Wall clock time and date at job start Wed Apr 1 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47154 * 299.99882 * 3 2 1 6 6 H 1.48493 * 109.47288 * 60.00043 * 3 2 1 7 7 C 1.37878 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00146 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99833 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40008 * 66.46647 * 9 7 2 11 11 O 1.42099 * 106.40540 * 293.54111 * 9 7 2 12 12 N 1.65608 * 107.21790 * 180.02562 * 9 7 2 13 13 C 1.37651 * 119.99814 * 65.00114 * 12 9 7 14 14 N 1.30850 * 124.96222 * 180.02562 * 13 12 9 15 15 C 1.36142 * 108.70145 * 180.02562 * 14 13 12 16 16 C 1.39551 * 133.65532 * 180.02562 * 15 14 13 17 17 C 1.37853 * 119.71860 * 179.97438 * 16 15 14 18 18 Br 1.89104 * 119.81314 * 179.97438 * 17 16 15 19 19 C 1.38718 * 120.37191 * 0.02562 * 17 16 15 20 20 C 1.38030 * 120.44961 * 359.97438 * 19 17 16 21 21 C 1.38532 * 119.91192 * 0.02562 * 20 19 17 22 22 O 1.34459 * 124.95913 * 359.69552 * 13 12 9 23 23 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00068 * 244.72731 * 12 9 7 25 25 H 1.08000 * 120.13977 * 359.92868 * 16 15 14 26 26 H 1.07997 * 119.77583 * 180.02562 * 19 17 16 27 27 H 1.08001 * 120.04190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9355 -0.0005 13 6 3.0855 -4.0984 1.0799 14 7 4.0063 -5.0224 1.1823 15 6 4.6356 -4.8806 2.3812 16 6 5.6733 -5.5683 3.0118 17 6 6.0973 -5.1694 4.2614 18 35 7.5028 -6.0998 5.1187 19 6 5.4980 -4.0901 4.8940 20 6 4.4707 -3.4019 4.2805 21 6 4.0326 -3.7897 3.0248 22 8 3.0806 -3.3275 2.1815 23 1 -0.4851 0.8400 -0.0004 24 1 2.3145 -4.5350 -0.7601 25 1 6.1418 -6.4098 2.5232 26 1 5.8380 -3.7856 5.8727 27 1 4.0085 -2.5628 4.7792 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935607.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:36 Heat of formation + Delta-G solvation = -38.857025 kcal Electronic energy + Delta-G solvation = -19642.848387 eV Core-core repulsion = 16154.469414 eV Total energy + Delta-G solvation = -3488.378973 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 345.946 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.13702 -38.26158 -35.71553 -35.47907 -34.45902 -34.09886 -33.31196 -32.00937 -29.97251 -28.45762 -26.41484 -23.36156 -22.91468 -21.87860 -19.70580 -18.61594 -17.85831 -17.38021 -16.94013 -16.69849 -16.23324 -15.26896 -15.04014 -14.30219 -14.20454 -13.93440 -13.85843 -13.15552 -12.46693 -12.35522 -12.08613 -11.70378 -11.54144 -11.37205 -11.20323 -11.12761 -10.74514 -10.71354 -10.64637 -10.53915 -10.35176 -10.34844 -9.45932 -9.13903 -8.71477 -8.07891 -6.94354 -5.59809 0.71622 0.94215 1.37018 1.44980 2.26665 2.52656 2.94374 3.02867 3.10433 3.47514 3.72136 3.97444 4.40425 4.42711 4.68180 4.87188 4.94375 5.17259 5.25565 5.37661 5.70826 5.89306 5.94355 6.00794 6.14090 6.19576 6.37065 7.05175 7.09324 7.66896 7.75630 8.64276 10.00932 Molecular weight = 345.95amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003134 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.088776 B = 8932.074820 C = 9681.765516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.135 3.865 3 Si 0.928 3.072 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.268 1.268 7 C -1.007 5.007 8 H 0.107 0.893 9 S 2.678 3.322 10 O -0.971 6.971 11 O -0.970 6.970 12 N -0.992 5.992 13 C 0.530 3.470 14 N -0.524 5.524 15 C 0.062 3.938 16 C -0.048 4.048 17 C -0.086 4.086 18 Br -0.045 7.045 19 C -0.090 4.090 20 C -0.067 4.067 21 C 0.015 3.985 22 O -0.195 6.195 23 H 0.295 0.705 24 H 0.444 0.556 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.782 -8.370 9.611 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.085 4.085 3 Si 0.751 3.249 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.193 1.193 7 C -1.141 5.141 8 H 0.125 0.875 9 S 2.779 3.221 10 O -0.962 6.962 11 O -0.960 6.960 12 N -0.743 5.743 13 C 0.226 3.774 14 N -0.265 5.265 15 C -0.053 4.053 16 C -0.069 4.069 17 C -0.167 4.167 18 Br 0.041 6.959 19 C -0.110 4.110 20 C -0.086 4.086 21 C -0.037 4.037 22 O -0.084 6.084 23 H 0.106 0.894 24 H 0.283 0.717 25 H 0.162 0.838 26 H 0.165 0.835 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.198 -9.100 9.563 18.667 hybrid contribution 0.303 1.636 -0.261 1.684 sum 13.501 -7.464 9.302 18.014 Atomic orbital electron populations 1.69872 1.06777 1.31254 1.39020 1.24751 0.94599 1.00952 0.88172 0.85994 0.80406 0.79617 0.78836 1.18433 1.19308 1.19300 1.30195 1.06000 1.10016 1.67928 0.87510 1.02072 0.72447 0.73751 0.73862 1.93458 1.71098 1.86662 1.44937 1.93447 1.71214 1.86386 1.44960 1.53919 1.48840 1.50767 1.20814 1.20877 0.89002 0.84613 0.82886 1.71123 1.11490 1.24671 1.19208 1.19551 0.98227 0.96142 0.91333 1.20002 0.94670 0.99612 0.92639 1.21394 0.98890 0.99794 0.96638 1.96702 1.45017 1.75417 1.78808 1.20781 0.95538 0.94358 1.00344 1.19876 0.97063 1.01294 0.90391 1.20186 0.91948 0.97348 0.94212 1.84708 1.49262 1.49679 1.24750 0.89447 0.71728 0.83828 0.83500 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.21 13.19 55.43 0.73 -22.48 15 2 C 0.13 3.54 5.46 -17.82 -0.10 3.45 15 3 Si 0.93 19.61 29.54 -169.99 -5.02 14.59 15 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -1.01 -26.16 9.67 30.60 0.30 -25.87 15 8 H 0.11 2.59 7.81 -52.48 -0.41 2.18 15 9 S 2.68 66.73 4.76 -107.50 -0.51 66.22 15 10 O -0.97 -26.01 18.02 -57.17 -1.03 -27.04 15 11 O -0.97 -26.79 17.21 -62.09 -1.07 -27.85 15 12 N -0.99 -19.42 5.82 29.68 0.17 -19.25 15 13 C 0.53 10.59 8.66 -87.65 -0.76 9.83 15 14 N -0.52 -9.66 11.39 -12.13 -0.14 -9.79 15 15 C 0.06 1.03 7.23 -84.70 -0.61 0.42 15 16 C -0.05 -0.64 9.83 -39.23 -0.39 -1.02 15 17 C -0.09 -1.01 6.22 -39.55 -0.25 -1.26 15 18 Br -0.04 -0.43 33.68 -68.01 -2.29 -2.72 15 19 C -0.09 -0.99 9.76 -39.48 -0.39 -1.37 15 20 C -0.07 -0.88 10.06 -39.55 -0.40 -1.28 15 21 C 0.02 0.26 7.42 -38.71 -0.29 -0.03 15 22 O -0.19 -4.04 9.82 -5.88 -0.06 -4.10 15 23 H 0.29 7.27 8.31 -40.82 -0.34 6.93 15 24 H 0.44 6.98 8.95 -34.48 -0.31 6.68 15 25 H 0.14 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.15 1.18 8.06 -52.49 -0.42 0.76 15 27 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 288.30 15.07 4.34 4.34 Total: -1.00 -32.39 288.30 -8.87 -41.26 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.12 Total: 3.96 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.87 Total: -17.13 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.77 Total: -51.52 kcal Atomic # 8 Polarization: -56.84 SS G_CDS: -2.16 Total: -59.00 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 66.73 SS G_CDS: -0.51 Total: 66.22 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.39 -8.87 -41.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935607.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.405 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds