Wall clock time and date at job start Wed Apr 1 2020 03:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00437 * 2 1 4 4 C 1.52996 * 109.47256 * 66.04442 * 3 2 1 5 5 N 1.46498 * 109.47059 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 3 7 7 O 1.21623 * 119.99969 * 0.28063 * 6 5 4 8 8 C 1.47224 * 119.99940 * 180.27642 * 6 5 4 9 9 N 1.30602 * 125.53370 * 359.69956 * 8 6 5 10 10 C 1.30738 * 115.89674 * 179.77825 * 9 8 6 11 11 Cl 1.73601 * 122.12058 * 180.23979 * 10 9 8 12 12 C 1.34339 * 115.75802 * 0.51421 * 10 9 8 13 13 S 1.71070 * 109.09222 * 359.72722 * 12 10 9 14 14 C 1.46904 * 110.99929 * 236.04252 * 2 1 3 15 15 C 1.50702 * 109.47229 * 293.95652 * 14 2 1 16 16 O 1.21295 * 120.00182 * 359.97438 * 15 14 2 17 17 N 1.34773 * 119.99909 * 179.97438 * 15 14 2 18 18 C 1.37098 * 120.00004 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99904 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00341 * 180.02562 * 18 17 15 21 21 N 1.31404 * 120.00171 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99810 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47317 * 89.99698 * 22 20 18 24 24 H 1.48499 * 109.47004 * 209.99992 * 22 20 18 25 25 H 1.48506 * 109.46851 * 329.99749 * 22 20 18 26 26 H 1.08997 * 109.47245 * 59.99998 * 1 2 3 27 27 H 1.09004 * 109.47550 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46793 * 300.00148 * 1 2 3 29 29 H 1.09004 * 109.46774 * 306.04642 * 3 2 1 30 30 H 1.09000 * 109.47249 * 186.05267 * 3 2 1 31 31 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 32 32 H 1.08994 * 109.46974 * 300.00526 * 4 3 2 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 34 34 H 1.08001 * 125.45309 * 179.71927 * 12 10 9 35 35 H 1.09000 * 109.46764 * 53.95363 * 14 2 1 36 36 H 1.08996 * 109.47444 * 173.95709 * 14 2 1 37 37 H 0.97004 * 120.00472 * 0.02562 * 17 15 14 38 38 H 0.97005 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1561 3.4253 1.3179 6 6 1.9504 4.2261 2.3822 7 8 1.3335 3.8115 3.3450 8 6 2.4723 5.6027 2.3794 9 7 3.1510 6.1552 1.4100 10 6 3.5198 7.3942 1.6050 11 17 4.4229 8.2858 0.4205 12 6 3.1604 7.9319 2.7825 13 16 2.2892 6.7693 3.6858 14 6 1.9954 -0.7661 -1.1376 15 6 1.6368 -2.2205 -0.9728 16 8 1.0053 -2.5834 -0.0029 17 7 2.0179 -3.1181 -1.9032 18 6 1.6921 -4.4413 -1.7530 19 1 1.1298 -4.7643 -0.8894 20 6 2.0854 -5.3668 -2.7119 21 7 1.7728 -6.6350 -2.5682 22 14 3.0587 -4.8082 -4.2053 23 1 4.5111 -4.8755 -3.9032 24 1 2.7509 -5.6943 -5.3565 25 1 2.6876 -3.4105 -4.5434 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5611 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1084 31 1 2.0659 1.5015 2.1492 32 1 0.5473 2.0844 1.4264 33 1 2.6478 3.7560 0.5499 34 1 3.3855 8.9371 3.1070 35 1 1.5610 -0.3873 -2.0628 36 1 3.0796 -0.6613 -1.1756 37 1 2.5233 -2.8280 -2.6787 38 1 2.0470 -7.2811 -3.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:33 Heat of formation + Delta-G solvation = -7.810237 kcal Electronic energy + Delta-G solvation = -24012.581304 eV Core-core repulsion = 20043.935246 eV Total energy + Delta-G solvation = -3968.646057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78960 -39.62716 -38.81036 -37.11727 -36.95918 -34.88894 -33.87638 -31.69093 -31.46931 -29.61894 -27.92875 -27.03224 -25.31174 -23.81397 -22.44291 -21.33961 -20.43909 -19.36915 -19.28271 -18.27431 -17.75513 -16.54449 -16.34191 -16.20969 -15.98088 -15.61376 -15.02833 -14.98857 -14.70232 -14.41005 -14.10483 -13.84198 -13.59230 -13.16700 -13.08445 -12.73406 -12.44549 -12.24838 -12.09648 -11.91286 -11.65586 -11.57123 -11.39997 -11.17521 -11.09132 -11.03250 -10.60287 -10.52554 -10.46548 -9.97849 -9.55329 -9.53136 -9.31769 -8.61641 -8.18794 -8.03273 -6.31157 -3.82555 -0.50398 0.33835 0.62558 1.52008 1.59674 2.61682 2.63771 3.01823 3.06521 3.14823 3.58697 3.72812 4.01226 4.10145 4.26520 4.40800 4.67939 4.74791 4.88319 4.94940 5.20289 5.29925 5.46506 5.57493 5.69666 5.74011 5.79593 5.87095 5.94280 5.98735 6.48137 6.51171 6.98533 7.07928 7.20207 7.57936 7.62819 8.14483 8.59892 8.95248 9.42222 9.82957 10.81907 Molecular weight = 346.07amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.001718 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.620804 B =16298.185403 C =17458.536652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.514 5.514 3 C 0.043 3.957 4 C 0.120 3.880 5 N -0.699 5.699 6 C 0.598 3.402 7 O -0.519 6.519 8 C -0.005 4.005 9 N -0.421 5.421 10 C 0.108 3.892 11 Cl -0.004 7.004 12 C -0.275 4.275 13 S 0.307 5.693 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.558 6.558 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 H 0.017 0.983 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.411 0.589 34 H 0.196 0.804 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.370 0.630 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 33.539 6.717 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.239 5.239 3 C -0.086 4.086 4 C -0.003 4.003 5 N -0.351 5.351 6 C 0.379 3.621 7 O -0.394 6.394 8 C -0.281 4.281 9 N -0.141 5.141 10 C -0.057 4.057 11 Cl 0.024 6.976 12 C -0.417 4.417 13 S 0.562 5.438 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.439 6.439 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 H 0.035 0.965 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.213 0.787 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.203 0.797 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.453 32.207 8.842 33.577 hybrid contribution 1.544 1.587 -3.388 4.047 sum 4.997 33.794 5.454 34.594 Atomic orbital electron populations 1.22660 0.86252 1.04938 0.99324 1.61428 1.09114 1.10384 1.42927 1.22253 1.01028 0.89749 0.95533 1.21504 0.99990 0.79553 0.99270 1.45675 1.56306 1.13972 1.19122 1.16532 0.80032 0.81878 0.83629 1.90920 1.40716 1.73917 1.33833 1.27584 1.04850 1.00825 0.94837 1.66257 1.10531 1.08843 1.28422 1.20398 1.02871 0.90181 0.92221 1.98424 1.71734 1.70992 1.56422 1.26719 1.07892 1.08348 0.98791 1.84262 1.43685 0.99552 1.16331 1.21905 1.00857 0.94064 0.91906 1.19597 0.85209 0.86380 0.85027 1.90537 1.42596 1.79890 1.30912 1.42206 1.51042 1.08381 1.21405 1.19425 1.33850 0.80276 1.09745 0.86237 1.25040 0.97895 0.95140 0.98119 1.69618 1.45635 1.01149 1.35694 0.86674 0.80918 0.78681 0.83101 1.19599 1.20215 1.19550 0.96453 0.88252 0.91638 0.94251 0.89999 0.89438 0.90430 0.75329 0.78698 0.93159 0.89112 0.79734 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.96 60.06 0.54 0.78 16 2 N -0.51 -7.78 4.50 -244.37 -1.10 -8.88 16 3 C 0.04 0.47 5.07 -3.83 -0.02 0.45 16 4 C 0.12 1.30 5.60 -4.04 -0.02 1.28 16 5 N -0.70 -6.65 5.55 -61.45 -0.34 -7.00 16 6 C 0.60 6.45 7.81 -12.61 -0.10 6.35 16 7 O -0.52 -7.02 16.94 5.26 0.09 -6.94 16 8 C -0.01 -0.05 7.46 -14.43 -0.11 -0.16 16 9 N -0.42 -3.82 10.25 -8.61 -0.09 -3.91 16 10 C 0.11 0.84 7.22 -19.39 -0.14 0.70 16 11 Cl 0.00 -0.03 29.20 -51.86 -1.51 -1.54 16 12 C -0.28 -1.48 10.93 29.36 0.32 -1.16 16 13 S 0.31 1.87 23.03 -107.50 -2.48 -0.60 16 14 C 0.04 0.71 5.45 -4.97 -0.03 0.68 16 15 C 0.45 10.04 7.47 -10.99 -0.08 9.96 16 16 O -0.56 -14.59 13.91 5.54 0.08 -14.51 16 17 N -0.59 -13.84 5.09 -10.96 -0.06 -13.90 16 18 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 22 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.10 1.87 5.83 -51.93 -0.30 1.57 16 28 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 29 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.89 6.55 -51.93 -0.34 0.55 16 33 H 0.41 3.25 8.13 -40.82 -0.33 2.91 16 34 H 0.20 0.47 8.06 -52.49 -0.42 0.05 16 35 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -33.84 357.40 -7.89 -41.73 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.04 Total: 9.30 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 0.11 Total: 11.23 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.81 Total: -58.52 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.45 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.48 Total: -0.60 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.51 Total: -1.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.84 -7.89 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.919 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds