09457 -13.69450 -13.45681 -13.12608 -12.95490 -12.84177 -12.54604 -12.42675 -12.29135 -12.12009 -11.76204 -11.62792 -11.50463 -11.32108 -11.26275 -11.02229 -10.91786 -10.77367 -10.70760 -10.43970 -10.26269 -10.08990 -9.98435 -9.45549 -9.14079 -8.98593 -8.73181 -8.72118 -8.42275 -8.29891 -7.83119 -5.97659 -4.02807 0.93040 1.14575 2.99725 3.31128 3.38108 3.41600 3.55751 3.72294 4.10816 4.42835 4.45278 4.49916 4.64893 4.66794 4.72949 4.83280 4.84893 4.96215 5.02015 5.04708 5.19298 5.20698 5.25951 5.32757 5.48147 5.51585 5.55724 5.57310 5.64329 5.66933 5.69853 5.78098 5.84543 5.92235 6.06926 6.14262 6.16811 6.26819 6.39996 6.55951 6.59749 6.60023 6.68113 6.73214 6.82423 7.04709 7.11602 7.16864 7.39949 7.56478 7.61916 7.80642 8.03349 8.12451 8.14200 8.47769 9.00819 9.61692 11.08573 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.002383 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.510565 B =11746.836934 C =13165.298610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.068 3.932 5 N -0.463 5.463 6 C 0.483 3.517 7 N -0.551 5.551 8 C 0.190 3.810 9 C -0.200 4.200 10 C 0.103 3.897 11 N -0.532 5.532 12 C 0.055 3.945 13 C -0.103 4.103 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.107 4.107 24 C 0.062 3.938 25 C 0.181 3.819 26 N -0.529 5.529 27 C 0.073 3.927 28 C 0.054 3.946 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.024 0.976 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.020 0.980 44 H 0.259 0.741 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.166 0.834 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.610 -6.231 -14.643 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.058 4.058 5 N -0.184 5.184 6 C 0.127 3.873 7 N -0.270 5.270 8 C 0.023 3.977 9 C -0.206 4.206 10 C -0.026 4.026 11 N -0.257 5.257 12 C -0.072 4.072 13 C -0.141 4.141 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.144 4.144 24 C -0.066 4.066 25 C 0.013 3.987 26 N -0.246 5.246 27 C -0.055 4.055 28 C -0.074 4.074 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.185 0.815 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.184 0.816 50 H 0.081 0.919 51 H 0.110 0.890 52 H 0.104 0.896 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.982 -6.430 -14.302 23.859 hybrid contribution 1.527 0.748 0.402 1.747 sum -16.455 -5.683 -13.900 22.277 Atomic orbital electron populations 1.22346 0.86849 1.02388 1.00642 1.62178 1.08124 1.13961 1.42970 1.22213 0.93736 0.89459 1.01707 1.22274 0.94295 0.99360 0.89892 1.58635 1.01447 1.16471 1.41828 1.20910 0.90608 0.84759 0.91003 1.68342 1.10688 1.29193 1.18778 1.22898 0.88278 0.98399 0.88144 1.21411 0.98507 0.95248 1.05408 1.20808 0.88777 1.01473 0.91535 1.62060 1.14608 1.36843 1.12201 1.22338 0.98565 0.88242 0.98042 1.21650 0.99016 1.03007 0.90446 1.18681 0.92229 0.91582 0.94553 1.21202 1.39768 1.00280 0.93595 0.92755 1.24968 0.95180 0.95320 0.98564 1.69866 1.43806 1.04689 1.34763 0.86641 0.78272 0.78070 0.85294 1.20788 1.21296 1.19961 1.21684 0.98922 1.01296 0.92540 1.22127 0.86274 0.98867 0.99318 1.23015 0.88428 0.98469 0.88805 1.67974 1.10086 1.28806 1.17767 1.22085 0.93101 0.86731 1.03544 1.22269 0.94298 0.98934 0.91898 0.91204 0.95524 0.91197 0.93562 0.89441 0.92743 0.88221 0.81499 0.90007 0.94032 0.95730 0.92898 0.93994 0.88965 0.96139 0.93098 0.92475 0.93064 0.92251 0.95602 0.81649 0.91884 0.89034 0.89582 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.60 60.07 0.58 0.75 16 2 N -0.55 -4.99 4.97 -242.75 -1.21 -6.19 16 3 C 0.06 0.52 5.62 -3.77 -0.02 0.50 16 4 C 0.07 0.78 5.46 -3.76 -0.02 0.76 16 5 N -0.46 -5.82 4.77 -175.24 -0.84 -6.65 16 6 C 0.48 6.95 7.17 -322.79 -2.31 4.63 16 7 N -0.55 -7.72 8.70 -13.93 -0.12 -7.84 16 8 C 0.19 2.44 11.00 -17.23 -0.19 2.25 16 9 C -0.20 -2.61 4.90 -104.35 -0.51 -3.13 16 10 C 0.10 1.32 5.16 -4.97 -0.03 1.29 16 11 N -0.53 -8.79 4.65 -236.12 -1.10 -9.89 16 12 C 0.06 1.04 5.19 -3.84 -0.02 1.02 16 13 C -0.10 -2.40 5.12 -26.65 -0.14 -2.54 16 14 C 0.05 1.17 2.16 -91.65 -0.20 0.98 16 15 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 18 N -0.89 -25.32 11.37 55.43 0.63 -24.69 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.11 -2.16 5.32 -26.65 -0.14 -2.31 16 24 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 25 C 0.18 2.46 9.21 -17.23 -0.16 2.30 16 26 N -0.53 -7.81 9.72 -13.93 -0.14 -7.94 16 27 C 0.07 0.79 4.76 -3.78 -0.02 0.77 16 28 C 0.05 0.47 5.62 -3.77 -0.02 0.45 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.18 7.64 -51.93 -0.40 0.78 16 36 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 38 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.95 5.78 -51.93 -0.30 0.65 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 2.42 6.17 -51.93 -0.32 2.09 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.17 1.99 7.99 -52.48 -0.42 1.57 16 50 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 51 H 0.09 0.98 7.81 -51.93 -0.41 0.57 16 52 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 53 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -30.19 406.20 -14.67 -44.85 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -9.39 Total: -0.19 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -3.61 Total: -3.89 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -2.77 Total: -63.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.19 -14.67 -44.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543779578.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.572 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds