Wall clock time and date at job start Wed Apr 1 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00027 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47154 * 299.99882 * 3 2 1 6 6 H 1.48493 * 109.47288 * 60.00043 * 3 2 1 7 7 C 1.37878 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00146 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99833 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40008 * 66.46647 * 9 7 2 11 11 O 1.42099 * 106.40540 * 293.54111 * 9 7 2 12 12 N 1.65608 * 107.21790 * 180.02562 * 9 7 2 13 13 C 1.37651 * 119.99814 * 65.00114 * 12 9 7 14 14 N 1.30850 * 124.96222 * 180.02562 * 13 12 9 15 15 C 1.36142 * 108.70145 * 180.02562 * 14 13 12 16 16 C 1.39551 * 133.65532 * 180.02562 * 15 14 13 17 17 C 1.37853 * 119.71860 * 179.97438 * 16 15 14 18 18 Br 1.89104 * 119.81314 * 179.97438 * 17 16 15 19 19 C 1.38718 * 120.37191 * 0.02562 * 17 16 15 20 20 C 1.38030 * 120.44961 * 359.97438 * 19 17 16 21 21 C 1.38532 * 119.91192 * 0.02562 * 20 19 17 22 22 O 1.34459 * 124.95913 * 359.69552 * 13 12 9 23 23 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00068 * 244.72731 * 12 9 7 25 25 H 1.08000 * 120.13977 * 359.92868 * 16 15 14 26 26 H 1.07997 * 119.77583 * 180.02562 * 19 17 16 27 27 H 1.08001 * 120.04190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9355 -0.0005 13 6 3.0855 -4.0984 1.0799 14 7 4.0063 -5.0224 1.1823 15 6 4.6356 -4.8806 2.3812 16 6 5.6733 -5.5683 3.0118 17 6 6.0973 -5.1694 4.2614 18 35 7.5028 -6.0998 5.1187 19 6 5.4980 -4.0901 4.8940 20 6 4.4707 -3.4019 4.2805 21 6 4.0326 -3.7897 3.0248 22 8 3.0806 -3.3275 2.1815 23 1 -0.4851 0.8400 -0.0004 24 1 2.3145 -4.5350 -0.7601 25 1 6.1418 -6.4098 2.5232 26 1 5.8380 -3.7856 5.8727 27 1 4.0085 -2.5628 4.7792 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935607.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:36 Heat of formation + Delta-G solvation = -65.103436 kcal Electronic energy + Delta-G solvation = -19643.986517 eV Core-core repulsion = 16154.469414 eV Total energy + Delta-G solvation = -3489.517103 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 345.946 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.47390 -39.38855 -37.76299 -36.99515 -36.51643 -35.49965 -35.24937 -33.01194 -31.05723 -29.58866 -28.42818 -24.64948 -24.16906 -23.14327 -21.45494 -20.31806 -19.29221 -18.96131 -18.47131 -18.16567 -17.76184 -17.03444 -16.31286 -16.09859 -15.84984 -15.25381 -15.03772 -14.27460 -14.11946 -13.68111 -13.55700 -13.41367 -13.14392 -13.08853 -12.80759 -12.75722 -12.72599 -12.35011 -12.33180 -11.72082 -11.49198 -11.33905 -11.33424 -11.07822 -9.76843 -9.34666 -8.88179 -7.64181 -0.45650 -0.37151 -0.17380 0.42962 0.85239 1.19111 1.30804 1.32665 1.50309 2.10590 2.34886 2.35206 2.49001 3.07735 3.28531 3.42683 3.80809 3.91781 3.98133 4.07676 4.23721 4.57467 4.74636 4.90987 4.95306 5.01530 5.15268 5.31630 5.58486 5.72516 6.36127 6.64884 8.09923 Molecular weight = 345.95amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.003134 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.088776 B = 8932.074820 C = 9681.765516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.994 3.006 4 H -0.252 1.252 5 H -0.254 1.254 6 H -0.255 1.255 7 C -1.024 5.024 8 H 0.117 0.883 9 S 2.697 3.303 10 O -1.000 7.000 11 O -1.007 7.007 12 N -0.982 5.982 13 C 0.500 3.500 14 N -0.516 5.516 15 C 0.032 3.968 16 C -0.043 4.043 17 C -0.085 4.085 18 Br -0.015 7.015 19 C -0.064 4.064 20 C -0.074 4.074 21 C -0.013 4.013 22 O -0.224 6.224 23 H 0.304 0.696 24 H 0.457 0.543 25 H 0.160 0.840 26 H 0.187 0.813 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.495 -8.067 11.384 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.137 4.137 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.178 1.178 6 H -0.179 1.179 7 C -1.159 5.159 8 H 0.135 0.865 9 S 2.798 3.202 10 O -0.990 6.990 11 O -0.996 6.996 12 N -0.739 5.739 13 C 0.197 3.803 14 N -0.257 5.257 15 C -0.081 4.081 16 C -0.065 4.065 17 C -0.166 4.166 18 Br 0.071 6.929 19 C -0.083 4.083 20 C -0.093 4.093 21 C -0.063 4.063 22 O -0.114 6.114 23 H 0.115 0.885 24 H 0.299 0.701 25 H 0.177 0.823 26 H 0.204 0.796 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.927 -8.840 11.347 21.461 hybrid contribution -0.336 1.364 -0.625 1.538 sum 15.592 -7.475 10.721 20.345 Atomic orbital electron populations 1.69941 1.08514 1.32877 1.40143 1.25955 0.95484 1.05038 0.87262 0.85047 0.79211 0.74796 0.79829 1.17516 1.17817 1.17914 1.30500 1.06710 1.10775 1.67919 0.86451 1.01183 0.72445 0.73922 0.72612 1.93408 1.72526 1.87339 1.45729 1.93390 1.72851 1.87124 1.46242 1.53060 1.48670 1.50389 1.21797 1.20926 0.90265 0.85968 0.83179 1.71025 1.10741 1.23742 1.20197 1.19870 0.99781 0.97358 0.91124 1.20258 0.93521 0.99540 0.93152 1.21673 0.99124 0.99762 0.96050 1.96758 1.43398 1.74850 1.77940 1.21279 0.93331 0.92627 1.01109 1.20305 0.97648 1.02230 0.89133 1.20820 0.91981 0.98184 0.95349 1.84643 1.50696 1.50597 1.25451 0.88506 0.70052 0.82254 0.79593 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.80 13.19 21.45 0.28 -49.52 15 2 C 0.08 4.09 5.46 84.66 0.46 4.56 15 3 Si 0.99 39.47 29.54 68.60 2.03 41.50 15 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 15 5 H -0.25 -9.44 7.11 99.48 0.71 -8.73 15 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 7 C -1.02 -54.23 9.67 67.73 0.65 -53.58 15 8 H 0.12 5.76 7.81 -2.91 -0.02 5.74 15 9 S 2.70 139.52 4.76 -56.49 -0.27 139.25 15 10 O -1.00 -55.58 18.02 -128.00 -2.31 -57.88 15 11 O -1.01 -57.98 17.21 -123.30 -2.12 -60.10 15 12 N -0.98 -40.03 5.82 -170.65 -0.99 -41.03 15 13 C 0.50 20.62 8.66 179.31 1.55 22.18 15 14 N -0.52 -19.25 11.39 -306.53 -3.49 -22.74 15 15 C 0.03 1.06 7.23 39.29 0.28 1.34 15 16 C -0.04 -1.07 9.83 22.50 0.22 -0.85 15 17 C -0.09 -1.72 6.22 22.29 0.14 -1.58 15 18 Br -0.01 -0.23 33.68 -20.37 -0.69 -0.92 15 19 C -0.06 -1.17 9.76 22.34 0.22 -0.95 15 20 C -0.07 -1.82 10.06 22.29 0.22 -1.59 15 21 C -0.01 -0.43 7.42 22.84 0.17 -0.26 15 22 O -0.22 -9.57 9.82 -6.37 -0.06 -9.63 15 23 H 0.30 15.23 8.31 -92.71 -0.77 14.46 15 24 H 0.46 15.06 8.95 -96.75 -0.87 14.20 15 25 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 26 H 0.19 2.00 8.06 -2.91 -0.02 1.97 15 27 H 0.17 3.37 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -71.85 288.30 -3.30 -75.15 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.39 Total: 16.67 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.93 Total: -30.74 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.20 Total: -113.29 kcal Atomic # 8 Polarization: -123.13 SS G_CDS: -4.49 Total: -127.62 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 139.52 SS G_CDS: -0.27 Total: 139.25 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Total: -71.85 -3.30 -75.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935607.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.051 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds