Wall clock time and date at job start Wed Apr 1 2020 04:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99982 * 2 1 4 4 H 1.48505 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47312 * 299.99551 * 3 2 1 6 6 H 1.48500 * 109.47112 * 59.99888 * 3 2 1 7 7 C 1.37878 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99980 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.47956 * 111.00069 * 170.00083 * 10 9 7 12 12 C 1.53939 * 86.18063 * 222.41375 * 11 10 9 13 13 O 1.42905 * 113.73287 * 138.07564 * 12 11 10 14 14 C 1.35715 * 116.99514 * 150.00415 * 13 12 11 15 15 N 1.32236 * 119.67917 * 359.72102 * 14 13 12 16 16 C 1.31953 * 121.67038 * 179.75140 * 15 14 13 17 17 C 1.38186 * 120.83353 * 0.53313 * 16 15 14 18 18 Cl 1.73606 * 120.36535 * 179.76286 * 17 16 15 19 19 C 1.38874 * 119.27030 * 359.73815 * 17 16 15 20 20 C 1.38486 * 118.46501 * 0.02562 * 19 17 16 21 21 Br 1.89101 * 120.44490 * 179.97438 * 20 19 17 22 22 C 1.47960 * 111.00269 * 70.64012 * 10 9 7 23 23 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47462 * 60.00252 * 9 7 2 25 25 H 1.09000 * 109.47361 * 299.99749 * 9 7 2 26 26 H 1.09000 * 113.75979 * 108.10287 * 11 10 9 27 27 H 1.08999 * 113.76272 * 336.73229 * 11 10 9 28 28 H 1.08998 * 113.73411 * 269.25823 * 12 11 10 29 29 H 1.08002 * 119.58422 * 180.24848 * 16 15 14 30 30 H 1.08002 * 120.76715 * 180.02562 * 19 17 16 31 31 H 1.08997 * 113.75772 * 23.26323 * 22 10 9 32 32 H 1.09007 * 113.75896 * 251.90161 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5160 -4.9026 0.2417 12 6 2.6919 -5.2407 1.1758 13 8 2.2951 -5.8735 2.3941 14 6 3.1796 -6.7351 2.9573 15 7 4.3436 -6.9556 2.3697 16 6 5.2345 -7.7813 2.8852 17 6 4.9753 -8.4584 4.0616 18 17 6.1537 -9.5466 4.7257 19 6 3.7619 -8.2585 4.7069 20 6 2.8507 -7.3817 4.1424 21 35 1.1813 -7.0682 4.9735 22 6 2.8972 -3.7207 1.3056 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5572 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 1.4581 -5.5409 -0.6400 27 1 0.5611 -4.7998 0.7572 28 1 3.5138 -5.7552 0.6779 29 1 6.1763 -7.9333 2.3789 30 1 3.5343 -8.7748 5.6278 31 1 2.3464 -3.2721 2.1322 32 1 3.9429 -3.4145 1.2739 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227145113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:36 Heat of formation + Delta-G solvation = 38.600020 kcal Electronic energy + Delta-G solvation = -19187.973470 eV Core-core repulsion = 15836.742674 eV Total energy + Delta-G solvation = -3351.230795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 345.982 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.08576 -39.43018 -37.41116 -36.66793 -33.63124 -32.89286 -31.38410 -29.76968 -28.99398 -25.83668 -25.38226 -24.06850 -23.44810 -21.58349 -19.50643 -18.81678 -17.43909 -16.83480 -16.46481 -15.88238 -15.25885 -15.24589 -14.47985 -14.20095 -14.11372 -13.88899 -13.10951 -13.00447 -12.51127 -12.22297 -12.07895 -11.89863 -11.72553 -11.64941 -11.53692 -10.96135 -10.67871 -10.56907 -10.33474 -10.21703 -9.99240 -9.86310 -9.74923 -9.19432 -8.60950 -8.53232 -7.92083 -6.08115 -4.10244 0.41133 0.61803 1.20202 1.69195 2.78700 3.11009 3.28710 3.36068 3.41155 3.85710 4.21981 4.38683 4.44813 4.60273 4.67633 4.82031 4.93714 5.28202 5.30224 5.40981 5.53566 5.83549 5.99690 6.07968 6.27602 6.35733 6.57220 7.07060 7.16018 7.31663 7.57290 7.81718 8.03673 8.35129 8.96934 9.54458 11.03150 Molecular weight = 345.98amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002952 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.646774 B = 9481.941628 C =10472.412633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.470 5.470 11 C 0.004 3.996 12 C 0.045 3.955 13 O -0.275 6.275 14 C 0.367 3.633 15 N -0.514 5.514 16 C 0.177 3.823 17 C -0.136 4.136 18 Cl -0.049 7.049 19 C -0.002 4.002 20 C -0.167 4.167 21 Br -0.008 7.008 22 C 0.014 3.986 23 H 0.262 0.738 24 H 0.035 0.965 25 H 0.002 0.998 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.077 0.923 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -21.315 11.981 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.195 5.195 11 C -0.125 4.125 12 C -0.011 4.011 13 O -0.179 6.179 14 C 0.186 3.814 15 N -0.238 5.238 16 C 0.019 3.981 17 C -0.167 4.167 18 Cl -0.021 7.021 19 C -0.030 4.030 20 C -0.250 4.250 21 Br 0.076 6.924 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.020 0.980 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.192 0.808 30 H 0.176 0.824 31 H 0.095 0.905 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.105 -20.491 11.018 24.326 hybrid contribution 0.229 0.404 1.225 1.310 sum 7.334 -20.087 12.244 24.641 Atomic orbital electron populations 1.69970 1.06076 1.26811 1.50727 1.24995 0.94891 0.99428 0.95216 0.86423 0.80087 0.83256 0.77575 1.19615 1.20912 1.21024 1.21111 0.93500 0.89847 1.50541 0.91869 1.20238 0.90819 0.88367 0.96895 1.68612 1.21454 1.01966 1.27509 1.24254 0.96166 0.94954 0.97125 1.25174 1.00223 0.93568 0.82140 1.86541 1.38908 1.52373 1.40077 1.19637 0.86905 0.86970 0.87930 1.67669 1.02430 1.20009 1.33723 1.22636 0.97465 0.87890 0.90155 1.21724 0.93674 1.02027 0.99225 1.98383 1.56400 1.62099 1.85182 1.21305 0.89835 0.93142 0.98670 1.21754 0.97757 1.06562 0.98904 1.96797 1.21157 1.95802 1.78618 1.24177 1.01657 0.91441 0.94189 0.92869 0.94647 0.98014 0.89315 0.90716 0.85997 0.80758 0.82418 0.90494 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.42 8.84 -34.44 -0.30 -14.73 16 8 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 9 C 0.16 4.24 4.58 -4.98 -0.02 4.22 16 10 N -0.47 -10.17 6.25 -239.98 -1.50 -11.67 16 11 C 0.00 0.07 7.81 -2.77 -0.02 0.05 16 12 C 0.05 0.73 4.37 -25.80 -0.11 0.62 16 13 O -0.28 -4.30 9.49 -18.85 -0.18 -4.48 16 14 C 0.37 5.00 7.48 -17.11 -0.13 4.87 16 15 N -0.51 -6.49 8.59 -13.28 -0.11 -6.60 16 16 C 0.18 1.70 10.98 -17.52 -0.19 1.51 16 17 C -0.14 -1.21 6.34 -39.37 -0.25 -1.46 16 18 Cl -0.05 -0.37 28.99 -51.86 -1.50 -1.88 16 19 C 0.00 -0.02 9.74 -39.25 -0.38 -0.40 16 20 C -0.17 -1.96 6.26 -39.23 -0.25 -2.20 16 21 Br -0.01 -0.09 33.20 -68.01 -2.26 -2.35 16 22 C 0.01 0.28 7.29 -2.77 -0.02 0.26 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.00 0.06 7.69 -51.93 -0.40 -0.34 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 28 H 0.12 1.89 6.87 -51.93 -0.36 1.53 16 29 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.08 1.59 7.78 -51.93 -0.40 1.19 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -30.07 316.58 -10.07 -40.14 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.22 Total: -2.92 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.78 Total: -5.76 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.88 Total: -44.16 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.18 Total: -4.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.07 -10.07 -40.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227145113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.738 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds