Wall clock time and date at job start Wed Apr 1 2020 04:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47431 * 89.99998 * 3 2 1 5 5 H 1.48500 * 109.47568 * 210.00182 * 3 2 1 6 6 H 1.48507 * 109.47081 * 330.00348 * 3 2 1 7 7 C 1.37874 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00330 * 359.97438 * 7 2 1 10 10 O 1.42912 * 112.94088 * 50.33292 * 9 7 2 11 11 C 1.53936 * 113.74345 * 278.74346 * 9 7 2 12 12 N 1.47812 * 86.03864 * 222.07890 * 11 9 7 13 13 C 1.34773 * 134.46060 * 204.63830 * 12 11 9 14 14 O 1.21596 * 120.00116 * 174.30104 * 13 12 11 15 15 C 1.47526 * 119.99975 * 354.30547 * 13 12 11 16 16 C 1.39750 * 120.05408 * 353.06563 * 15 13 12 17 17 C 1.37712 * 120.01910 * 179.97438 * 16 15 13 18 18 C 1.39042 * 120.12874 * 359.94770 * 17 16 15 19 19 N 1.39295 * 119.94383 * 180.02562 * 18 17 16 20 20 C 1.39602 * 120.11230 * 0.02868 * 18 17 16 21 21 O 1.36016 * 120.01351 * 179.97438 * 20 18 17 22 22 C 1.42900 * 117.00252 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.46991 * 60.00104 * 22 21 20 24 24 F 1.39899 * 109.47207 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47161 * 300.00242 * 22 21 20 26 26 C 1.38032 * 119.97994 * 359.75991 * 20 18 17 27 27 C 1.47582 * 91.04712 * 24.54812 * 12 11 9 28 28 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 29 29 H 0.96696 * 114.00071 * 309.66648 * 10 9 7 30 30 H 1.08998 * 113.77383 * 336.34375 * 11 9 7 31 31 H 1.09002 * 113.77124 * 107.74008 * 11 9 7 32 32 H 1.08001 * 119.98886 * 359.97126 * 16 15 13 33 33 H 1.07997 * 119.93503 * 179.97438 * 17 16 15 34 34 H 0.97005 * 119.99983 * 0.02562 * 19 18 17 35 35 H 0.97000 * 120.00590 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.06807 * 180.23206 * 26 20 18 37 37 H 1.08999 * 113.76769 * 221.14527 * 27 12 11 38 38 H 1.09004 * 113.86862 * 89.76682 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5468 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5613 -1.0132 11 6 0.7563 -2.9292 1.3923 12 7 1.1920 -4.2900 1.0141 13 6 0.8428 -5.5338 1.3979 14 8 1.3115 -6.5002 0.8278 15 6 -0.1081 -5.7229 2.5099 16 6 -0.5357 -4.6239 3.2597 17 6 -1.4238 -4.8011 4.2971 18 6 -1.8979 -6.0726 4.6005 19 7 -2.7965 -6.2474 5.6504 20 6 -1.4747 -7.1742 3.8547 21 8 -1.9393 -8.4171 4.1536 22 6 -1.4644 -9.4982 3.3487 23 9 -0.0719 -9.5819 3.4547 24 9 -2.0380 -10.6954 3.7902 25 9 -1.8178 -9.2757 2.0135 26 6 -0.5880 -7.0012 2.8111 27 6 2.1609 -3.7401 0.0461 28 1 -0.4850 0.8401 0.0004 29 1 -0.3474 -1.7970 -1.0268 30 1 1.3275 -2.4975 2.2141 31 1 -0.3213 -2.8326 1.5248 32 1 -0.1695 -3.6352 3.0254 33 1 -1.7531 -3.9509 4.8760 34 1 -3.0913 -5.4824 6.1689 35 1 -3.1275 -7.1340 5.8630 36 1 -0.2626 -7.8519 2.2309 37 1 2.2027 -4.2899 -0.8941 38 1 3.1463 -3.5467 0.4699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118696719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:14 Heat of formation + Delta-G solvation = -203.352660 kcal Electronic energy + Delta-G solvation = -30785.898914 eV Core-core repulsion = 25794.303988 eV Total energy + Delta-G solvation = -4991.594926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.52970 -48.28819 -48.09226 -40.60680 -39.48935 -37.81629 -37.11013 -34.64963 -33.97189 -32.24454 -30.57282 -29.68505 -28.08042 -26.29069 -25.47581 -25.20312 -22.99312 -22.80029 -20.61247 -19.65354 -19.22476 -19.21929 -18.49161 -17.45905 -17.31549 -17.16000 -16.65873 -15.62234 -15.41032 -15.32779 -15.07027 -14.89323 -14.74708 -14.59142 -14.55566 -14.53865 -14.45215 -14.23253 -14.08724 -13.64800 -13.35527 -13.20099 -12.80709 -12.57872 -12.54236 -12.18210 -11.96306 -11.60220 -11.38693 -11.10450 -10.98163 -10.72442 -10.53209 -10.31187 -9.67151 -9.25661 -8.89838 -8.79781 -8.40591 -7.92276 -7.60921 -6.41843 -4.52114 1.01985 1.17653 1.34615 2.74858 3.11574 3.12571 3.21450 3.24791 3.46020 3.54730 3.69161 3.84930 4.04508 4.16854 4.58672 4.71077 4.82689 4.98871 5.09613 5.28491 5.48450 5.55465 5.74758 5.85906 6.06829 6.16716 6.22139 6.35358 6.39533 6.43505 6.56651 6.60279 6.73220 7.06806 7.15555 7.44550 7.60427 7.79590 8.44157 8.51408 8.75228 9.19212 9.41107 10.64738 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002843 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.817522 B = 9845.363203 C =10701.992892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.070 3.930 12 N -0.626 5.626 13 C 0.574 3.426 14 O -0.562 6.562 15 C -0.142 4.142 16 C -0.055 4.055 17 C -0.179 4.179 18 C 0.242 3.758 19 N -0.865 5.865 20 C 0.005 3.995 21 O -0.316 6.316 22 C 0.604 3.396 23 F -0.163 7.163 24 F -0.137 7.137 25 F -0.163 7.163 26 C -0.084 4.084 27 C 0.113 3.887 28 H 0.273 0.727 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.403 0.597 35 H 0.404 0.596 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -10.668 12.392 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.053 4.053 12 N -0.359 5.359 13 C 0.365 3.635 14 O -0.444 6.444 15 C -0.147 4.147 16 C -0.074 4.074 17 C -0.202 4.202 18 C 0.135 3.865 19 N -0.405 5.405 20 C -0.041 4.041 21 O -0.236 6.236 22 C 0.514 3.486 23 F -0.145 7.145 24 F -0.118 7.118 25 F -0.145 7.145 26 C -0.104 4.104 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.246 0.754 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.232 0.768 35 H 0.232 0.768 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.208 -11.873 12.095 18.050 hybrid contribution -0.104 1.061 0.393 1.136 sum -6.312 -10.812 12.489 17.684 Atomic orbital electron populations 1.69403 1.06127 1.28176 1.50042 1.25062 0.95028 0.99828 0.93086 0.86344 0.79872 0.82026 0.78348 1.20331 1.19558 1.20942 1.21507 0.93963 0.89901 1.52149 0.91007 1.19844 0.85663 0.91229 0.83465 1.86082 1.47033 1.49823 1.55324 1.24485 1.00118 0.77711 1.02943 1.50039 1.40038 1.04450 1.41372 1.17638 0.81456 0.81964 0.82450 1.90714 1.57525 1.39327 1.56804 1.19542 1.02592 0.92865 0.99743 1.21913 0.93465 0.99878 0.92162 1.20480 1.03338 0.94204 1.02143 1.17120 0.90502 0.90781 0.88062 1.42284 1.50114 1.12712 1.35349 1.17785 1.04135 0.80849 1.01333 1.86222 1.67507 1.14362 1.55551 1.19311 0.74931 0.78745 0.75656 1.93324 1.29644 1.96017 1.95519 1.93283 1.85105 1.43570 1.89836 1.93328 1.91674 1.94311 1.35138 1.21352 0.94908 0.99177 0.95001 1.23469 0.93227 0.92665 0.91498 0.91686 0.75382 0.89627 0.90593 0.82942 0.84151 0.76779 0.76759 0.83812 0.90963 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.79 11.20 55.43 0.62 -21.17 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 4 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -12.96 8.61 -34.44 -0.30 -13.26 16 8 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.24 5.55 1.40 -90.85 -0.13 5.42 16 10 O -0.57 -14.36 13.49 -35.23 -0.48 -14.84 16 11 C 0.07 1.41 5.59 -2.84 -0.02 1.40 16 12 N -0.63 -13.14 3.60 -179.36 -0.65 -13.79 16 13 C 0.57 12.17 7.97 -12.48 -0.10 12.07 16 14 O -0.56 -13.41 17.09 5.28 0.09 -13.32 16 15 C -0.14 -2.51 5.88 -104.95 -0.62 -3.12 16 16 C -0.06 -0.82 9.06 -39.21 -0.36 -1.18 16 17 C -0.18 -2.14 9.86 -39.48 -0.39 -2.53 16 18 C 0.24 2.85 6.77 -83.66 -0.57 2.28 16 19 N -0.87 -6.97 9.06 32.50 0.29 -6.68 16 20 C 0.00 0.06 6.50 -39.15 -0.25 -0.19 16 21 O -0.32 -3.87 9.60 -19.79 -0.19 -4.06 16 22 C 0.60 7.35 3.42 101.05 0.35 7.70 16 23 F -0.16 -2.13 15.57 2.25 0.04 -2.10 16 24 F -0.14 -1.45 17.53 2.25 0.04 -1.41 16 25 F -0.16 -2.17 15.55 2.25 0.04 -2.13 16 26 C -0.08 -1.37 7.79 -39.07 -0.30 -1.68 16 27 C 0.11 2.43 8.23 -2.97 -0.02 2.40 16 28 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 29 H 0.39 9.87 6.60 45.56 0.30 10.17 16 30 H 0.09 1.61 7.99 -51.93 -0.42 1.20 16 31 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 32 H 0.15 2.29 4.07 -52.49 -0.21 2.08 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 35 H 0.40 2.93 8.17 -40.82 -0.33 2.60 16 36 H 0.14 2.45 4.68 -52.49 -0.25 2.21 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -28.52 337.69 -5.36 -33.89 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -2.44 Total: 15.76 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -2.80 Total: 10.96 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.27 Total: -41.64 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.57 Total: -32.22 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.52 -5.36 -33.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118696719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.465 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds