Wall clock time and date at job start Wed Apr 1 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46780 * 2 1 4 4 N 1.46500 * 109.46814 * 172.15719 * 3 2 1 5 5 C 1.36891 * 120.00086 * 77.84590 * 4 3 2 6 6 H 1.08002 * 119.99963 * 168.81199 * 5 4 3 7 7 C 1.39040 * 119.99911 * 349.08794 * 5 4 3 8 8 N 1.31363 * 119.99755 * 21.70101 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 201.70712 * 7 5 4 10 10 H 1.48498 * 109.46953 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47056 * 119.99484 * 9 7 5 12 12 H 1.48498 * 109.46906 * 239.99847 * 9 7 5 13 13 C 1.34778 * 120.00000 * 257.84219 * 4 3 2 14 14 O 1.21599 * 120.00019 * 174.75352 * 13 4 3 15 15 C 1.47650 * 120.00140 * 354.75508 * 13 4 3 16 16 C 1.39697 * 120.15865 * 57.93412 * 15 13 4 17 17 C 1.37874 * 119.85638 * 179.71646 * 16 15 13 18 18 C 1.38439 * 120.18969 * 0.54274 * 17 16 15 19 19 S 1.76197 * 119.83605 * 179.73649 * 18 17 16 20 20 N 1.65595 * 107.21949 * 270.02049 * 19 18 17 21 21 O 1.42106 * 106.40400 * 23.56323 * 19 18 17 22 22 O 1.42100 * 106.40147 * 156.47975 * 19 18 17 23 23 C 1.38287 * 120.32885 * 359.75938 * 18 17 16 24 24 C 1.38136 * 120.13536 * 359.95182 * 23 18 17 25 25 Cl 1.73597 * 120.09414 * 180.02562 * 24 23 18 26 26 H 1.08996 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47106 * 300.00486 * 1 2 3 28 28 H 1.08997 * 109.46780 * 60.00248 * 1 2 3 29 29 H 1.09001 * 109.47551 * 239.99935 * 2 1 3 30 30 H 1.09001 * 109.47250 * 119.99580 * 2 1 3 31 31 H 1.08999 * 109.47594 * 52.16140 * 3 2 1 32 32 H 1.08994 * 109.47144 * 292.15369 * 3 2 1 33 33 H 0.97003 * 120.00068 * 180.02562 * 8 7 5 34 34 H 1.08001 * 120.06941 * 359.97438 * 16 15 13 35 35 H 1.08005 * 119.90577 * 180.27469 * 17 16 15 36 36 H 0.97002 * 120.00201 * 150.00094 * 20 19 18 37 37 H 0.97003 * 120.00107 * 329.99521 * 20 19 18 38 38 H 1.07997 * 119.93062 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4928 1.4469 0.1885 5 6 4.3199 1.1468 -0.8602 6 1 5.3823 1.3232 -0.7776 7 6 3.7917 0.6204 -2.0337 8 7 2.5218 0.7973 -2.3196 9 14 4.8878 -0.3385 -3.2036 10 1 6.2669 -0.3949 -2.6556 11 1 4.3595 -1.7176 -3.3585 12 1 4.9086 0.3353 -4.5267 13 6 4.0150 1.7463 1.3944 14 8 5.2139 1.6573 1.5768 15 6 3.1313 2.1824 2.4939 16 6 2.0860 1.3605 2.9222 17 6 1.2683 1.7713 3.9534 18 6 1.4734 3.0000 4.5574 19 16 0.4184 3.5187 5.8698 20 7 -0.8467 4.3401 5.1864 21 8 -0.1298 2.3359 6.4354 22 8 1.1549 4.4716 6.6239 23 6 2.5019 3.8225 4.1354 24 6 3.3330 3.4218 3.1074 25 17 4.6242 4.4549 2.5790 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5667 1.9953 0.8116 32 1 1.7957 1.9142 -0.9517 33 1 2.1532 0.4297 -3.1381 34 1 1.9215 0.4036 2.4493 35 1 0.4626 1.1346 4.2882 36 1 -1.7169 4.3342 5.6148 37 1 -0.7175 4.8272 4.3575 38 1 2.6558 4.7799 4.6108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343129607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:57 Heat of formation + Delta-G solvation = -70.326610 kcal Electronic energy + Delta-G solvation = -26525.271699 eV Core-core repulsion = 22521.621977 eV Total energy + Delta-G solvation = -4003.649722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.89213 -37.97460 -37.29244 -36.22492 -35.96488 -35.56650 -33.40227 -32.58476 -31.80541 -31.09029 -30.80958 -26.20487 -25.18581 -23.51979 -22.84611 -20.87974 -19.92486 -19.63416 -18.51040 -17.55783 -17.29764 -16.84085 -16.57600 -15.93689 -15.21959 -15.08936 -14.90115 -14.41742 -14.26490 -13.77364 -13.62264 -13.43750 -13.28694 -12.73995 -12.34057 -12.29964 -12.22600 -12.12715 -11.92188 -11.61545 -11.53678 -11.42780 -11.34184 -11.16262 -10.94800 -10.75154 -10.64042 -10.52230 -10.44269 -10.36097 -9.98315 -9.18982 -8.98322 -8.79433 -8.62087 -7.91894 -6.49938 -3.99457 0.21273 0.57149 1.14057 2.31019 2.88464 3.01057 3.14777 3.18795 3.25337 3.54771 3.73672 3.94340 4.37562 4.48992 4.73240 4.85471 4.96227 5.21117 5.28148 5.41218 5.66305 5.75689 5.77516 5.80964 5.84297 5.96260 6.07754 6.23222 6.26369 6.45659 6.60790 6.66506 6.74615 6.80355 7.17860 7.36492 7.49194 7.85427 8.29640 8.93437 9.17115 9.72013 10.36994 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003790 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.382277 B = 7386.375712 C = 8561.806173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.104 3.896 4 N -0.418 5.418 5 C -0.296 4.296 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.854 5.854 9 Si 0.923 3.077 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.457 3.543 14 O -0.570 6.570 15 C -0.013 4.013 16 C -0.112 4.112 17 C -0.019 4.019 18 C -0.676 4.676 19 S 2.708 3.292 20 N -1.249 6.249 21 O -0.963 6.963 22 O -0.962 6.962 23 C -0.019 4.019 24 C -0.033 4.033 25 Cl -0.042 7.042 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.126 0.874 33 H 0.270 0.730 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.420 0.580 37 H 0.418 0.582 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 4.762 7.931 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.019 4.019 4 N -0.133 5.133 5 C -0.424 4.424 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.494 5.494 9 Si 0.749 3.251 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.245 3.755 14 O -0.455 6.455 15 C -0.018 4.018 16 C -0.132 4.132 17 C -0.038 4.038 18 C -0.764 4.764 19 S 2.796 3.204 20 N -0.922 5.922 21 O -0.953 6.953 22 O -0.951 6.951 23 C -0.039 4.039 24 C -0.062 4.062 25 Cl -0.013 7.013 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.250 0.750 37 H 0.246 0.754 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.572 4.497 8.734 13.716 hybrid contribution 0.309 -0.301 -1.609 1.666 sum -9.263 4.196 7.125 12.417 Atomic orbital electron populations 1.21641 0.97005 1.00288 1.00922 1.22053 0.94097 0.98218 1.02036 1.22099 0.79797 0.97044 1.02933 1.43820 1.06350 1.55713 1.07449 1.19817 0.92563 1.38233 0.91777 0.87367 1.25287 0.96350 0.97267 0.98057 1.69993 1.13158 1.41396 1.24810 0.85901 0.80616 0.79398 0.79147 1.18958 1.20309 1.20667 1.17546 0.87663 0.87540 0.82744 1.90684 1.14268 1.58852 1.81674 1.20680 0.93609 0.91920 0.95591 1.21717 0.93851 1.00772 0.96836 1.20884 0.97701 0.93038 0.92215 1.30527 1.16149 1.05635 1.24103 1.01358 0.72770 0.73456 0.72786 1.53132 1.28024 1.70460 1.40625 1.93595 1.78110 1.47921 1.75643 1.93612 1.72096 1.62285 1.67088 1.20685 0.91442 0.99049 0.92733 1.20985 0.93869 0.92977 0.98333 1.98395 1.47915 1.65400 1.89581 0.93868 0.94130 0.92534 0.88824 0.94921 0.94679 0.85621 0.91860 0.83397 0.83496 0.75032 0.75429 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.13 -2.36 5.12 -26.73 -0.14 -2.50 16 3 C 0.10 2.14 4.25 -4.04 -0.02 2.12 16 4 N -0.42 -9.94 2.66 -115.95 -0.31 -10.25 16 5 C -0.30 -7.61 9.37 -15.00 -0.14 -7.75 16 6 H 0.11 2.98 7.34 -52.49 -0.39 2.59 16 7 C 0.03 0.82 4.70 -17.45 -0.08 0.73 16 8 N -0.85 -19.54 7.91 55.50 0.44 -19.10 16 9 Si 0.92 19.14 29.61 -169.99 -5.03 14.11 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.46 10.81 6.42 -12.42 -0.08 10.73 16 14 O -0.57 -15.40 16.04 5.28 0.08 -15.31 16 15 C -0.01 -0.25 4.64 -104.94 -0.49 -0.74 16 16 C -0.11 -1.81 7.70 -39.17 -0.30 -2.11 16 17 C -0.02 -0.25 9.50 -39.64 -0.38 -0.63 16 18 C -0.68 -8.56 5.98 -39.49 -0.24 -8.79 16 19 S 2.71 28.72 6.28 -107.50 -0.67 28.04 16 20 N -1.25 -7.93 9.52 60.35 0.57 -7.36 16 21 O -0.96 -12.64 17.27 -57.17 -0.99 -13.62 16 22 O -0.96 -13.02 17.27 -57.17 -0.99 -14.01 16 23 C -0.02 -0.27 9.29 -39.60 -0.37 -0.64 16 24 C -0.03 -0.58 6.35 -39.05 -0.25 -0.83 16 25 Cl -0.04 -0.77 27.54 -51.86 -1.43 -2.19 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 2.00 5.60 -51.93 -0.29 1.71 16 30 H 0.03 0.60 6.33 -51.93 -0.33 0.27 16 31 H 0.03 0.65 5.36 -51.93 -0.28 0.37 16 32 H 0.13 2.82 5.86 -51.93 -0.30 2.52 16 33 H 0.27 5.85 8.31 -40.82 -0.34 5.52 16 34 H 0.15 2.33 5.41 -52.49 -0.28 2.05 16 35 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 36 H 0.42 1.85 8.96 -34.47 -0.31 1.54 16 37 H 0.42 1.92 8.96 -34.47 -0.31 1.61 16 38 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -32.19 340.40 -8.98 -41.18 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.69 Total: 5.52 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.10 Total: -12.14 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.71 Total: -36.70 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.89 Total: -42.94 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 28.72 SS G_CDS: -0.67 Total: 28.04 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.43 Total: -2.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.19 -8.98 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343129607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.151 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds