Wall clock time and date at job start Wed Apr 1 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99945 * 2 1 4 4 C 1.46893 * 110.99968 * 123.95254 * 2 1 3 5 5 C 1.53002 * 109.46967 * 169.99940 * 4 2 1 6 6 C 1.50707 * 109.46933 * 180.02562 * 5 4 2 7 7 C 1.38350 * 119.85556 * 89.99821 * 6 5 4 8 8 C 1.37961 * 120.14525 * 179.97438 * 7 6 5 9 9 C 1.39581 * 119.85411 * 0.02608 * 8 7 6 10 10 C 1.47841 * 120.14589 * 179.97438 * 9 8 7 11 11 O 1.21547 * 119.99909 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99665 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99781 * 180.02562 * 12 10 9 14 14 C 1.53349 * 109.41429 * 275.12358 * 13 12 10 15 15 C 1.53194 * 109.14721 * 178.67503 * 14 13 12 16 16 N 1.46924 * 108.89447 * 54.57940 * 15 14 13 17 17 C 1.36930 * 120.63300 * 126.34039 * 16 15 14 18 18 H 1.07996 * 120.00049 * 331.82927 * 17 16 15 19 19 C 1.38816 * 120.00324 * 151.82723 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.06571 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.06593 * 19 17 16 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47338 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47085 * 239.99957 * 21 19 17 25 25 C 1.46929 * 118.73622 * 306.31812 * 16 15 14 26 26 C 1.53036 * 109.45797 * 154.99714 * 13 12 10 27 27 C 1.39582 * 119.70529 * 0.25141 * 9 8 7 28 28 C 1.37959 * 119.85462 * 359.47111 * 27 9 8 29 29 H 1.09001 * 109.46559 * 296.04972 * 1 2 3 30 30 H 1.09003 * 109.46857 * 56.04518 * 1 2 3 31 31 H 1.08997 * 109.47066 * 176.04909 * 1 2 3 32 32 H 1.09001 * 109.46996 * 183.95892 * 3 2 1 33 33 H 1.09006 * 109.47052 * 303.95040 * 3 2 1 34 34 H 1.08994 * 109.47228 * 63.95290 * 3 2 1 35 35 H 1.09005 * 109.47248 * 50.00149 * 4 2 1 36 36 H 1.09004 * 109.47620 * 289.99996 * 4 2 1 37 37 H 1.08992 * 109.47055 * 60.00358 * 5 4 2 38 38 H 1.08998 * 109.47249 * 299.99566 * 5 4 2 39 39 H 1.08001 * 119.93070 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.07578 * 179.97438 * 8 7 6 41 41 H 0.97000 * 120.00570 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.46012 * 35.02230 * 13 12 10 43 43 H 1.08999 * 109.68685 * 58.71184 * 14 13 12 44 44 H 1.08997 * 109.47481 * 298.51074 * 14 13 12 45 45 H 1.08999 * 109.58554 * 294.71486 * 15 14 13 46 46 H 1.09001 * 109.58356 * 174.43691 * 15 14 13 47 47 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58736 * 173.39352 * 25 16 15 49 49 H 1.08995 * 109.58640 * 293.68128 * 25 16 15 50 50 H 1.08993 * 109.50017 * 61.43628 * 26 13 12 51 51 H 1.08996 * 109.50185 * 301.33275 * 26 13 12 52 52 H 1.08000 * 120.06978 * 179.72922 * 27 9 8 53 53 H 1.07999 * 119.92510 * 180.28358 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9553 0.9703 6 6 4.0445 -1.7416 2.1370 7 6 4.0966 -3.1226 2.0718 8 6 4.5903 -3.8483 3.1362 9 6 5.0372 -3.1864 4.2809 10 6 5.5669 -3.9577 5.4255 11 8 5.6135 -5.1711 5.3712 12 7 5.9971 -3.3155 6.5295 13 6 6.5225 -4.0798 7.6636 14 6 5.3601 -4.5334 8.5550 15 6 5.9133 -5.3597 9.7203 16 7 6.9387 -4.5718 10.4177 17 6 6.8594 -4.3632 11.7687 18 1 5.8966 -4.3529 12.2579 19 6 8.0164 -4.1649 12.5096 20 7 9.1855 -4.5001 12.0063 21 14 7.9142 -3.4227 14.2207 22 1 6.4954 -3.1350 14.5515 23 1 8.4691 -4.3810 15.2100 24 1 8.6968 -2.1612 14.2606 25 6 8.0513 -4.0124 9.6379 26 6 7.4773 -3.1994 8.4731 27 6 4.9763 -1.7932 4.3424 28 6 4.4857 -1.0792 3.2687 29 1 -0.3632 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0710 33 1 1.5899 1.9163 -0.8525 34 1 1.7044 1.8723 0.9232 35 1 1.5090 -1.7406 1.1756 36 1 1.7976 -0.2247 2.0628 37 1 3.9909 0.0193 0.9323 38 1 3.7024 -1.4966 0.0451 39 1 3.7502 -3.6337 1.1857 40 1 4.6301 -4.9263 3.0842 41 1 5.9595 -2.3472 6.5730 42 1 7.0591 -4.9540 7.2949 43 1 4.6676 -5.1422 7.9738 44 1 4.8382 -3.6593 8.9443 45 1 6.3561 -6.2795 9.3383 46 1 5.1062 -5.6025 10.4116 47 1 9.9940 -4.3619 12.5242 48 1 8.6538 -3.3640 10.2741 49 1 8.6700 -4.8221 9.2512 50 1 6.9355 -2.3379 8.8631 51 1 8.2902 -2.8588 7.8319 52 1 5.3164 -1.2752 5.2270 53 1 4.4424 -0.0010 3.3133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847458564.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:39 Heat of formation + Delta-G solvation = -11.825734 kcal Electronic energy + Delta-G solvation = -29437.295349 eV Core-core repulsion = 25501.080340 eV Total energy + Delta-G solvation = -3936.215009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.40338 -40.02518 -38.91727 -38.23827 -36.07432 -34.41742 -33.76391 -32.09795 -31.73016 -31.24041 -29.83993 -28.44541 -27.07921 -25.90528 -24.18852 -23.87419 -23.58574 -22.94965 -21.86620 -21.25137 -20.93527 -19.20730 -18.45441 -17.46898 -16.93764 -16.82131 -16.46612 -16.07325 -16.04571 -15.92858 -15.65187 -15.57076 -15.37832 -15.27302 -14.83262 -14.58371 -14.41356 -14.20111 -14.11862 -14.01884 -13.73851 -13.23654 -13.21107 -13.03719 -12.84389 -12.69418 -12.63781 -12.54699 -12.44846 -12.25036 -12.15459 -12.13466 -12.00868 -11.89275 -11.63554 -11.58167 -11.39899 -10.96804 -10.57739 -10.13270 -9.95687 -9.69399 -9.30968 -8.72297 -7.88839 -5.34701 -0.17506 0.41497 1.47201 1.49143 1.59975 1.82511 2.11787 2.51234 2.82534 3.04919 3.27179 3.60668 3.68454 3.79218 3.87861 3.98226 4.01687 4.03401 4.10011 4.23387 4.29446 4.33575 4.42954 4.43802 4.49098 4.52108 4.62093 4.63437 4.71784 4.75810 4.77978 4.82796 4.86059 4.94636 4.99111 5.02305 5.02996 5.05025 5.10466 5.12299 5.20909 5.26682 5.31602 5.40062 5.45041 5.50122 5.60620 5.63728 5.69777 5.92492 6.07056 6.10087 6.37884 6.54662 7.13339 7.19687 7.82422 8.35802 9.18534 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.021938 B = 0.001707 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.046827 B =16403.846467 C =16911.870806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.560 5.560 3 C 0.017 3.983 4 C 0.062 3.938 5 C -0.073 4.073 6 C -0.053 4.053 7 C -0.123 4.123 8 C -0.073 4.073 9 C -0.154 4.154 10 C 0.551 3.449 11 O -0.585 6.585 12 N -0.706 5.706 13 C 0.161 3.839 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.178 3.822 26 C -0.128 4.128 27 C -0.081 4.081 28 C -0.122 4.122 29 H 0.025 0.975 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.122 0.878 41 H 0.412 0.588 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.007 0.993 46 H 0.058 0.942 47 H 0.251 0.749 48 H 0.065 0.935 49 H -0.006 1.006 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.145 0.855 53 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 14.411 -26.217 33.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.284 5.284 3 C -0.131 4.131 4 C -0.066 4.066 5 C -0.110 4.110 6 C -0.054 4.054 7 C -0.141 4.141 8 C -0.093 4.093 9 C -0.157 4.157 10 C 0.341 3.659 11 O -0.466 6.466 12 N -0.356 5.356 13 C 0.057 3.943 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.214 1.214 25 C 0.052 3.948 26 C -0.168 4.168 27 C -0.100 4.100 28 C -0.140 4.140 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.250 0.750 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.025 0.975 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.012 0.988 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.163 0.837 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.332 13.351 -26.583 33.020 hybrid contribution 0.140 0.418 2.008 2.056 sum -14.192 13.769 -24.575 31.542 Atomic orbital electron populations 1.22420 0.86649 1.02654 1.00857 1.62007 1.08574 1.14735 1.43099 1.22512 1.01553 0.88157 1.00828 1.22078 0.94761 0.98438 0.91332 1.20615 0.94494 1.00422 0.95467 1.20267 0.95763 0.93656 0.95744 1.21226 1.00183 0.93860 0.98789 1.21325 0.95191 1.00567 0.92169 1.19905 1.06122 0.94703 0.95010 1.18813 0.76969 0.87118 0.83036 1.90741 1.57432 1.15725 1.82730 1.45980 1.63445 1.11082 1.15138 1.20753 0.94223 0.94390 0.84961 1.22224 0.97316 1.00366 0.96442 1.20957 0.91758 0.92252 0.93224 1.44339 1.26107 1.58657 1.04048 1.19555 0.92341 1.43127 0.84321 0.91465 1.25826 0.95545 1.01601 1.01507 1.70195 0.98038 1.50677 1.39236 0.85178 0.77867 0.77540 0.79659 1.19086 1.22141 1.21366 1.20570 0.89105 0.94463 0.90654 1.22257 0.98609 0.98686 0.97205 1.21525 0.96912 0.91756 0.99762 1.21282 0.99072 1.01272 0.92364 0.95676 0.90540 0.91174 0.90372 0.90845 0.95541 0.90872 0.94720 0.89449 0.89547 0.83540 0.86020 0.75038 0.92479 0.92357 0.91363 0.97547 0.92334 0.94001 0.91713 0.98765 0.90892 0.90432 0.83714 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 127.69 1.22 1.42 16 2 N -0.56 -5.94 5.02 -948.82 -4.76 -10.70 16 3 C 0.02 0.14 9.32 127.69 1.19 1.33 16 4 C 0.06 0.64 4.94 86.31 0.43 1.07 16 5 C -0.07 -0.68 5.26 29.85 0.16 -0.52 16 6 C -0.05 -0.70 5.14 -19.81 -0.10 -0.80 16 7 C -0.12 -1.95 9.68 22.23 0.22 -1.73 16 8 C -0.07 -1.62 9.60 22.53 0.22 -1.40 16 9 C -0.15 -3.62 5.87 -20.09 -0.12 -3.74 16 10 C 0.55 16.88 7.74 86.79 0.67 17.55 16 11 O -0.58 -23.00 16.01 -3.86 -0.06 -23.06 16 12 N -0.71 -19.55 5.03 -444.79 -2.24 -21.79 16 13 C 0.16 5.64 2.42 45.12 0.11 5.75 16 14 C -0.12 -4.53 5.68 30.78 0.17 -4.35 16 15 C 0.14 6.37 6.50 86.36 0.56 6.93 16 16 N -0.61 -30.92 2.99 -699.08 -2.09 -33.01 16 17 C -0.26 -14.51 9.58 84.04 0.81 -13.70 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 19 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 20 N -0.94 -55.24 11.20 21.65 0.24 -54.99 16 21 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.18 8.57 5.30 86.37 0.46 9.03 16 26 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 27 C -0.08 -1.35 9.54 22.53 0.21 -1.13 16 28 C -0.12 -1.58 9.68 22.23 0.22 -1.37 16 29 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 31 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.08 0.52 6.47 -2.39 -0.02 0.50 16 33 H 0.07 0.50 8.12 -2.38 -0.02 0.48 16 34 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 0.83 8.06 -2.38 -0.02 0.81 16 36 H 0.03 0.38 8.12 -2.38 -0.02 0.36 16 37 H 0.09 0.64 6.49 -2.39 -0.02 0.63 16 38 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.12 2.95 7.65 -2.91 -0.02 2.93 16 41 H 0.41 8.52 6.64 -92.71 -0.62 7.91 16 42 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 46 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 49 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 50 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.15 1.79 6.41 -2.91 -0.02 1.77 16 53 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -70.79 418.75 0.39 -70.40 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.27 Total: 19.05 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.01 Total: 7.59 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -8.85 Total: -120.50 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.79 0.39 -70.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847458564.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.569 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds