Wall clock time and date at job start Wed Apr 1 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21300 * 120.00112 * 2 1 4 4 C 1.46785 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.40070 * 120.20873 * 359.97438 * 4 2 1 6 6 C 1.37728 * 119.91176 * 180.02562 * 5 4 2 7 7 Br 1.89101 * 119.83042 * 179.97438 * 6 5 4 8 8 C 1.38712 * 120.33784 * 359.97438 * 6 5 4 9 9 C 1.38197 * 120.42492 * 359.74892 * 8 6 5 10 10 F 1.35101 * 119.96433 * 180.25898 * 9 8 6 11 11 C 1.38904 * 120.07620 * 0.50985 * 9 8 6 12 12 O 1.35668 * 120.16982 * 179.77420 * 11 9 8 13 13 C 1.42903 * 116.99434 * 269.72240 * 12 11 9 14 14 C 1.53000 * 109.46726 * 179.97438 * 13 12 11 15 15 H 1.08990 * 109.47170 * 54.99820 * 14 13 12 16 16 O 1.42905 * 109.46848 * 294.99599 * 14 13 12 17 17 C 1.50700 * 109.46738 * 175.00035 * 14 13 12 18 18 H 1.07994 * 120.00251 * 359.97438 * 17 14 13 19 19 C 1.37882 * 119.99770 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99961 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99950 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46875 * 60.00323 * 21 19 17 23 23 H 1.48500 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47344 * 300.00279 * 21 19 17 25 25 H 1.08995 * 109.47573 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47430 * 300.00480 * 1 2 3 27 27 H 1.09001 * 109.47097 * 60.00427 * 1 2 3 28 28 H 1.07996 * 120.04177 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.79027 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.47382 * 59.99726 * 13 12 11 31 31 H 1.09001 * 109.46938 * 299.99712 * 13 12 11 32 32 H 0.96702 * 113.99974 * 300.00156 * 16 14 13 33 33 H 0.97006 * 119.99857 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5449 -2.4868 0.0017 6 6 2.2397 -3.6760 0.0027 7 35 1.2978 -5.3157 0.0049 8 6 3.6268 -3.6770 0.0022 9 6 4.3275 -2.4859 -0.0046 10 9 5.6785 -2.4978 -0.0104 11 6 3.6445 -1.2764 -0.0003 12 8 4.3305 -0.1059 -0.0024 13 6 4.6591 0.4556 1.2700 14 6 5.4265 1.7636 1.0672 15 1 4.8435 2.4325 0.4344 16 8 6.6808 1.4876 0.4405 17 6 5.6659 2.4178 2.4036 18 1 5.3062 1.9479 3.3070 19 6 6.3441 3.6163 2.4728 20 7 6.7816 4.1887 1.3726 21 14 6.6401 4.4276 4.1292 22 1 7.4337 3.5159 4.9920 23 1 7.3851 5.6970 3.9325 24 1 5.3365 4.7149 4.7797 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.4650 -2.4915 0.0025 29 1 4.1627 -4.6147 0.0026 30 1 5.2790 -0.2463 1.8278 31 1 3.7434 0.6538 1.8270 32 1 7.2531 0.8968 0.9491 33 1 7.2591 5.0317 1.4213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575133113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:07 Heat of formation + Delta-G solvation = -135.152985 kcal Electronic energy + Delta-G solvation = -22244.639585 eV Core-core repulsion = 18425.245167 eV Total energy + Delta-G solvation = -3819.394417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 346.005 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.92918 -40.43481 -38.27345 -37.60107 -35.33112 -32.45499 -32.14257 -31.85378 -29.58197 -29.30271 -28.20988 -25.03041 -24.34814 -22.35443 -20.93838 -20.13350 -18.19054 -17.29546 -17.20120 -16.61318 -15.94052 -15.70174 -15.10480 -15.01877 -14.75897 -14.65454 -14.62205 -14.43864 -13.47545 -13.42476 -13.01580 -12.95686 -12.69806 -12.31872 -12.17607 -11.88115 -11.77643 -11.06613 -10.96965 -10.91013 -10.74477 -10.73019 -10.18393 -9.78719 -9.39063 -9.28189 -9.06222 -8.74200 -8.58954 -8.21504 -6.04028 -4.24449 0.21897 0.62125 1.14557 2.18031 3.11769 3.27925 3.32932 3.34439 3.63082 3.88674 4.09488 4.38304 4.47390 4.55936 4.88821 4.93688 5.12056 5.23106 5.29600 5.31379 5.49419 5.58038 5.65821 5.88588 5.96023 6.01969 6.18790 6.37631 6.63938 7.56694 7.63919 7.71821 7.90377 8.09208 8.77808 9.38115 9.53877 11.00579 Molecular weight = 346.00amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003043 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.603216 B = 9200.012999 C = 9823.638055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.380 3.620 3 O -0.407 6.407 4 C -0.167 4.167 5 C -0.046 4.046 6 C -0.097 4.097 7 Br -0.036 7.036 8 C -0.089 4.089 9 C 0.073 3.927 10 F -0.117 7.117 11 C 0.154 3.846 12 O -0.307 6.307 13 C 0.056 3.944 14 C 0.240 3.760 15 H 0.071 0.929 16 O -0.557 6.557 17 C -0.575 4.575 18 H 0.056 0.944 19 C 0.082 3.918 20 N -0.854 5.854 21 Si 0.896 3.104 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.344 0.656 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 -20.455 -2.686 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.254 3.746 3 O -0.278 6.278 4 C -0.170 4.170 5 C -0.066 4.066 6 C -0.176 4.176 7 Br 0.050 6.950 8 C -0.110 4.110 9 C 0.052 3.948 10 F -0.096 7.096 11 C 0.107 3.893 12 O -0.224 6.224 13 C -0.017 4.017 14 C 0.182 3.818 15 H 0.089 0.911 16 O -0.359 6.359 17 C -0.613 4.613 18 H 0.075 0.925 19 C -0.125 4.125 20 N -0.488 5.488 21 Si 0.722 3.278 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.187 0.813 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.985 -19.798 -3.388 25.060 hybrid contribution 0.730 0.107 1.526 1.695 sum -14.255 -19.691 -1.862 24.380 Atomic orbital electron populations 1.22217 0.93387 1.04393 1.05331 1.22166 0.91538 0.87181 0.73711 1.90763 1.71391 1.33173 1.32465 1.20962 0.92952 0.95995 1.07092 1.21394 1.00696 0.89249 0.95235 1.21303 0.93771 0.92416 1.10153 1.96750 1.74623 1.25856 1.97808 1.21161 0.92847 0.97979 0.98986 1.17943 0.78217 0.93230 1.05416 1.91578 1.27194 1.97127 1.93660 1.19359 0.89774 0.86996 0.93187 1.86159 1.72190 1.32020 1.32003 1.24136 0.99082 0.97813 0.80680 1.19426 0.81401 0.86812 0.94166 0.91113 1.86624 1.29952 1.69768 1.49570 1.21370 1.40116 1.07442 0.92375 0.92532 1.25005 0.94545 0.96399 0.96572 1.70087 1.34845 1.16974 1.26912 0.86632 0.78464 0.78780 0.83890 1.20039 1.21011 1.20038 0.90193 0.88528 0.88576 0.83039 0.83093 0.94043 0.92955 0.81306 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 10.19 36.01 0.37 -1.35 16 2 C 0.38 5.42 7.21 -30.86 -0.22 5.20 16 3 O -0.41 -7.97 14.76 -16.39 -0.24 -8.21 16 4 C -0.17 -2.31 5.88 -104.96 -0.62 -2.93 16 5 C -0.05 -0.46 9.17 -39.08 -0.36 -0.82 16 6 C -0.10 -0.98 6.21 -39.59 -0.25 -1.23 16 7 Br -0.04 -0.29 33.68 -68.01 -2.29 -2.58 16 8 C -0.09 -1.01 9.74 -39.42 -0.38 -1.39 16 9 C 0.07 1.09 7.30 -39.35 -0.29 0.80 16 10 F -0.12 -1.95 17.11 2.25 0.04 -1.91 16 11 C 0.15 2.63 5.75 -38.54 -0.22 2.40 16 12 O -0.31 -6.63 8.31 -44.57 -0.37 -7.00 16 13 C 0.06 1.26 4.99 37.16 0.19 1.44 16 14 C 0.24 6.50 3.11 -27.88 -0.09 6.41 16 15 H 0.07 2.16 8.14 -51.93 -0.42 1.74 16 16 O -0.56 -15.36 12.70 -40.09 -0.51 -15.87 16 17 C -0.58 -16.18 8.76 -34.44 -0.30 -16.48 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.08 2.33 5.40 -17.82 -0.10 2.24 16 20 N -0.85 -25.77 12.84 55.43 0.71 -25.06 16 21 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.08 0.46 5.60 -51.93 -0.29 0.17 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.15 1.03 5.92 -52.49 -0.31 0.72 16 29 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 1.15 7.50 -51.93 -0.39 0.77 16 32 H 0.34 8.33 9.04 45.56 0.41 8.74 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -33.69 318.70 -7.38 -41.08 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -2.23 Total: 4.16 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.27 Total: -5.70 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.71 Total: -25.06 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.12 Total: -31.07 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.69 -7.38 -41.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575133113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.077 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds