Wall clock time and date at job start Wed Apr 1 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00490 * 2 1 4 4 C 1.46902 * 111.00316 * 123.95859 * 2 1 3 5 5 C 1.52997 * 109.47218 * 169.99644 * 4 2 1 6 6 C 1.50707 * 109.47005 * 179.97438 * 5 4 2 7 7 C 1.38364 * 119.85415 * 89.99805 * 6 5 4 8 8 C 1.37952 * 120.14221 * 180.02562 * 7 6 5 9 9 C 1.39573 * 119.85775 * 359.97347 * 8 7 6 10 10 C 1.47841 * 120.14531 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99784 * 221.64616 * 10 9 8 12 12 N 1.34773 * 119.99921 * 41.64988 * 10 9 8 13 13 C 1.46490 * 120.00123 * 355.84391 * 12 10 9 14 14 C 1.46503 * 119.99840 * 175.84323 * 12 10 9 15 15 H 1.09005 * 110.64400 * 1.68917 * 14 12 10 16 16 C 1.55159 * 110.87013 * 124.93634 * 14 12 10 17 17 C 1.55132 * 101.48527 * 82.76922 * 16 14 12 18 18 N 1.47427 * 104.72275 * 37.29404 * 17 16 14 19 19 C 1.36933 * 125.64604 * 155.81950 * 18 17 16 20 20 H 1.07994 * 120.00061 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00175 * 359.69047 * 19 18 17 22 22 N 1.31620 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00134 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47151 * 59.99999 * 23 21 19 25 25 H 1.48504 * 109.47112 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46901 * 300.00057 * 23 21 19 27 27 C 1.47025 * 108.70128 * 335.55127 * 18 17 16 28 28 C 1.39579 * 119.70858 * 0.26112 * 9 8 7 29 29 C 1.37955 * 119.85110 * 359.50899 * 28 9 8 30 30 H 1.09005 * 109.46785 * 296.04577 * 1 2 3 31 31 H 1.08997 * 109.47066 * 56.04055 * 1 2 3 32 32 H 1.09000 * 109.47321 * 176.04526 * 1 2 3 33 33 H 1.08996 * 109.47357 * 183.95413 * 3 2 1 34 34 H 1.09000 * 109.46779 * 303.95921 * 3 2 1 35 35 H 1.09001 * 109.46882 * 63.95614 * 3 2 1 36 36 H 1.09001 * 109.46766 * 49.99352 * 4 2 1 37 37 H 1.09001 * 109.46681 * 289.99692 * 4 2 1 38 38 H 1.09001 * 109.47490 * 60.00152 * 5 4 2 39 39 H 1.09001 * 109.47334 * 299.99649 * 5 4 2 40 40 H 1.07997 * 119.92458 * 359.97438 * 7 6 5 41 41 H 1.08005 * 120.07209 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47430 * 270.88321 * 13 12 10 43 43 H 1.09003 * 109.47223 * 30.88320 * 13 12 10 44 44 H 1.09006 * 109.47454 * 150.88379 * 13 12 10 45 45 H 1.09000 * 111.00171 * 201.00224 * 16 14 12 46 46 H 1.08997 * 111.00734 * 324.85811 * 16 14 12 47 47 H 1.09004 * 110.49039 * 278.45260 * 17 16 14 48 48 H 1.09004 * 110.34098 * 156.05916 * 17 16 14 49 49 H 0.97010 * 119.99913 * 179.97438 * 22 21 19 50 50 H 1.09007 * 109.87508 * 120.70645 * 27 18 17 51 51 H 1.08995 * 109.88283 * 241.86906 * 27 18 17 52 52 H 1.08000 * 120.07352 * 179.72690 * 28 9 8 53 53 H 1.08001 * 119.92775 * 180.23355 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9555 0.9702 6 6 4.0447 -1.7408 2.1375 7 6 4.0969 -3.1220 2.0733 8 6 4.5898 -3.8468 3.1385 9 6 5.0368 -3.1840 4.2826 10 6 5.5657 -3.9545 5.4281 11 8 5.2678 -3.6375 6.5632 12 7 6.3782 -5.0082 5.2139 13 6 6.6645 -5.4462 3.8457 14 6 6.9752 -5.7155 6.3495 15 1 6.6382 -5.2833 7.2917 16 6 6.6461 -7.2307 6.2918 17 6 7.7324 -7.7457 5.3113 18 7 8.9349 -6.9573 5.6367 19 6 10.2280 -7.3374 5.3946 20 1 11.0433 -6.6856 5.6714 21 6 10.4911 -8.5633 4.7988 22 7 9.4977 -9.3600 4.4661 23 14 12.2550 -9.0815 4.4679 24 1 13.0031 -9.1376 5.7494 25 1 12.2656 -10.4225 3.8300 26 1 12.8985 -8.0966 3.5617 27 6 8.5156 -5.6927 6.2583 28 6 4.9768 -1.7908 4.3428 29 6 4.4861 -1.0776 3.2686 30 1 -0.3633 0.4513 0.9234 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0709 34 1 1.5898 1.9163 -0.8524 35 1 1.7045 1.8723 0.9233 36 1 1.5089 -1.7407 1.1755 37 1 1.7976 -0.2248 2.0627 38 1 3.9910 0.0192 0.9322 39 1 3.7023 -1.4967 0.0449 40 1 3.7503 -3.6337 1.1876 41 1 4.6297 -4.9249 3.0874 42 1 5.9162 -6.1745 3.5332 43 1 6.6368 -4.5867 3.1757 44 1 7.6534 -5.9032 3.8097 45 1 6.7520 -7.6912 7.2741 46 1 5.6474 -7.3986 5.8889 47 1 7.4300 -7.5679 4.2792 48 1 7.9186 -8.8070 5.4755 49 1 9.6815 -10.2165 4.0494 50 1 8.9449 -5.6103 7.2569 51 1 8.8381 -4.8525 5.6434 52 1 5.3170 -1.2721 5.2269 53 1 4.4425 0.0007 3.3124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033422425.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:52 Heat of formation + Delta-G solvation = 21.920598 kcal Electronic energy + Delta-G solvation = -30271.365698 eV Core-core repulsion = 26336.614040 eV Total energy + Delta-G solvation = -3934.751659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68719 -40.11946 -38.97336 -38.24941 -36.09770 -34.47248 -33.66197 -32.00163 -31.14334 -30.09945 -29.41225 -28.44627 -27.73662 -26.51288 -25.68189 -23.74911 -23.42415 -22.12700 -22.01863 -21.47338 -20.28104 -18.96748 -18.50135 -17.77372 -17.07063 -16.84415 -16.67731 -16.31144 -16.09729 -15.95213 -15.70617 -15.51584 -15.48719 -14.84005 -14.62031 -14.41145 -14.09018 -14.06311 -13.87591 -13.80613 -13.58203 -13.35554 -13.28461 -13.12618 -12.95939 -12.82622 -12.75719 -12.67815 -12.47516 -12.39930 -12.18346 -12.11634 -12.05962 -11.94078 -11.80558 -11.62061 -11.42067 -10.89994 -10.67325 -9.93818 -9.77727 -9.62969 -9.30631 -8.87262 -7.75261 -5.19587 -0.07402 0.41501 1.48818 1.50829 1.57212 1.61828 1.92813 2.50712 2.72946 3.04755 3.34521 3.41786 3.70075 3.81727 3.85616 3.95264 3.97357 4.01804 4.12259 4.22806 4.24558 4.27827 4.33612 4.43197 4.50759 4.51895 4.57432 4.62209 4.64177 4.67126 4.72453 4.76065 4.84275 4.86279 4.90012 4.95943 5.00900 5.03305 5.05087 5.08505 5.11480 5.21376 5.33423 5.36356 5.46667 5.54874 5.61385 5.65944 5.83269 5.93503 6.07484 6.10465 6.32570 6.34850 7.01664 7.12823 7.77964 8.42016 9.25391 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002038 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.873088 B =13735.356392 C =14401.733582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.560 5.560 3 C 0.018 3.982 4 C 0.063 3.937 5 C -0.072 4.072 6 C -0.057 4.057 7 C -0.119 4.119 8 C -0.089 4.089 9 C -0.148 4.148 10 C 0.555 3.445 11 O -0.582 6.582 12 N -0.587 5.587 13 C 0.073 3.927 14 C 0.135 3.865 15 H 0.101 0.899 16 C -0.139 4.139 17 C 0.151 3.849 18 N -0.618 5.618 19 C -0.239 4.239 20 H 0.076 0.924 21 C -0.060 4.060 22 N -0.943 5.943 23 Si 0.977 3.023 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.129 3.871 28 C -0.077 4.077 29 C -0.121 4.121 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.248 0.752 50 H 0.033 0.967 51 H 0.022 0.978 52 H 0.123 0.877 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 18.792 -10.160 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.284 5.284 3 C -0.130 4.130 4 C -0.065 4.065 5 C -0.109 4.109 6 C -0.057 4.057 7 C -0.137 4.137 8 C -0.107 4.107 9 C -0.151 4.151 10 C 0.345 3.655 11 O -0.463 6.463 12 N -0.318 5.318 13 C -0.069 4.069 14 C 0.031 3.969 15 H 0.119 0.881 16 C -0.179 4.179 17 C 0.027 3.973 18 N -0.344 5.344 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.253 4.253 22 N -0.592 5.592 23 Si 0.806 3.194 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.206 1.206 27 C 0.003 3.997 28 C -0.096 4.096 29 C -0.139 4.139 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.036 0.964 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.051 0.949 51 H 0.040 0.960 52 H 0.141 0.859 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.265 18.545 -10.094 27.275 hybrid contribution 0.903 -0.245 0.945 1.330 sum -16.362 18.300 -9.150 26.198 Atomic orbital electron populations 1.22420 0.86585 1.02709 1.00835 1.62003 1.08621 1.14667 1.43078 1.22507 1.01505 0.88224 1.00799 1.22073 0.94742 0.98500 0.91214 1.20603 0.94504 1.00336 0.95483 1.20235 0.96076 0.93976 0.95461 1.21278 0.99699 0.93663 0.99036 1.21672 0.96243 1.01144 0.91666 1.19796 1.05728 0.94789 0.94789 1.18900 0.77864 0.79645 0.89043 1.90711 1.60711 1.69728 1.25185 1.47737 1.46007 1.30019 1.07995 1.22323 1.02567 1.00658 0.81327 1.21928 0.92098 0.93184 0.89664 0.88090 1.23238 0.99687 0.93742 1.01183 1.21980 0.83580 0.97681 0.94104 1.44722 1.02434 1.16510 1.70763 1.19327 0.83342 1.00958 1.33142 0.90620 1.25529 1.01284 0.97092 1.01401 1.70012 1.30146 1.11147 1.47931 0.85173 0.79627 0.76861 0.77747 1.20745 1.21872 1.20572 1.21680 0.92824 0.89024 0.96186 1.21222 0.97282 0.92019 0.99084 1.21181 0.99330 1.00947 0.92397 0.95712 0.90505 0.91090 0.90516 0.90747 0.95620 0.90650 0.94962 0.89779 0.89314 0.83020 0.84285 0.91018 0.89446 0.91285 0.90655 0.90147 0.96441 0.90963 0.94245 0.94897 0.95963 0.85907 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.56 -6.78 5.02 -948.85 -4.76 -11.55 16 3 C 0.02 0.17 9.32 127.69 1.19 1.36 16 4 C 0.06 0.76 4.94 86.30 0.43 1.19 16 5 C -0.07 -0.84 5.26 29.85 0.16 -0.68 16 6 C -0.06 -0.89 5.14 -19.80 -0.10 -0.99 16 7 C -0.12 -2.01 9.68 22.23 0.22 -1.80 16 8 C -0.09 -1.93 7.54 22.52 0.17 -1.76 16 9 C -0.15 -4.00 5.14 -20.09 -0.10 -4.10 16 10 C 0.55 18.82 7.33 86.79 0.64 19.46 16 11 O -0.58 -23.33 16.32 -3.89 -0.06 -23.40 16 12 N -0.59 -19.96 2.82 -819.37 -2.31 -22.28 16 13 C 0.07 2.26 7.04 127.77 0.90 3.16 16 14 C 0.14 5.09 3.57 46.18 0.16 5.25 16 15 H 0.10 3.82 7.00 -2.38 -0.02 3.81 16 16 C -0.14 -5.29 6.55 32.07 0.21 -5.08 16 17 C 0.15 7.07 5.03 86.93 0.44 7.51 16 18 N -0.62 -30.98 2.98 -691.53 -2.06 -33.04 16 19 C -0.24 -13.13 10.27 84.03 0.86 -12.26 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 22 N -0.94 -54.04 10.08 21.65 0.22 -53.82 16 23 Si 0.98 44.84 29.55 68.60 2.03 46.87 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.13 5.53 6.25 86.73 0.54 6.07 16 28 C -0.08 -1.83 9.65 22.53 0.22 -1.62 16 29 C -0.12 -2.13 9.68 22.23 0.22 -1.91 16 30 H 0.02 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.07 0.68 8.12 -2.39 -0.02 0.67 16 33 H 0.08 0.66 6.47 -2.39 -0.02 0.64 16 34 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 35 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.08 0.96 8.06 -2.39 -0.02 0.94 16 37 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 38 H 0.08 0.85 6.49 -2.39 -0.02 0.83 16 39 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.14 2.85 5.68 -2.91 -0.02 2.83 16 42 H 0.07 1.96 7.01 -2.39 -0.02 1.95 16 43 H 0.09 2.32 5.69 -2.39 -0.01 2.31 16 44 H 0.07 2.66 5.13 -2.38 -0.01 2.65 16 45 H 0.07 2.81 8.14 -2.39 -0.02 2.80 16 46 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.02 0.84 5.54 -2.38 -0.01 0.82 16 48 H 0.07 3.92 5.86 -2.39 -0.01 3.91 16 49 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 50 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 51 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 52 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 53 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -66.94 408.11 1.77 -65.17 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.89 Total: 19.63 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 7.83 Total: 12.40 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -8.92 Total: -120.68 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.94 1.77 -65.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033422425.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.091 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds