Wall clock time and date at job start Wed Apr 1 2020 04:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48496 * 109.47186 * 354.04328 * 3 2 1 5 5 H 1.48505 * 109.47070 * 114.04784 * 3 2 1 6 6 H 1.48507 * 109.47180 * 234.04048 * 3 2 1 7 7 C 1.38809 * 120.00087 * 180.27798 * 2 1 3 8 8 H 1.08000 * 119.99872 * 14.40084 * 7 2 1 9 9 N 1.36938 * 120.00090 * 194.39942 * 7 2 1 10 10 C 1.47018 * 125.64859 * 6.76240 * 9 7 2 11 11 C 1.54322 * 107.27458 * 181.01895 * 10 9 7 12 12 C 1.55160 * 102.94055 * 22.19135 * 11 10 9 13 13 H 1.08997 * 111.00583 * 82.57224 * 12 11 10 14 14 O 1.42901 * 111.00706 * 206.38459 * 12 11 10 15 15 C 1.35925 * 117.00314 * 203.05561 * 14 12 11 16 16 C 1.38701 * 120.45392 * 175.02095 * 15 14 12 17 17 N 1.31856 * 120.71935 * 179.72529 * 16 15 14 18 18 C 1.31944 * 121.77241 * 0.54453 * 17 16 15 19 19 Cl 1.73601 * 119.57934 * 179.72584 * 18 17 16 20 20 C 1.38460 * 120.83893 * 359.74802 * 18 17 16 21 21 Br 1.89103 * 120.40261 * 180.02562 * 20 18 17 22 22 C 1.38615 * 119.19330 * 359.97438 * 20 18 17 23 23 C 1.47428 * 125.64827 * 186.44571 * 9 7 2 24 24 H 0.96996 * 120.00101 * 185.13960 * 1 2 3 25 25 H 1.09003 * 109.88106 * 300.43617 * 10 9 7 26 26 H 1.09005 * 109.88575 * 61.44519 * 10 9 7 27 27 H 1.08998 * 110.72108 * 140.54912 * 11 10 9 28 28 H 1.08995 * 110.72069 * 263.83090 * 11 10 9 29 29 H 1.08002 * 119.63810 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.81051 * 180.02562 * 22 20 18 31 31 H 1.08992 * 110.36672 * 274.75317 * 23 9 7 32 32 H 1.09006 * 110.36360 * 37.07582 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2917 2.7427 -0.1453 5 1 2.9917 1.7612 1.2786 6 1 3.2097 1.6354 -1.1333 7 6 2.0102 -1.2021 -0.0058 8 1 1.4957 -2.1216 -0.2429 9 7 3.3474 -1.2222 0.2890 10 6 4.1376 -0.0765 0.7629 11 6 5.5919 -0.5630 0.9355 12 6 5.6545 -1.8067 0.0099 13 1 5.8318 -1.5149 -1.0252 14 8 6.6507 -2.7285 0.4571 15 6 7.1537 -3.5897 -0.4665 16 6 8.1953 -4.4442 -0.1370 17 7 8.6837 -5.2854 -1.0272 18 6 8.2150 -5.3427 -2.2593 19 17 8.9052 -6.4673 -3.3873 20 6 7.1799 -4.5169 -2.6640 21 35 6.5172 -4.6098 -4.4327 22 6 6.6347 -3.6220 -1.7567 23 6 4.2315 -2.3977 0.1900 24 1 -0.4850 -0.8366 0.0752 25 1 4.1006 0.7283 0.0287 26 1 3.7459 0.2745 1.7176 27 1 6.2958 0.2002 0.6039 28 1 5.7845 -0.8430 1.9711 29 1 8.6082 -4.4231 0.8607 30 1 5.8264 -2.9660 -2.0443 31 1 4.1773 -2.9910 1.1027 32 1 3.9608 -3.0042 -0.6744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226379621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:49 Heat of formation + Delta-G solvation = 38.199271 kcal Electronic energy + Delta-G solvation = -19696.154523 eV Core-core repulsion = 16344.906349 eV Total energy + Delta-G solvation = -3351.248173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 345.982 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10407 -39.10874 -37.13495 -36.65585 -33.61104 -32.69321 -31.16841 -30.05573 -29.49188 -28.41319 -24.73314 -23.93898 -23.17697 -21.24912 -20.55279 -18.64594 -17.87119 -17.46102 -17.24165 -15.97342 -15.37455 -15.11214 -14.67564 -14.33037 -14.05564 -13.72576 -13.51674 -13.34323 -12.70707 -12.60005 -12.17697 -11.79094 -11.74995 -11.72411 -11.53211 -11.22320 -10.90984 -10.71677 -10.46847 -10.18911 -10.05292 -9.73350 -9.49032 -9.12048 -8.88341 -8.63629 -7.20775 -6.42773 -3.35640 0.34784 0.64697 1.06501 1.46853 2.79219 3.10022 3.30255 3.37372 3.61163 4.11365 4.15516 4.32817 4.50719 4.56778 4.71332 4.80002 5.00516 5.04246 5.14826 5.31936 5.45148 5.50894 5.61212 5.79819 5.93841 6.12838 6.24431 6.28753 6.53581 6.94585 7.23898 7.46542 8.20160 8.90588 9.39964 10.04489 11.07802 Molecular weight = 345.98amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003478 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.022329 B = 8048.510353 C = 9081.106140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.070 2.930 4 H -0.299 1.299 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.328 4.328 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.102 3.898 11 C -0.117 4.117 12 C 0.055 3.945 13 H 0.087 0.913 14 O -0.286 6.286 15 C 0.106 3.894 16 C 0.102 3.898 17 N -0.430 5.430 18 C 0.150 3.850 19 Cl -0.013 7.013 20 C -0.089 4.089 21 Br -0.008 7.008 22 C -0.131 4.131 23 C 0.121 3.879 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.182 0.818 30 H 0.165 0.835 31 H 0.040 0.960 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.063 -9.136 -5.745 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.219 4.219 3 Si 0.904 3.096 4 H -0.227 1.227 5 H -0.212 1.212 6 H -0.226 1.226 7 C -0.455 4.455 8 H 0.099 0.901 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.155 4.155 12 C -0.002 4.002 13 H 0.105 0.895 14 O -0.196 6.196 15 C 0.056 3.944 16 C -0.058 4.058 17 N -0.141 5.141 18 C -0.016 4.016 19 Cl 0.016 6.984 20 C -0.172 4.172 21 Br 0.077 6.923 22 C -0.158 4.158 23 C -0.005 4.005 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.199 0.801 30 H 0.182 0.818 31 H 0.058 0.942 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.272 -8.162 -6.155 21.815 hybrid contribution -0.390 -1.231 -0.118 1.297 sum 18.882 -9.394 -6.273 22.003 Atomic orbital electron populations 1.70885 1.05668 1.29414 1.50465 1.25820 0.96444 1.00912 0.98693 0.83847 0.73205 0.76297 0.76204 1.22732 1.21228 1.22600 1.20179 0.81225 0.96521 1.47545 0.90122 1.44657 1.06117 1.04469 1.78461 1.22148 0.89120 0.92129 0.98805 1.22670 0.97919 0.94728 1.00209 1.24177 0.87566 0.89223 0.99228 0.89472 1.86163 1.54206 1.44741 1.34534 1.20190 0.93716 0.92010 0.88531 1.22259 0.92919 0.91119 0.99537 1.67232 1.27006 1.19544 1.00319 1.21308 0.94397 0.94992 0.90910 1.98413 1.84065 1.59380 1.56586 1.22521 0.99240 1.00525 0.94927 1.96825 1.85958 1.98030 1.11516 1.21893 1.01956 0.99776 0.92222 1.22030 0.87219 0.91490 0.99804 0.92672 0.94365 0.92513 0.90292 0.89663 0.80143 0.81804 0.94207 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.32 13.70 55.49 0.76 -27.56 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 3 Si 1.07 25.55 24.51 -169.99 -4.17 21.39 16 4 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.28 -6.14 5.45 56.52 0.31 -5.83 16 6 H -0.30 -6.72 6.64 56.52 0.38 -6.35 16 7 C -0.33 -9.05 10.58 -15.06 -0.16 -9.21 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 9 N -0.61 -14.07 3.35 -169.93 -0.57 -14.64 16 10 C 0.10 2.06 4.65 -3.07 -0.01 2.04 16 11 C -0.12 -1.76 6.68 -24.90 -0.17 -1.93 16 12 C 0.05 0.82 2.82 -24.46 -0.07 0.75 16 13 H 0.09 1.22 6.27 -51.93 -0.33 0.90 16 14 O -0.29 -3.79 9.96 -19.50 -0.19 -3.98 16 15 C 0.11 1.29 6.70 -39.09 -0.26 1.03 16 16 C 0.10 1.12 11.14 -17.37 -0.19 0.93 16 17 N -0.43 -5.29 10.33 -10.22 -0.11 -5.40 16 18 C 0.15 1.85 7.27 -17.42 -0.13 1.72 16 19 Cl -0.01 -0.14 27.90 -51.86 -1.45 -1.59 16 20 C -0.09 -1.09 6.25 -39.36 -0.25 -1.33 16 21 Br -0.01 -0.10 32.55 -68.01 -2.21 -2.31 16 22 C -0.13 -1.62 8.81 -39.12 -0.34 -1.97 16 23 C 0.12 2.26 6.89 -2.41 -0.02 2.25 16 24 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 25 H 0.04 0.81 3.80 -51.93 -0.20 0.61 16 26 H 0.06 1.19 6.48 -51.93 -0.34 0.86 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.16 2.05 5.84 -52.49 -0.31 1.75 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -30.10 298.34 -8.09 -38.19 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.96 Total: -2.23 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.69 Total: -6.36 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.09 Total: -47.60 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.19 Total: -3.98 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.17 Total: 21.39 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.59 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.21 Total: -2.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.10 -8.09 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226379621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.393 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds