Wall clock time and date at job start Wed Apr 1 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47762 * 2 1 4 4 C 1.50698 * 109.47190 * 120.00541 * 2 1 3 5 5 H 1.08005 * 120.00749 * 119.99614 * 4 2 1 6 6 C 1.37878 * 119.99957 * 299.99891 * 4 2 1 7 7 N 1.31512 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00203 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47563 * 89.99472 * 8 6 4 10 10 H 1.48498 * 109.46883 * 210.00070 * 8 6 4 11 11 H 1.48505 * 109.46750 * 329.99218 * 8 6 4 12 12 N 1.46508 * 109.46912 * 240.00254 * 2 1 3 13 13 C 1.46497 * 119.99822 * 300.00116 * 12 2 1 14 14 C 1.34771 * 120.00145 * 120.00427 * 12 2 1 15 15 O 1.21530 * 119.99795 * 4.50239 * 14 12 2 16 16 C 1.48076 * 120.00265 * 184.50765 * 14 12 2 17 17 C 1.39871 * 120.92780 * 311.03311 * 16 14 12 18 18 C 1.38083 * 119.01637 * 180.25528 * 17 16 14 19 19 S 1.76203 * 119.52789 * 179.70378 * 18 17 16 20 20 C 1.81398 * 104.44967 * 90.00112 * 19 18 17 21 21 O 1.42102 * 104.27399 * 206.06858 * 19 18 17 22 22 O 1.42099 * 104.27570 * 333.92445 * 19 18 17 23 23 N 1.31848 * 120.93948 * 359.42752 * 18 17 16 24 24 C 1.31758 * 122.07223 * 0.58947 * 23 18 17 25 25 C 1.38364 * 120.86843 * 359.70509 * 24 23 18 26 26 Cl 1.73601 * 120.51601 * 179.97438 * 25 24 23 27 27 H 1.08992 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46458 * 300.00006 * 1 2 3 29 29 H 1.09000 * 109.46701 * 59.99478 * 1 2 3 30 30 H 0.97002 * 119.99921 * 180.02562 * 7 6 4 31 31 H 1.09008 * 109.47270 * 273.10733 * 13 12 2 32 32 H 1.09007 * 109.47613 * 33.10939 * 13 12 2 33 33 H 1.08997 * 109.47051 * 153.11219 * 13 12 2 34 34 H 1.08002 * 120.49062 * 359.97438 * 17 16 14 35 35 H 1.08998 * 109.47447 * 59.99322 * 20 19 18 36 36 H 1.08996 * 109.46988 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.46844 * 299.99651 * 20 19 18 38 38 H 1.07999 * 119.56416 * 179.67743 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.6305 -0.5445 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4879 -2.5657 3.7120 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.1545 1.1013 -1.8515 16 6 3.2042 -0.7013 -3.3406 17 6 3.7475 -1.9901 -3.3274 18 6 4.1224 -2.5712 -4.5225 19 16 4.8155 -4.1912 -4.5207 20 6 3.3862 -5.2953 -4.6899 21 8 5.6174 -4.2305 -5.6932 22 8 5.3970 -4.3221 -3.2307 23 7 3.9640 -1.9334 -5.6655 24 6 3.4568 -0.7188 -5.7245 25 6 3.0597 -0.0588 -4.5751 26 17 2.3931 1.5417 -4.6633 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7096 1.1616 3.4845 31 1 2.3852 -2.7378 -0.9251 32 1 0.6668 -2.2862 -1.0334 33 1 1.6777 -2.2991 -2.4984 34 1 3.8762 -2.5210 -2.3957 35 1 2.8662 -5.0762 -5.6224 36 1 3.7260 -6.3309 -4.6975 37 1 2.7075 -5.1422 -3.8507 38 1 3.3500 -0.2319 -6.6826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816944607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:09 Heat of formation + Delta-G solvation = -54.423641 kcal Electronic energy + Delta-G solvation = -26311.836985 eV Core-core repulsion = 22308.876867 eV Total energy + Delta-G solvation = -4002.960117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.059 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91906 -38.92855 -37.39647 -36.92034 -36.23659 -35.59701 -33.56797 -32.45741 -31.80153 -29.88536 -29.45512 -26.61950 -25.41823 -25.08508 -24.27661 -21.91260 -19.90027 -18.90642 -17.87196 -17.46634 -16.88703 -16.69777 -16.57738 -16.23345 -15.77741 -15.58092 -15.00847 -14.65288 -14.34350 -14.19170 -13.78835 -13.56191 -13.38537 -13.13920 -12.74723 -12.58518 -12.36874 -12.35479 -12.25804 -11.91702 -11.73091 -11.67894 -11.40479 -11.22767 -11.14735 -10.92378 -10.85531 -10.42747 -10.29756 -10.25722 -10.07343 -9.58453 -9.35675 -9.25645 -8.52481 -7.85784 -6.16541 -4.25263 -0.38976 0.05454 0.47918 1.67296 2.38269 2.69915 3.16105 3.23198 3.29539 3.30517 3.39103 3.56667 3.67085 4.10906 4.30512 4.33496 4.39981 4.41213 4.50365 4.74399 4.94230 5.14459 5.19578 5.26336 5.28682 5.38545 5.78965 5.81015 6.04675 6.60937 6.65661 6.88398 7.04983 7.17350 7.30929 7.58828 7.86379 8.02699 8.25282 8.56827 8.79974 9.41620 10.88873 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004063 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.374938 B = 6889.887271 C = 8712.236008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.577 5.577 13 C 0.072 3.928 14 C 0.542 3.458 15 O -0.515 6.515 16 C -0.075 4.075 17 C -0.048 4.048 18 C -0.440 4.440 19 S 2.508 3.492 20 C -0.645 4.645 21 O -0.913 6.913 22 O -0.922 6.922 23 N -0.372 5.372 24 C 0.093 3.907 25 C -0.006 4.006 26 Cl -0.013 7.013 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.012 0.988 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.171 0.829 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -10.346 -16.660 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.307 5.307 13 C -0.071 4.071 14 C 0.326 3.674 15 O -0.392 6.392 16 C -0.088 4.088 17 C -0.069 4.069 18 C -0.657 4.657 19 S 2.682 3.318 20 C -0.796 4.796 21 O -0.911 6.911 22 O -0.919 6.919 23 N -0.082 5.082 24 C -0.069 4.069 25 C -0.036 4.036 26 Cl 0.017 6.983 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.188 0.812 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.230 -10.066 -17.015 19.808 hybrid contribution -0.887 0.486 1.588 1.883 sum 0.342 -9.580 -15.428 18.163 Atomic orbital electron populations 1.22114 0.97828 0.99562 1.01124 1.19083 0.91044 0.94577 0.79316 0.91534 1.21267 1.32216 1.13244 0.90044 0.92046 1.24882 0.94777 0.94939 0.99023 1.69867 1.36116 1.22499 1.23964 0.86462 0.78709 0.79899 0.82151 1.20510 1.21095 1.19803 1.48233 1.47793 1.11635 1.23083 1.21874 1.02771 0.83346 0.99143 1.17841 0.80726 0.86316 0.82565 1.90819 1.54524 1.17379 1.76465 1.20821 0.98695 0.94335 0.94914 1.22384 0.91160 0.93724 0.99676 1.33335 1.14277 1.24283 0.93827 1.05523 0.76777 0.74464 0.75030 1.30177 1.20654 1.16063 1.12723 1.93605 1.63538 1.85024 1.48883 1.93661 1.73218 1.84981 1.40054 1.67734 1.06662 1.07850 1.25977 1.23066 0.95384 0.90902 0.97594 1.22518 0.96766 0.89549 0.94800 1.98452 1.82314 1.19128 1.98411 0.94927 0.88461 0.96865 0.92550 0.92116 0.90051 0.93157 0.81164 0.84514 0.84383 0.84566 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.94 37.16 0.33 -2.99 16 2 C 0.26 6.27 2.63 -69.08 -0.18 6.09 16 3 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.56 7.56 -52.48 -0.40 1.16 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.58 -11.58 2.75 -176.28 -0.49 -12.06 16 13 C 0.07 1.10 8.39 59.85 0.50 1.60 16 14 C 0.54 10.84 6.84 -12.23 -0.08 10.75 16 15 O -0.52 -12.17 15.32 5.34 0.08 -12.09 16 16 C -0.07 -1.18 4.92 -104.62 -0.51 -1.69 16 17 C -0.05 -0.64 7.11 -39.03 -0.28 -0.92 16 18 C -0.44 -5.17 6.53 -17.60 -0.11 -5.28 16 19 S 2.51 23.68 5.86 -107.50 -0.63 23.05 16 20 C -0.65 -2.88 10.80 101.05 1.09 -1.79 16 21 O -0.91 -11.48 17.73 -57.54 -1.02 -12.50 16 22 O -0.92 -11.40 17.10 -57.54 -0.98 -12.39 16 23 N -0.37 -4.50 10.01 -12.47 -0.12 -4.63 16 24 C 0.09 1.07 10.99 -17.54 -0.19 0.87 16 25 C -0.01 -0.08 6.37 -38.91 -0.25 -0.33 16 26 Cl -0.01 -0.18 27.38 -51.86 -1.42 -1.60 16 27 H 0.03 0.66 6.68 -51.93 -0.35 0.32 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.06 0.86 7.52 -51.92 -0.39 0.47 16 32 H 0.08 1.21 6.44 -51.93 -0.33 0.88 16 33 H 0.05 0.59 5.66 -51.93 -0.29 0.30 16 34 H 0.17 2.09 6.17 -52.49 -0.32 1.76 16 35 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -35.16 347.45 -7.82 -42.98 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.01 Total: -1.86 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.07 Total: -5.99 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.02 Total: -40.29 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.92 Total: -36.98 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 23.68 SS G_CDS: -0.63 Total: 23.05 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.42 Total: -1.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.16 -7.82 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816944607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.447 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds