Wall clock time and date at job start Wed Apr 1 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00437 * 2 1 4 4 C 1.52996 * 109.47256 * 66.04442 * 3 2 1 5 5 N 1.46498 * 109.47059 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 3 7 7 O 1.21623 * 119.99969 * 0.28063 * 6 5 4 8 8 C 1.47224 * 119.99940 * 180.27642 * 6 5 4 9 9 N 1.30602 * 125.53370 * 359.69956 * 8 6 5 10 10 C 1.30738 * 115.89674 * 179.77825 * 9 8 6 11 11 Cl 1.73601 * 122.12058 * 180.23979 * 10 9 8 12 12 C 1.34339 * 115.75802 * 0.51421 * 10 9 8 13 13 S 1.71070 * 109.09222 * 359.72722 * 12 10 9 14 14 C 1.46904 * 110.99929 * 236.04252 * 2 1 3 15 15 C 1.50702 * 109.47229 * 293.95652 * 14 2 1 16 16 O 1.21295 * 120.00182 * 359.97438 * 15 14 2 17 17 N 1.34773 * 119.99909 * 179.97438 * 15 14 2 18 18 C 1.37098 * 120.00004 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99904 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00341 * 180.02562 * 18 17 15 21 21 N 1.31404 * 120.00171 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99810 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47317 * 89.99698 * 22 20 18 24 24 H 1.48499 * 109.47004 * 209.99992 * 22 20 18 25 25 H 1.48506 * 109.46851 * 329.99749 * 22 20 18 26 26 H 1.08997 * 109.47245 * 59.99998 * 1 2 3 27 27 H 1.09004 * 109.47550 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46793 * 300.00148 * 1 2 3 29 29 H 1.09004 * 109.46774 * 306.04642 * 3 2 1 30 30 H 1.09000 * 109.47249 * 186.05267 * 3 2 1 31 31 H 1.09004 * 109.47066 * 60.00378 * 4 3 2 32 32 H 1.08994 * 109.46974 * 300.00526 * 4 3 2 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 34 34 H 1.08001 * 125.45309 * 179.71927 * 12 10 9 35 35 H 1.09000 * 109.46764 * 53.95363 * 14 2 1 36 36 H 1.08996 * 109.47444 * 173.95709 * 14 2 1 37 37 H 0.97004 * 120.00472 * 0.02562 * 17 15 14 38 38 H 0.97005 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1561 3.4253 1.3179 6 6 1.9504 4.2261 2.3822 7 8 1.3335 3.8115 3.3450 8 6 2.4723 5.6027 2.3794 9 7 3.1510 6.1552 1.4100 10 6 3.5198 7.3942 1.6050 11 17 4.4229 8.2858 0.4205 12 6 3.1604 7.9319 2.7825 13 16 2.2892 6.7693 3.6858 14 6 1.9954 -0.7661 -1.1376 15 6 1.6368 -2.2205 -0.9728 16 8 1.0053 -2.5834 -0.0029 17 7 2.0179 -3.1181 -1.9032 18 6 1.6921 -4.4413 -1.7530 19 1 1.1298 -4.7643 -0.8894 20 6 2.0854 -5.3668 -2.7119 21 7 1.7728 -6.6350 -2.5682 22 14 3.0587 -4.8082 -4.2053 23 1 4.5111 -4.8755 -3.9032 24 1 2.7509 -5.6943 -5.3565 25 1 2.6876 -3.4105 -4.5434 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5611 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1084 31 1 2.0659 1.5015 2.1492 32 1 0.5473 2.0844 1.4264 33 1 2.6478 3.7560 0.5499 34 1 3.3855 8.9371 3.1070 35 1 1.5610 -0.3873 -2.0628 36 1 3.0796 -0.6613 -1.1756 37 1 2.5233 -2.8280 -2.6787 38 1 2.0470 -7.2811 -3.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:32 Heat of formation + Delta-G solvation = -36.800289 kcal Electronic energy + Delta-G solvation = -24013.838407 eV Core-core repulsion = 20043.935246 eV Total energy + Delta-G solvation = -3969.903160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 346.065 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44508 -40.55803 -40.24605 -38.23865 -37.62257 -36.08543 -35.60671 -33.73318 -32.11895 -30.58170 -29.19836 -27.75099 -26.85200 -25.16624 -23.18504 -22.34217 -21.27011 -21.09304 -20.15865 -19.87070 -18.43827 -17.73152 -17.35598 -17.11584 -16.85852 -16.70427 -16.54558 -16.10254 -15.76221 -15.39889 -15.26508 -15.04903 -14.77345 -14.48581 -14.38151 -14.19494 -13.70222 -13.22355 -13.09313 -12.96374 -12.78636 -12.58769 -12.53725 -12.38972 -12.16250 -12.14578 -11.96236 -11.84897 -11.45068 -11.17687 -10.97252 -10.36281 -10.31998 -10.20973 -9.89932 -9.24314 -8.39019 -5.99619 -1.05302 -0.16750 0.10345 0.91625 1.08821 1.31484 1.37557 1.46035 1.86209 1.88702 1.99214 2.24971 2.68107 3.03787 3.17028 3.31948 3.71867 3.82255 3.99732 4.05831 4.13825 4.36229 4.38227 4.45652 4.47672 4.63745 4.64363 4.83286 4.92890 5.15787 5.23307 5.55179 5.87964 5.92951 6.00595 6.14081 6.29306 6.62383 6.87776 6.91552 7.42946 8.00985 8.78685 Molecular weight = 346.07amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.001718 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.620804 B =16298.185403 C =17458.536652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.052 3.948 4 C 0.127 3.873 5 N -0.689 5.689 6 C 0.599 3.401 7 O -0.556 6.556 8 C -0.041 4.041 9 N -0.430 5.430 10 C 0.083 3.917 11 Cl -0.003 7.003 12 C -0.251 4.251 13 S 0.351 5.649 14 C 0.056 3.944 15 C 0.450 3.550 16 O -0.606 6.606 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.054 0.946 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.230 1.230 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.421 0.579 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.390 0.610 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.456 37.629 4.909 38.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.076 4.076 4 C 0.003 3.997 5 N -0.341 5.341 6 C 0.381 3.619 7 O -0.434 6.434 8 C -0.315 4.315 9 N -0.150 5.150 10 C -0.082 4.082 11 Cl 0.025 6.975 12 C -0.393 4.393 13 S 0.605 5.395 14 C -0.075 4.075 15 C 0.238 3.762 16 O -0.490 6.490 17 N -0.235 5.235 18 C -0.455 4.455 19 H 0.072 0.928 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.202 1.202 25 H -0.153 1.153 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.258 0.742 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.225 0.775 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.444 36.337 7.017 37.407 hybrid contribution 0.860 0.403 -2.626 2.792 sum 6.304 36.740 4.391 37.535 Atomic orbital electron populations 1.22498 0.86810 1.02384 1.00929 1.61300 1.08961 1.13060 1.43170 1.22245 1.02096 0.87346 0.95930 1.21302 0.99384 0.80105 0.98903 1.45541 1.55963 1.13302 1.19297 1.16762 0.79363 0.82627 0.83151 1.90894 1.42497 1.74899 1.35096 1.27206 1.06950 1.00736 0.96629 1.66175 1.10377 1.09589 1.28832 1.20554 1.04200 0.90198 0.93248 1.98421 1.71783 1.70771 1.56564 1.27157 1.05343 1.09352 0.97474 1.84183 1.42428 0.98220 1.14696 1.21839 1.03061 0.89039 0.93522 1.20933 0.82926 0.88939 0.83422 1.90530 1.44147 1.81464 1.32824 1.42029 1.51931 1.06749 1.22752 1.18987 1.34737 0.83145 1.08661 0.92764 1.26132 0.98737 0.94672 1.02045 1.69808 1.47321 1.03042 1.37520 0.85356 0.78979 0.80180 0.76926 1.18167 1.20223 1.15271 0.94308 0.92745 0.90620 0.91871 0.88063 0.91379 0.91266 0.74182 0.75518 0.89935 0.85709 0.77485 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 8.96 127.69 1.14 1.79 16 2 N -0.54 -15.33 4.50 -927.06 -4.17 -19.50 16 3 C 0.05 0.96 5.07 86.30 0.44 1.40 16 4 C 0.13 2.60 5.60 86.38 0.48 3.09 16 5 N -0.69 -12.21 5.55 -466.58 -2.59 -14.81 16 6 C 0.60 12.55 7.81 86.60 0.68 13.23 16 7 O -0.56 -15.14 16.94 -4.10 -0.07 -15.21 16 8 C -0.04 -0.69 7.46 87.24 0.65 -0.04 16 9 N -0.43 -7.08 10.25 -181.16 -1.86 -8.94 16 10 C 0.08 1.10 7.22 83.96 0.61 1.70 16 11 Cl 0.00 -0.04 29.20 -2.72 -0.08 -0.12 16 12 C -0.25 -1.95 10.93 66.93 0.73 -1.22 16 13 S 0.35 3.54 23.03 -56.49 -1.30 2.24 16 14 C 0.06 1.63 5.45 85.56 0.47 2.10 16 15 C 0.45 19.96 7.47 87.66 0.66 20.62 16 16 O -0.61 -33.22 13.91 -3.08 -0.04 -33.27 16 17 N -0.59 -27.56 5.09 -306.98 -1.56 -29.12 16 18 C -0.33 -19.05 10.16 84.04 0.85 -18.20 16 19 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 20 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 21 N -0.94 -56.63 13.96 21.66 0.30 -56.32 16 22 Si 0.97 38.49 27.74 68.60 1.90 40.40 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 2.12 5.83 -2.38 -0.01 2.11 16 28 H 0.08 2.02 6.47 -2.38 -0.02 2.01 16 29 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 30 H 0.10 1.54 7.93 -2.39 -0.02 1.52 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 1.54 6.55 -2.39 -0.02 1.52 16 33 H 0.42 5.78 8.13 -92.71 -0.75 5.03 16 34 H 0.23 0.15 8.06 -2.91 -0.02 0.12 16 35 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.13 2.84 7.93 -2.39 -0.02 2.82 16 37 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 38 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -81.25 357.40 -2.50 -83.75 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.20 Total: 26.95 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 7.17 Total: 23.95 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -9.88 Total: -128.68 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.11 Total: -48.48 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.40 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.30 Total: 2.24 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -81.25 -2.50 -83.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.946 kcal (2) G-P(sol) polarization free energy of solvation -81.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds