Wall clock time and date at job start Wed Apr 1 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99666 * 2 1 4 4 C 1.46906 * 111.00005 * 123.94763 * 2 1 3 5 5 H 1.09000 * 109.47120 * 300.36105 * 4 2 1 6 6 C 1.50702 * 109.47123 * 60.36041 * 4 2 1 7 7 O 1.21280 * 119.99926 * 27.41210 * 6 4 2 8 8 N 1.34770 * 119.99840 * 207.41040 * 6 4 2 9 9 C 1.46503 * 119.99968 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47509 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.43770 * 303.91555 * 10 9 8 12 12 C 1.54266 * 110.48671 * 66.45482 * 10 9 8 13 13 C 1.53870 * 106.60434 * 142.28755 * 12 10 9 14 14 C 1.54266 * 106.59523 * 0.02562 * 13 12 10 15 15 H 1.08994 * 110.48880 * 95.19628 * 14 13 12 16 16 N 1.46501 * 110.48557 * 217.71198 * 14 13 12 17 17 C 1.36942 * 119.99752 * 273.54178 * 16 14 13 18 18 H 1.07998 * 120.00207 * 0.02562 * 17 16 14 19 19 C 1.38808 * 119.99986 * 179.97438 * 17 16 14 20 20 N 1.31629 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47169 * 89.99579 * 21 19 17 23 23 H 1.48494 * 109.47412 * 209.99764 * 21 19 17 24 24 H 1.48497 * 109.46890 * 329.99906 * 21 19 17 25 25 C 1.54888 * 104.19606 * 336.38624 * 14 13 12 26 26 C 1.50693 * 109.46973 * 180.36136 * 4 2 1 27 27 C 1.38242 * 120.00129 * 313.22820 * 26 4 2 28 28 C 1.38237 * 119.99809 * 179.81364 * 27 26 4 29 29 C 1.38239 * 119.99883 * 0.41759 * 28 27 26 30 30 C 1.38231 * 120.00251 * 359.81291 * 29 28 27 31 31 C 1.38236 * 120.00114 * 0.02562 * 30 29 28 32 32 H 1.09006 * 109.47230 * 296.04716 * 1 2 3 33 33 H 1.08997 * 109.47175 * 56.05231 * 1 2 3 34 34 H 1.09009 * 109.46671 * 176.05079 * 1 2 3 35 35 H 1.09005 * 109.47201 * 189.33375 * 3 2 1 36 36 H 1.08999 * 109.46930 * 309.33007 * 3 2 1 37 37 H 1.08994 * 109.48043 * 69.33408 * 3 2 1 38 38 H 0.96996 * 120.00848 * 359.97438 * 8 6 4 39 39 H 1.09007 * 109.47295 * 59.99335 * 9 8 6 40 40 H 1.09001 * 109.47316 * 300.00185 * 9 8 6 41 41 H 1.09010 * 110.03167 * 23.00113 * 12 10 9 42 42 H 1.08998 * 110.07215 * 261.60229 * 12 10 9 43 43 H 1.08995 * 110.03819 * 240.71844 * 13 12 10 44 44 H 1.09005 * 110.03036 * 119.28109 * 13 12 10 45 45 H 0.97000 * 119.99966 * 93.81843 * 16 14 13 46 46 H 0.96996 * 119.99711 * 179.97438 * 20 19 17 47 47 H 1.09000 * 110.76129 * 156.26101 * 25 14 13 48 48 H 1.08997 * 110.75950 * 279.62878 * 25 14 13 49 49 H 1.07992 * 119.99450 * 0.02562 * 27 26 4 50 50 H 1.07996 * 119.99941 * 180.21471 * 28 27 26 51 51 H 1.08004 * 119.99490 * 179.79527 * 29 28 27 52 52 H 1.08000 * 119.99984 * 179.97438 * 30 29 28 53 53 H 1.08002 * 120.00149 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9955 -0.7659 1.1377 5 1 1.6407 -0.3237 2.0687 6 6 1.5195 -2.1928 1.0460 7 8 1.2618 -2.6778 -0.0353 8 7 1.3802 -2.9299 2.1656 9 6 0.9181 -4.3173 2.0765 10 6 0.8484 -4.9229 3.4797 11 1 1.8151 -4.8435 3.9770 12 6 -0.2467 -4.2271 4.3143 13 6 -0.9107 -5.3214 5.1682 14 6 -0.1955 -6.6441 4.8232 15 1 0.6005 -6.8455 5.5400 16 7 -1.1528 -7.7528 4.7967 17 6 -1.4601 -8.4198 5.9526 18 1 -0.9971 -8.1283 6.8837 19 6 -2.3674 -9.4700 5.9276 20 7 -2.9321 -9.8249 4.7928 21 14 -2.7872 -10.3794 7.5043 22 1 -3.9449 -9.7218 8.1619 23 1 -3.1331 -11.7880 7.1862 24 1 -1.6172 -10.3513 8.4183 25 6 0.3918 -6.4011 3.4108 26 6 3.5018 -0.7360 1.1093 27 6 4.1760 -0.9856 -0.0714 28 6 5.5578 -0.9544 -0.0982 29 6 6.2655 -0.6820 1.0576 30 6 5.5915 -0.4371 2.2393 31 6 4.2097 -0.4650 2.2655 32 1 -0.3634 0.4513 0.9233 33 1 -0.3633 0.5739 -0.8525 34 1 -0.3633 -1.0253 -0.0708 35 1 3.0723 1.3473 -0.1667 36 1 1.5174 1.9440 -0.7949 37 1 1.7870 1.8407 0.9614 38 1 1.5867 -2.5423 3.0305 39 1 1.6138 -4.8936 1.4665 40 1 -0.0715 -4.3420 1.6201 41 1 -0.9842 -3.7691 3.6550 42 1 0.1989 -3.4695 4.9588 43 1 -1.9703 -5.3947 4.9234 44 1 -0.7865 -5.0954 6.2273 45 1 -1.5658 -8.0170 3.9598 46 1 -3.5659 -10.5590 4.7753 47 1 1.2407 -7.0596 3.2268 48 1 -0.3737 -6.5334 2.6461 49 1 3.6231 -1.2016 -0.9736 50 1 6.0844 -1.1460 -1.0214 51 1 7.3452 -0.6609 1.0373 52 1 6.1445 -0.2247 3.1424 53 1 3.6830 -0.2741 3.1888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689022128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:36 Heat of formation + Delta-G solvation = -19.199634 kcal Electronic energy + Delta-G solvation = -30172.367329 eV Core-core repulsion = 26235.832564 eV Total energy + Delta-G solvation = -3936.534766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52994 -39.98393 -39.30810 -37.69482 -36.27963 -34.99426 -33.01501 -32.43576 -31.75493 -30.45950 -29.14086 -28.49634 -28.01787 -25.79258 -24.77333 -23.78798 -23.28594 -22.62500 -21.56633 -20.78768 -20.53882 -19.13830 -18.32866 -17.86348 -17.45402 -16.96659 -16.69348 -16.53386 -16.18738 -15.77381 -15.69244 -15.33442 -15.25855 -15.13680 -15.07541 -14.32987 -14.25043 -14.13789 -14.03238 -13.69337 -13.55390 -13.35068 -13.22400 -13.14938 -13.00551 -12.90625 -12.67354 -12.53244 -12.37154 -12.13694 -11.95685 -11.92849 -11.88812 -11.77000 -11.65701 -11.55615 -11.20446 -10.94544 -10.90631 -10.08595 -9.79111 -9.62844 -9.35663 -8.98289 -7.93660 -5.21875 0.35098 0.53325 1.46642 1.48380 1.56756 1.61013 2.03649 2.56719 2.77892 3.10038 3.38557 3.60808 3.67144 3.75383 3.79520 3.88318 3.91596 4.15233 4.21218 4.27133 4.29795 4.33481 4.39072 4.40931 4.49865 4.60059 4.61074 4.65605 4.66236 4.67858 4.74794 4.77793 4.81252 4.90371 4.98871 5.01774 5.05791 5.08497 5.11125 5.19711 5.22791 5.37765 5.45225 5.50242 5.55969 5.56330 5.61027 5.65941 5.66728 5.88789 6.00762 6.11764 6.29274 6.57411 7.25578 7.34195 8.13102 8.34495 9.30091 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.001945 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.918524 B =14395.522488 C =15067.292154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.030 3.970 4 C 0.117 3.883 5 H 0.089 0.911 6 C 0.518 3.482 7 O -0.562 6.562 8 N -0.712 5.712 9 C 0.138 3.862 10 C -0.083 4.083 11 H 0.102 0.898 12 C -0.104 4.104 13 C -0.139 4.139 14 C 0.165 3.835 15 H 0.050 0.950 16 N -0.738 5.738 17 C -0.236 4.236 18 H 0.076 0.924 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.115 4.115 26 C -0.093 4.093 27 C -0.100 4.100 28 C -0.135 4.135 29 C -0.118 4.118 30 C -0.124 4.124 31 C -0.110 4.110 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.414 0.586 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.109 0.891 50 H 0.131 0.869 51 H 0.141 0.859 52 H 0.147 0.853 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.203 28.171 -5.989 34.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.118 4.118 4 C 0.006 3.994 5 H 0.106 0.894 6 C 0.303 3.697 7 O -0.440 6.440 8 N -0.365 5.365 9 C 0.014 3.986 10 C -0.102 4.102 11 H 0.120 0.880 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.056 3.944 15 H 0.069 0.931 16 N -0.377 5.377 17 C -0.368 4.368 18 H 0.094 0.906 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.801 3.199 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.193 1.193 25 C -0.154 4.154 26 C -0.094 4.094 27 C -0.118 4.118 28 C -0.153 4.153 29 C -0.136 4.136 30 C -0.142 4.142 31 C -0.128 4.128 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.127 0.873 50 H 0.149 0.851 51 H 0.159 0.841 52 H 0.165 0.835 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.166 27.534 -7.004 33.722 hybrid contribution -1.210 -0.693 1.176 1.825 sum 16.955 26.841 -5.828 32.278 Atomic orbital electron populations 1.22429 0.86333 1.02017 1.01668 1.61665 1.08575 1.14800 1.41429 1.22414 1.01141 0.86803 1.01399 1.20461 0.92931 0.90982 0.95069 0.89358 1.20699 0.76743 0.88334 0.83891 1.90698 1.50692 1.73324 1.29254 1.45876 1.67729 1.13257 1.09637 1.21233 0.99042 0.81315 0.96994 1.22021 1.00328 0.93844 0.94038 0.87960 1.22111 0.97068 0.97194 0.97853 1.22739 0.99302 0.96448 0.99409 1.21331 0.90639 0.86888 0.95521 0.93149 1.42672 1.50555 1.36954 1.07489 1.19643 1.18636 1.09546 0.88965 0.90582 1.25584 1.00788 1.00970 0.99964 1.69830 1.34073 1.32025 1.26398 0.85150 0.78151 0.77277 0.79278 1.21542 1.22413 1.19257 1.22600 1.00073 0.95881 0.96842 1.19362 0.92228 1.03035 0.94798 1.21065 0.94659 0.98179 0.97922 1.21390 0.93777 1.00525 0.99569 1.21519 1.01111 0.98321 0.92656 1.21433 0.94143 0.99675 0.98946 1.21296 0.94848 0.99204 0.97499 0.94225 0.89936 0.93077 0.91363 0.90224 0.94290 0.74948 0.92437 0.92933 0.92259 0.89354 0.94475 0.92655 0.79742 0.94165 0.91336 0.92608 0.87256 0.85101 0.84074 0.83529 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.22 127.69 1.18 1.59 16 2 N -0.54 -9.91 4.14 -932.20 -3.86 -13.78 16 3 C 0.03 0.39 9.11 127.69 1.16 1.56 16 4 C 0.12 2.01 2.06 43.42 0.09 2.10 16 5 H 0.09 1.08 7.94 -2.39 -0.02 1.06 16 6 C 0.52 11.96 5.91 87.66 0.52 12.48 16 7 O -0.56 -18.16 15.55 -3.03 -0.05 -18.21 16 8 N -0.71 -13.46 5.39 -463.06 -2.50 -15.96 16 9 C 0.14 3.21 4.99 86.38 0.43 3.64 16 10 C -0.08 -1.87 2.93 -9.73 -0.03 -1.89 16 11 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 12 C -0.10 -2.40 6.05 31.32 0.19 -2.21 16 13 C -0.14 -4.60 6.53 31.32 0.20 -4.39 16 14 C 0.16 6.30 3.50 46.07 0.16 6.46 16 15 H 0.05 1.93 8.11 -2.39 -0.02 1.91 16 16 N -0.74 -37.46 5.16 -317.87 -1.64 -39.10 16 17 C -0.24 -13.15 9.97 84.03 0.84 -12.31 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 20 N -0.97 -60.50 13.06 21.65 0.28 -60.22 16 21 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C -0.12 -3.59 5.92 31.88 0.19 -3.40 16 26 C -0.09 -1.53 3.64 -19.86 -0.07 -1.60 16 27 C -0.10 -1.91 8.38 22.27 0.19 -1.72 16 28 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 29 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 30 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 31 C -0.11 -1.31 9.67 22.27 0.22 -1.10 16 32 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 34 H 0.05 1.19 6.40 -2.38 -0.02 1.18 16 35 H 0.07 0.97 6.56 -2.38 -0.02 0.95 16 36 H 0.08 0.91 8.03 -2.39 -0.02 0.89 16 37 H 0.04 0.42 8.13 -2.39 -0.02 0.40 16 38 H 0.41 5.18 8.32 -92.71 -0.77 4.41 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.43 8.05 -2.39 -0.02 1.41 16 41 H 0.06 1.40 7.77 -2.38 -0.02 1.38 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.44 8.04 -2.39 -0.02 1.42 16 44 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.37 20.47 7.72 -92.71 -0.72 19.75 16 46 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.06 1.91 7.94 -2.39 -0.02 1.89 16 49 H 0.11 2.57 7.93 -2.91 -0.02 2.54 16 50 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 51 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 52 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 53 H 0.15 0.97 7.99 -2.91 -0.02 0.95 16 Total: -1.00 -73.46 423.85 0.06 -73.40 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.60 Total: 34.61 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 6.40 Total: -9.26 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -7.72 Total: -129.06 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.05 Total: -18.21 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.46 0.06 -73.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689022128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.200 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds