Wall clock time and date at job start Wed Apr 1 2020 03:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47202 * 2 1 4 4 C 1.50706 * 109.46827 * 119.99599 * 2 1 3 5 5 H 1.07996 * 119.99632 * 120.00453 * 4 2 1 6 6 C 1.37872 * 120.00113 * 300.00015 * 4 2 1 7 7 N 1.31517 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46766 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46896 * 119.99892 * 8 6 4 11 11 H 1.48497 * 109.47195 * 240.00091 * 8 6 4 12 12 N 1.46896 * 109.47434 * 239.99880 * 2 1 3 13 13 C 1.46908 * 110.99702 * 306.04642 * 12 2 1 14 14 C 1.38578 * 110.99940 * 69.99608 * 12 2 1 15 15 N 1.31214 * 126.47353 * 354.35122 * 14 12 2 16 16 N 1.28534 * 109.85909 * 180.02562 * 15 14 12 17 17 C 1.30293 * 110.05144 * 359.71297 * 16 15 14 18 18 C 1.50700 * 126.34667 * 180.31692 * 17 16 15 19 19 C 1.52999 * 117.50046 * 8.89819 * 18 17 16 20 20 C 1.53003 * 117.49911 * 300.24292 * 18 17 16 21 21 N 1.36452 * 126.47286 * 174.38295 * 14 12 2 22 22 C 1.46509 * 127.13439 * 359.97438 * 21 14 12 23 23 C 1.53000 * 109.47331 * 95.93381 * 22 21 14 24 24 N 1.46891 * 109.46976 * 185.89481 * 23 22 21 25 25 C 1.46844 * 111.00385 * 306.26944 * 24 23 22 26 26 C 1.50141 * 110.27610 * 287.54179 * 25 24 23 27 27 C 1.29821 * 123.28250 * 342.96639 * 26 25 24 28 28 C 1.50304 * 122.89577 * 0.32900 * 27 26 25 29 29 C 1.47248 * 111.00133 * 183.34197 * 24 23 22 30 30 H 1.09002 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47192 * 300.00100 * 1 2 3 32 32 H 1.09004 * 109.47158 * 60.00319 * 1 2 3 33 33 H 0.97006 * 119.99695 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46970 * 190.11105 * 13 12 2 35 35 H 1.08994 * 109.47262 * 310.11059 * 13 12 2 36 36 H 1.08996 * 109.46887 * 70.11187 * 13 12 2 37 37 H 1.08995 * 115.55409 * 154.57262 * 18 17 16 38 38 H 1.09000 * 117.49928 * 0.02562 * 19 18 17 39 39 H 1.08999 * 117.49941 * 145.02115 * 19 18 17 40 40 H 1.09001 * 117.49841 * 214.97980 * 20 18 17 41 41 H 1.09004 * 117.49519 * 359.97438 * 20 18 17 42 42 H 1.09000 * 109.47156 * 335.92714 * 22 21 14 43 43 H 1.08997 * 109.46803 * 215.93100 * 22 21 14 44 44 H 1.08998 * 109.46879 * 65.89363 * 23 22 21 45 45 H 1.09004 * 109.46795 * 305.89546 * 23 22 21 46 46 H 1.09004 * 109.33039 * 47.78776 * 25 24 23 47 47 H 1.08995 * 109.33890 * 167.28771 * 25 24 23 48 48 H 1.07996 * 118.35908 * 162.94720 * 26 25 24 49 49 H 1.08000 * 118.55144 * 180.35365 * 27 26 25 50 50 H 1.09000 * 109.44749 * 223.45470 * 28 27 26 51 51 H 1.09004 * 109.41485 * 103.60616 * 28 27 26 52 52 H 1.08993 * 109.63781 * 174.28139 * 29 24 23 53 53 H 1.09007 * 109.62994 * 294.89161 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 3.1462 -2.2868 3.6039 10 1 3.1465 -0.1872 4.8166 11 1 1.1659 -1.5865 4.8162 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7680 0.0524 -2.3405 15 7 1.0862 1.1716 -2.4068 16 7 1.0502 1.5896 -3.6217 17 6 1.7067 0.7720 -4.3951 18 6 1.9029 0.9133 -5.8826 19 6 1.4606 2.2261 -6.5320 20 6 0.6501 0.9478 -6.7603 21 7 2.1820 -0.2396 -3.6075 22 6 2.9764 -1.3942 -4.0343 23 6 2.0437 -2.4943 -4.5450 24 7 2.8265 -3.7018 -4.8403 25 6 3.9363 -3.3995 -5.7531 26 6 3.4159 -3.1430 -7.1379 27 6 2.2284 -3.4928 -7.5288 28 6 1.2446 -4.1875 -6.6296 29 6 1.9729 -4.7578 -5.4099 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7080 1.1610 3.4844 34 1 1.9431 -2.5912 -2.0954 35 1 1.5510 -2.5603 -0.3595 36 1 0.3746 -1.9516 -1.5485 37 1 2.7884 0.4244 -6.2885 38 1 1.0280 2.9878 -5.8833 39 1 2.0549 2.6007 -7.3653 40 1 0.7117 0.4819 -7.7438 41 1 -0.3160 0.8679 -6.2618 42 1 3.5536 -1.7704 -3.1897 43 1 3.6547 -1.0934 -4.8327 44 1 1.5438 -2.1546 -5.4520 45 1 1.2985 -2.7217 -3.7827 46 1 4.4658 -2.5157 -5.3970 47 1 4.6245 -4.2443 -5.7768 48 1 4.0616 -2.6422 -7.8440 49 1 1.9346 -3.2754 -8.5451 50 1 0.7630 -4.9983 -7.1762 51 1 0.4888 -3.4745 -6.3000 52 1 2.5899 -5.6033 -5.7139 53 1 1.2444 -5.0808 -4.6661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001741800577.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:06 Heat of formation + Delta-G solvation = 159.123860 kcal Electronic energy + Delta-G solvation = -32288.878900 eV Core-core repulsion = 28392.369572 eV Total energy + Delta-G solvation = -3896.509327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.222 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.51762 -40.02149 -37.61441 -36.77099 -35.33133 -32.97696 -32.67454 -31.34877 -29.42992 -29.18426 -28.57000 -25.59597 -25.23305 -25.12339 -23.73801 -23.45839 -22.46689 -22.20648 -21.43338 -19.85426 -19.21108 -17.99522 -17.37211 -16.72235 -16.28147 -15.88077 -15.61476 -15.44657 -15.26364 -15.03928 -14.57458 -14.43942 -14.28978 -14.03074 -13.61151 -13.19132 -12.98428 -12.80711 -12.54452 -12.50613 -12.38192 -12.26253 -11.88155 -11.61848 -11.50018 -11.27756 -11.20115 -11.04977 -10.99145 -10.91523 -10.88668 -10.69221 -10.61745 -10.46618 -10.14903 -10.04378 -9.75913 -9.68554 -9.41174 -8.90017 -8.81098 -8.62686 -8.37544 -7.31434 -6.00663 -4.07392 1.83772 2.18072 2.57281 3.30452 3.34102 3.38281 3.41734 3.64126 3.90532 4.35220 4.37265 4.44302 4.49060 4.60744 4.62329 4.64891 4.77059 4.77708 4.81008 4.85328 4.97845 5.05450 5.21032 5.26438 5.27977 5.30835 5.42528 5.47168 5.52738 5.56176 5.59766 5.60306 5.67093 5.78282 5.84322 6.02322 6.04581 6.13065 6.14157 6.28131 6.38856 6.45226 6.54304 6.62766 6.71793 6.84460 7.02333 7.11203 7.21996 7.51123 7.66587 7.79094 8.01882 8.30258 8.48460 8.95049 9.40667 9.57148 11.05788 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.003530 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.930085 B = 7930.550280 C = 9663.558523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.228 3.772 3 H 0.054 0.946 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.451 5.451 13 C 0.029 3.971 14 C 0.388 3.612 15 N -0.316 5.316 16 N -0.284 5.284 17 C 0.177 3.823 18 C -0.072 4.072 19 C -0.151 4.151 20 C -0.162 4.162 21 N -0.483 5.483 22 C 0.114 3.886 23 C 0.031 3.969 24 N -0.520 5.520 25 C 0.068 3.932 26 C -0.191 4.191 27 C -0.150 4.150 28 C -0.133 4.133 29 C 0.053 3.947 30 H 0.022 0.978 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.029 0.971 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.081 0.919 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -9.633 -22.905 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.124 3.876 3 H 0.071 0.929 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.174 5.174 13 C -0.118 4.118 14 C 0.032 3.968 15 N -0.160 5.160 16 N -0.123 5.123 17 C -0.090 4.090 18 C -0.093 4.093 19 C -0.189 4.189 20 C -0.200 4.200 21 N -0.180 5.180 22 C -0.010 4.010 23 C -0.097 4.097 24 N -0.242 5.242 25 C -0.060 4.060 26 C -0.210 4.210 27 C -0.169 4.169 28 C -0.171 4.171 29 C -0.075 4.075 30 H 0.041 0.959 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.126 0.874 49 H 0.122 0.878 50 H 0.097 0.903 51 H 0.096 0.904 52 H 0.099 0.901 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.042 -8.577 -21.716 23.545 hybrid contribution 0.113 -1.188 -0.452 1.276 sum 3.155 -9.765 -22.167 24.427 Atomic orbital electron populations 1.22377 0.99099 0.98970 1.02377 1.19386 0.91204 0.94711 0.82313 0.92862 1.21060 1.31567 1.12927 0.89419 0.91751 1.24895 0.95066 0.95067 0.98921 1.69937 1.36247 1.22644 1.23470 0.86432 0.78526 0.79594 0.82789 1.19706 1.21002 1.21080 1.59277 1.55834 1.03081 0.99223 1.22542 0.96683 0.88868 1.03701 1.23279 0.94294 0.95061 0.84142 1.74885 1.18975 1.11293 1.10844 1.73888 1.17727 1.23406 0.97260 1.23337 1.02421 0.88997 0.94227 1.19865 0.99745 1.04737 0.84929 1.22998 1.02605 0.91196 1.02078 1.23031 0.95468 1.01719 0.99824 1.45996 1.43878 1.20683 1.07461 1.21820 0.93039 0.84013 1.02142 1.22629 0.96345 0.89665 1.01083 1.62731 1.10777 1.08155 1.42577 1.21278 0.94218 1.02563 0.87898 1.22872 0.97655 1.01317 0.99190 1.22138 0.95457 0.99674 0.99588 1.21125 0.98234 1.00646 0.97110 1.22274 0.96259 0.94246 0.94727 0.95883 0.89111 0.94795 0.92863 0.92301 0.88685 0.95284 0.86853 0.87157 0.88285 0.88478 0.88334 0.87211 0.89479 0.93035 0.89486 0.89441 0.89095 0.87428 0.87750 0.90341 0.90442 0.90074 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 8.19 37.16 0.30 -4.02 16 2 C 0.23 5.92 2.00 -68.86 -0.14 5.78 16 3 H 0.05 1.59 7.84 -51.93 -0.41 1.18 16 4 C -0.51 -13.83 7.82 -34.44 -0.27 -14.10 16 5 H 0.06 1.71 7.18 -52.49 -0.38 1.33 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.45 -9.91 4.71 -176.08 -0.83 -10.74 16 13 C 0.03 0.55 7.89 60.07 0.47 1.02 16 14 C 0.39 8.19 6.70 -318.88 -2.14 6.06 16 15 N -0.32 -7.40 9.46 30.31 0.29 -7.11 16 16 N -0.28 -5.88 11.79 32.99 0.39 -5.49 16 17 C 0.18 2.96 7.59 -154.02 -1.17 1.79 16 18 C -0.07 -0.85 6.01 -91.77 -0.55 -1.41 16 19 C -0.15 -1.60 10.15 -26.70 -0.27 -1.87 16 20 C -0.16 -1.64 10.24 -26.70 -0.27 -1.91 16 21 N -0.48 -8.09 2.81 -114.08 -0.32 -8.41 16 22 C 0.11 1.43 4.47 -4.04 -0.02 1.41 16 23 C 0.03 0.34 4.31 -3.83 -0.02 0.33 16 24 N -0.52 -4.85 5.13 -236.12 -1.21 -6.07 16 25 C 0.07 0.53 5.69 -5.28 -0.03 0.50 16 26 C -0.19 -1.39 9.52 -35.96 -0.34 -1.73 16 27 C -0.15 -1.11 9.32 -35.89 -0.33 -1.45 16 28 C -0.13 -0.98 5.52 -28.03 -0.15 -1.14 16 29 C 0.05 0.42 6.06 -3.59 -0.02 0.40 16 30 H 0.02 0.55 6.56 -51.93 -0.34 0.20 16 31 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 32 H 0.03 0.86 6.14 -51.93 -0.32 0.54 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 0.92 4.41 -51.93 -0.23 0.70 16 35 H 0.09 1.87 6.64 -51.93 -0.35 1.52 16 36 H 0.03 0.55 6.81 -51.93 -0.35 0.20 16 37 H 0.11 1.11 7.68 -51.93 -0.40 0.71 16 38 H 0.11 1.39 7.92 -51.93 -0.41 0.98 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.11 1.50 7.50 -51.93 -0.39 1.11 16 43 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16 44 H 0.05 0.57 5.57 -51.93 -0.29 0.28 16 45 H 0.09 1.11 6.18 -51.93 -0.32 0.79 16 46 H 0.09 0.66 5.66 -51.93 -0.29 0.37 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.65 6.86 -51.93 -0.36 0.29 16 52 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 53 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -31.67 399.19 -13.50 -45.17 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.39 Total: 4.08 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -5.04 Total: -8.70 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -1.06 Total: -62.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.67 -13.50 -45.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001741800577.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.292 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds