Wall clock time and date at job start Wed Apr 1 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00235 * 2 1 4 4 C 1.46899 * 110.99712 * 123.95225 * 2 1 3 5 5 C 1.52999 * 109.47059 * 169.99889 * 4 2 1 6 6 C 1.50708 * 109.47076 * 179.97438 * 5 4 2 7 7 C 1.38361 * 119.85196 * 270.25154 * 6 5 4 8 8 C 1.37955 * 120.14138 * 180.25817 * 7 6 5 9 9 C 1.39575 * 119.85263 * 359.49245 * 8 7 6 10 10 C 1.47848 * 120.14487 * 180.27853 * 9 8 7 11 11 O 1.21550 * 119.99883 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00150 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47072 * 179.97438 * 13 12 10 15 15 H 1.09005 * 109.46951 * 295.00034 * 14 13 12 16 16 N 1.46502 * 109.47095 * 55.00067 * 14 13 12 17 17 C 1.36938 * 119.99931 * 205.00130 * 16 14 13 18 18 H 1.08004 * 119.99747 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00100 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99782 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99956 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47376 * 89.99753 * 21 19 17 23 23 H 1.48498 * 109.46739 * 209.99478 * 21 19 17 24 24 H 1.48496 * 109.47292 * 329.99480 * 21 19 17 25 25 C 1.52997 * 109.47322 * 175.00228 * 14 13 12 26 26 C 1.53001 * 117.49747 * 248.74980 * 25 14 13 27 27 C 1.52998 * 117.50300 * 180.08573 * 25 14 13 28 28 C 1.39579 * 119.71401 * 0.25207 * 9 8 7 29 29 C 1.37958 * 119.84937 * 0.02562 * 28 9 8 30 30 H 1.08997 * 109.47330 * 296.04854 * 1 2 3 31 31 H 1.09004 * 109.46959 * 56.05200 * 1 2 3 32 32 H 1.08998 * 109.46985 * 176.04615 * 1 2 3 33 33 H 1.09001 * 109.47171 * 183.95728 * 3 2 1 34 34 H 1.09006 * 109.47129 * 303.94933 * 3 2 1 35 35 H 1.08997 * 109.47399 * 63.94888 * 3 2 1 36 36 H 1.09004 * 109.47304 * 49.99879 * 4 2 1 37 37 H 1.08994 * 109.47417 * 289.99917 * 4 2 1 38 38 H 1.08997 * 109.47366 * 60.00108 * 5 4 2 39 39 H 1.09000 * 109.47611 * 299.99900 * 5 4 2 40 40 H 1.07998 * 119.92846 * 0.02562 * 7 6 5 41 41 H 1.08002 * 120.07573 * 179.77464 * 8 7 6 42 42 H 0.96996 * 119.99601 * 359.97438 * 12 10 9 43 43 H 1.08997 * 109.47252 * 300.00049 * 13 12 10 44 44 H 1.09007 * 109.46893 * 60.00137 * 13 12 10 45 45 H 0.96996 * 119.99873 * 25.00065 * 16 14 13 46 46 H 0.96993 * 119.99947 * 180.02562 * 20 19 17 47 47 H 1.09002 * 115.54973 * 34.41173 * 25 14 13 48 48 H 1.08997 * 117.50159 * 359.97438 * 26 25 14 49 49 H 1.09004 * 117.49702 * 145.01992 * 26 25 14 50 50 H 1.08998 * 117.50517 * 214.97803 * 27 25 14 51 51 H 1.09003 * 117.49393 * 0.02562 * 27 25 14 52 52 H 1.07997 * 120.07575 * 180.02562 * 28 9 8 53 53 H 1.08006 * 119.92205 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0445 -1.7407 2.1378 7 6 4.4810 -1.0775 3.2710 8 6 4.9815 -1.7901 4.3410 9 6 5.0370 -3.1835 4.2829 10 6 5.5664 -3.9539 5.4283 11 8 5.9549 -3.3739 6.4233 12 7 5.6192 -5.2994 5.3688 13 6 6.1443 -6.0627 6.5037 14 6 6.0933 -7.5573 6.1803 15 1 5.0546 -7.8714 6.0773 16 7 6.8066 -7.8102 4.9260 17 6 6.4917 -8.9065 4.1683 18 1 5.7177 -9.5849 4.4956 19 6 7.1680 -9.1465 2.9800 20 7 8.1116 -8.3200 2.5814 21 14 6.7389 -10.6423 1.9468 22 1 5.6715 -10.2852 0.9781 23 1 7.9449 -11.0968 1.2091 24 1 6.2592 -11.7341 2.8317 25 6 6.7550 -8.3467 7.3115 26 6 8.0832 -9.0416 7.0050 27 6 6.8068 -9.8696 7.1740 28 6 4.5901 -3.8466 3.1388 29 6 4.0972 -3.1217 2.0735 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3431 -0.0709 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8723 0.9232 36 1 1.5089 -1.7406 1.1757 37 1 1.7975 -0.2248 2.0628 38 1 3.9909 0.0192 0.9324 39 1 3.7024 -1.4966 0.0453 40 1 4.4334 0.0005 3.3165 41 1 5.3253 -1.2712 5.2236 42 1 5.3095 -5.7622 4.5747 43 1 7.1759 -5.7669 6.6944 44 1 5.5393 -5.8618 7.3878 45 1 7.5020 -7.2011 4.6322 46 1 8.5839 -8.4874 1.7509 47 1 6.6211 -7.9361 8.3123 48 1 8.4853 -8.9367 5.9974 49 1 8.8229 -9.0885 7.8043 50 1 6.7074 -10.4610 8.0842 51 1 6.3698 -10.3091 6.2773 52 1 4.6300 -4.9246 3.0877 53 1 3.7515 -3.6336 1.1875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690168614.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:08 Heat of formation + Delta-G solvation = 11.768153 kcal Electronic energy + Delta-G solvation = -29666.745771 eV Core-core repulsion = 25731.553869 eV Total energy + Delta-G solvation = -3935.191902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27326 -39.89087 -39.08044 -38.26702 -35.97346 -35.08938 -34.20390 -32.66128 -31.88353 -30.46576 -29.33130 -28.44580 -26.23467 -25.46032 -24.32740 -23.64433 -23.14445 -22.79940 -21.88121 -21.21943 -20.56586 -19.38998 -18.76315 -17.36724 -16.97064 -16.79607 -16.50579 -16.30997 -16.17899 -15.96606 -15.91150 -15.63796 -15.44027 -15.28556 -14.93988 -14.56831 -14.51401 -14.18728 -13.96741 -13.87763 -13.60715 -13.21926 -12.95816 -12.86001 -12.84018 -12.68403 -12.66284 -12.59054 -12.44528 -12.18632 -12.13666 -12.09914 -11.94943 -11.64356 -11.58652 -11.12894 -11.02606 -10.80765 -10.61824 -10.13739 -9.96228 -9.67945 -9.30515 -8.99072 -7.87292 -5.15236 -0.17094 0.40927 1.49527 1.51759 1.57845 1.82848 2.22267 2.59050 2.82977 3.04299 3.13497 3.47254 3.70831 3.79363 3.87249 3.97057 3.98892 4.01529 4.12042 4.22033 4.27590 4.32667 4.33330 4.41161 4.49124 4.49827 4.51650 4.58494 4.62306 4.66134 4.72289 4.75499 4.83781 4.92134 4.97032 4.97173 5.02739 5.04411 5.09080 5.17959 5.20175 5.23845 5.33407 5.38196 5.42323 5.53107 5.59367 5.67324 5.68788 5.92564 6.06901 6.10690 6.32187 6.54991 7.17574 7.40778 8.10735 8.36759 9.34942 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.002350 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.131581 B =11910.871419 C =13671.056716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.562 5.562 3 C 0.018 3.982 4 C 0.064 3.936 5 C -0.073 4.073 6 C -0.052 4.052 7 C -0.122 4.122 8 C -0.069 4.069 9 C -0.155 4.155 10 C 0.551 3.449 11 O -0.585 6.585 12 N -0.705 5.705 13 C 0.127 3.873 14 C 0.192 3.808 15 H 0.062 0.938 16 N -0.720 5.720 17 C -0.218 4.218 18 H 0.076 0.924 19 C -0.065 4.065 20 N -0.963 5.963 21 Si 0.956 3.044 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.274 1.274 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.169 4.169 28 C -0.084 4.084 29 C -0.124 4.124 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.410 0.590 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.374 0.626 46 H 0.247 0.753 47 H 0.115 0.885 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.079 0.921 52 H 0.126 0.874 53 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 16.296 -1.099 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.286 5.286 3 C -0.130 4.130 4 C -0.064 4.064 5 C -0.110 4.110 6 C -0.053 4.053 7 C -0.140 4.140 8 C -0.088 4.088 9 C -0.158 4.158 10 C 0.340 3.660 11 O -0.468 6.468 12 N -0.356 5.356 13 C 0.003 3.997 14 C 0.083 3.917 15 H 0.079 0.921 16 N -0.360 5.360 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.258 4.258 20 N -0.614 5.614 21 Si 0.787 3.213 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.199 1.199 25 C -0.190 4.190 26 C -0.211 4.211 27 C -0.206 4.206 28 C -0.103 4.103 29 C -0.142 4.142 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.247 0.753 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.206 0.794 46 H 0.056 0.944 47 H 0.133 0.867 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.097 0.903 52 H 0.144 0.856 53 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.383 16.266 -0.887 21.083 hybrid contribution 0.205 -0.815 -0.295 0.891 sum -13.178 15.451 -1.182 20.342 Atomic orbital electron populations 1.22417 0.86513 1.02653 1.00931 1.61988 1.08697 1.14768 1.43119 1.22507 1.01469 0.88131 1.00900 1.22055 0.94490 0.98492 0.91382 1.20616 0.94770 1.00337 0.95287 1.20246 0.95837 0.93605 0.95596 1.21236 0.99388 1.01116 0.92283 1.21321 0.96060 0.92098 0.99274 1.19938 1.05888 0.95039 0.94947 1.18677 0.77843 0.82380 0.87111 1.90688 1.51033 1.70593 1.34469 1.45910 1.63344 1.05832 1.20507 1.21513 0.98703 0.90854 0.88672 1.20131 0.95445 0.90602 0.85505 0.92053 1.42527 1.43420 1.28844 1.21209 1.19400 1.14309 1.01277 0.99942 0.90580 1.25300 0.99503 1.01050 0.99942 1.69800 1.28023 1.39591 1.24012 0.85395 0.76226 0.80509 0.79145 1.21619 1.23302 1.19902 1.23050 1.01297 0.94638 1.00022 1.22780 0.91045 1.05220 1.02047 1.22850 1.02118 0.93300 1.02373 1.21465 0.95899 1.00372 0.92563 1.21239 1.00177 0.93984 0.98829 0.95513 0.90453 0.91256 0.90594 0.90712 0.95408 0.90851 0.94559 0.89445 0.89733 0.82970 0.85176 0.75255 0.92954 0.90058 0.79407 0.94420 0.86669 0.90408 0.89121 0.88013 0.90254 0.85626 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.49 16 2 N -0.56 -7.94 5.02 -948.86 -4.76 -12.70 16 3 C 0.02 0.20 9.32 127.69 1.19 1.39 16 4 C 0.06 0.92 4.94 86.30 0.43 1.35 16 5 C -0.07 -1.07 5.26 29.85 0.16 -0.91 16 6 C -0.05 -1.01 5.14 -19.80 -0.10 -1.11 16 7 C -0.12 -2.46 9.68 22.23 0.22 -2.24 16 8 C -0.07 -1.80 9.60 22.53 0.22 -1.58 16 9 C -0.16 -4.70 5.87 -20.09 -0.12 -4.82 16 10 C 0.55 19.62 7.77 86.79 0.67 20.29 16 11 O -0.59 -23.88 16.35 -3.87 -0.06 -23.94 16 12 N -0.71 -24.21 5.34 -465.97 -2.49 -26.70 16 13 C 0.13 4.29 5.22 86.38 0.45 4.74 16 14 C 0.19 6.88 2.86 44.99 0.13 7.01 16 15 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 16 N -0.72 -31.94 3.08 -322.94 -0.99 -32.93 16 17 C -0.22 -10.71 8.15 84.03 0.69 -10.02 16 18 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 19 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 20 N -0.96 -55.53 13.06 21.65 0.28 -55.25 16 21 Si 0.96 43.96 29.55 68.60 2.03 45.99 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.31 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.17 -5.55 5.70 -10.80 -0.06 -5.61 16 26 C -0.17 -6.33 9.74 30.62 0.30 -6.03 16 27 C -0.17 -5.69 9.87 30.62 0.30 -5.39 16 28 C -0.08 -2.31 9.54 22.53 0.21 -2.09 16 29 C -0.12 -2.80 9.68 22.23 0.22 -2.58 16 30 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 32 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 33 H 0.08 0.78 6.47 -2.39 -0.02 0.76 16 34 H 0.07 0.71 8.12 -2.38 -0.02 0.69 16 35 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.07 1.13 8.06 -2.39 -0.02 1.11 16 37 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 38 H 0.09 1.09 6.49 -2.39 -0.02 1.07 16 39 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.13 3.43 7.65 -2.91 -0.02 3.41 16 42 H 0.41 14.07 6.17 -92.71 -0.57 13.50 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 47 H 0.12 3.19 8.11 -2.39 -0.02 3.17 16 48 H 0.08 3.54 6.68 -2.39 -0.02 3.52 16 49 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 50 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.08 3.06 6.22 -2.39 -0.01 3.04 16 52 H 0.13 3.53 6.41 -2.91 -0.02 3.52 16 53 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -62.76 426.04 0.20 -62.56 By element: Atomic # 1 Polarization: 52.48 SS G_CDS: -0.39 Total: 52.09 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.58 Total: -9.12 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -7.96 Total: -127.59 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.76 0.20 -62.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690168614.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.325 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds