Wall clock time and date at job start Wed Apr 1 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47431 * 89.99998 * 3 2 1 5 5 H 1.48500 * 109.47568 * 210.00182 * 3 2 1 6 6 H 1.48507 * 109.47081 * 330.00348 * 3 2 1 7 7 C 1.37874 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00330 * 359.97438 * 7 2 1 10 10 O 1.42912 * 112.94088 * 50.33292 * 9 7 2 11 11 C 1.53936 * 113.74345 * 278.74346 * 9 7 2 12 12 N 1.47812 * 86.03864 * 222.07890 * 11 9 7 13 13 C 1.34773 * 134.46060 * 204.63830 * 12 11 9 14 14 O 1.21596 * 120.00116 * 174.30104 * 13 12 11 15 15 C 1.47526 * 119.99975 * 354.30547 * 13 12 11 16 16 C 1.39750 * 120.05408 * 353.06563 * 15 13 12 17 17 C 1.37712 * 120.01910 * 179.97438 * 16 15 13 18 18 C 1.39042 * 120.12874 * 359.94770 * 17 16 15 19 19 N 1.39295 * 119.94383 * 180.02562 * 18 17 16 20 20 C 1.39602 * 120.11230 * 0.02868 * 18 17 16 21 21 O 1.36016 * 120.01351 * 179.97438 * 20 18 17 22 22 C 1.42900 * 117.00252 * 179.97438 * 21 20 18 23 23 F 1.39901 * 109.46991 * 60.00104 * 22 21 20 24 24 F 1.39899 * 109.47207 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.47161 * 300.00242 * 22 21 20 26 26 C 1.38032 * 119.97994 * 359.75991 * 20 18 17 27 27 C 1.47582 * 91.04712 * 24.54812 * 12 11 9 28 28 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 29 29 H 0.96696 * 114.00071 * 309.66648 * 10 9 7 30 30 H 1.08998 * 113.77383 * 336.34375 * 11 9 7 31 31 H 1.09002 * 113.77124 * 107.74008 * 11 9 7 32 32 H 1.08001 * 119.98886 * 359.97126 * 16 15 13 33 33 H 1.07997 * 119.93503 * 179.97438 * 17 16 15 34 34 H 0.97005 * 119.99983 * 0.02562 * 19 18 17 35 35 H 0.97000 * 120.00590 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.06807 * 180.23206 * 26 20 18 37 37 H 1.08999 * 113.76769 * 221.14527 * 27 12 11 38 38 H 1.09004 * 113.86862 * 89.76682 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5468 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5613 -1.0132 11 6 0.7563 -2.9292 1.3923 12 7 1.1920 -4.2900 1.0141 13 6 0.8428 -5.5338 1.3979 14 8 1.3115 -6.5002 0.8278 15 6 -0.1081 -5.7229 2.5099 16 6 -0.5357 -4.6239 3.2597 17 6 -1.4238 -4.8011 4.2971 18 6 -1.8979 -6.0726 4.6005 19 7 -2.7965 -6.2474 5.6504 20 6 -1.4747 -7.1742 3.8547 21 8 -1.9393 -8.4171 4.1536 22 6 -1.4644 -9.4982 3.3487 23 9 -0.0719 -9.5819 3.4547 24 9 -2.0380 -10.6954 3.7902 25 9 -1.8178 -9.2757 2.0135 26 6 -0.5880 -7.0012 2.8111 27 6 2.1609 -3.7401 0.0461 28 1 -0.4850 0.8401 0.0004 29 1 -0.3474 -1.7970 -1.0268 30 1 1.3275 -2.4975 2.2141 31 1 -0.3213 -2.8326 1.5248 32 1 -0.1695 -3.6352 3.0254 33 1 -1.7531 -3.9509 4.8760 34 1 -3.0913 -5.4824 6.1689 35 1 -3.1275 -7.1340 5.8630 36 1 -0.2626 -7.8519 2.2309 37 1 2.2027 -4.2899 -0.8941 38 1 3.1463 -3.5467 0.4699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118696719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:13 Heat of formation + Delta-G solvation = -224.912469 kcal Electronic energy + Delta-G solvation = -30786.833817 eV Core-core repulsion = 25794.303988 eV Total energy + Delta-G solvation = -4992.529829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.51959 -49.23824 -49.12160 -41.79964 -40.96765 -39.19120 -38.48339 -35.87385 -35.59652 -34.11333 -31.69760 -31.03885 -29.49152 -27.52979 -27.17432 -26.66229 -24.20959 -23.87629 -22.01518 -21.02748 -20.33399 -20.22453 -19.87323 -19.21161 -18.28976 -18.18606 -18.05635 -17.24043 -16.81248 -16.52887 -16.37740 -16.21843 -15.96751 -15.87658 -15.62557 -15.58957 -15.52765 -15.44067 -15.25267 -15.00086 -14.64651 -14.42474 -14.32542 -14.11195 -13.84663 -13.53986 -13.45686 -13.36892 -12.79341 -12.74272 -12.44503 -12.21603 -12.16819 -11.79638 -11.38626 -10.99014 -10.61571 -10.18941 -9.97321 -9.59450 -8.60170 -8.22498 -6.39086 -0.16790 0.09490 0.34831 1.49743 1.54241 1.62398 1.74431 1.78058 1.92304 2.44261 2.66033 2.67162 2.73628 2.91306 3.00101 3.38914 3.53822 3.78457 3.81278 4.02388 4.18614 4.21366 4.40458 4.51174 4.58480 4.61720 4.81822 4.85556 4.97232 5.09764 5.19299 5.25613 5.31865 5.57288 5.76609 5.96837 6.30298 6.66228 6.81345 6.83821 7.12636 7.34169 7.48524 8.83460 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002843 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.817522 B = 9845.363203 C =10701.992892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.037 3.963 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.220 3.780 10 O -0.587 6.587 11 C 0.089 3.911 12 N -0.629 5.629 13 C 0.566 3.434 14 O -0.603 6.603 15 C -0.177 4.177 16 C -0.054 4.054 17 C -0.169 4.169 18 C 0.262 3.738 19 N -0.841 5.841 20 C -0.003 4.003 21 O -0.306 6.306 22 C 0.606 3.394 23 F -0.170 7.170 24 F -0.125 7.125 25 F -0.171 7.171 26 C -0.093 4.093 27 C 0.110 3.890 28 H 0.276 0.724 29 H 0.388 0.612 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.180 0.820 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 -9.719 15.088 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.164 4.164 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.033 4.033 12 N -0.361 5.361 13 C 0.360 3.640 14 O -0.488 6.488 15 C -0.182 4.182 16 C -0.073 4.073 17 C -0.191 4.191 18 C 0.151 3.849 19 N -0.381 5.381 20 C -0.049 4.049 21 O -0.226 6.226 22 C 0.516 3.484 23 F -0.152 7.152 24 F -0.106 7.106 25 F -0.153 7.153 26 C -0.114 4.114 27 C -0.012 4.012 28 H 0.086 0.914 29 H 0.242 0.758 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.197 0.803 34 H 0.253 0.747 35 H 0.242 0.758 36 H 0.145 0.855 37 H 0.075 0.925 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.469 -10.923 14.846 19.887 hybrid contribution 0.173 0.698 -0.370 0.809 sum -7.295 -10.225 14.477 19.166 Atomic orbital electron populations 1.69461 1.06944 1.28887 1.50022 1.25685 0.95752 1.02316 0.92682 0.85424 0.78393 0.78513 0.78479 1.19449 1.19917 1.21098 1.21689 0.94117 0.90630 1.52891 0.91038 1.20127 0.85808 0.91637 0.84557 1.86072 1.47523 1.49716 1.56597 1.24319 1.00441 0.76899 1.01626 1.50054 1.39937 1.04865 1.41234 1.18290 0.81576 0.81246 0.82938 1.90668 1.59232 1.40355 1.58526 1.19291 1.04188 0.94466 1.00267 1.21880 0.94008 0.98727 0.92677 1.20795 1.01831 0.95386 1.01129 1.17204 0.89812 0.90020 0.87847 1.42321 1.48016 1.14126 1.33608 1.17830 1.04033 0.81856 1.01174 1.86220 1.67216 1.13906 1.55252 1.19286 0.74708 0.79060 0.75380 1.93313 1.30284 1.96060 1.95517 1.93310 1.84851 1.42805 1.89636 1.93313 1.91705 1.94412 1.35896 1.21227 0.95950 0.98217 0.95970 1.23513 0.94195 0.92036 0.91469 0.91442 0.75803 0.87944 0.90306 0.83242 0.80294 0.74720 0.75823 0.85524 0.92544 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.84 11.20 21.45 0.24 -43.60 16 2 C 0.04 1.73 5.39 84.65 0.46 2.19 16 3 Si 0.97 37.89 29.54 68.60 2.03 39.92 16 4 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.29 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -26.71 8.61 25.60 0.22 -26.49 16 8 H 0.07 3.36 7.81 -2.91 -0.02 3.33 16 9 C 0.22 10.28 1.40 -10.89 -0.02 10.27 16 10 O -0.59 -30.24 13.49 -148.98 -2.01 -32.25 16 11 C 0.09 3.58 5.59 86.44 0.48 4.07 16 12 N -0.63 -26.92 3.60 -843.48 -3.03 -29.95 16 13 C 0.57 24.81 7.97 86.69 0.69 25.50 16 14 O -0.60 -30.25 17.09 -4.02 -0.07 -30.32 16 15 C -0.18 -6.28 5.88 -20.08 -0.12 -6.39 16 16 C -0.05 -1.52 9.06 22.51 0.20 -1.32 16 17 C -0.17 -3.44 9.86 22.34 0.22 -3.22 16 18 C 0.26 5.26 6.77 38.48 0.26 5.52 16 19 N -0.84 -9.76 9.06 -51.10 -0.46 -10.22 16 20 C 0.00 -0.07 6.50 22.55 0.15 0.08 16 21 O -0.31 -6.95 9.60 -93.73 -0.90 -7.85 16 22 C 0.61 14.39 3.42 113.37 0.39 14.78 16 23 F -0.17 -4.46 15.57 44.97 0.70 -3.76 16 24 F -0.12 -2.50 17.53 44.97 0.79 -1.71 16 25 F -0.17 -4.61 15.55 44.97 0.70 -3.91 16 26 C -0.09 -3.05 7.79 22.60 0.18 -2.88 16 27 C 0.11 4.84 8.23 86.48 0.71 5.55 16 28 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 29 H 0.39 19.95 6.60 -74.06 -0.49 19.47 16 30 H 0.10 3.75 7.99 -2.39 -0.02 3.73 16 31 H 0.08 3.11 6.90 -2.39 -0.02 3.09 16 32 H 0.15 4.27 4.07 -2.91 -0.01 4.25 16 33 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.42 2.45 8.83 -92.70 -0.82 1.63 16 35 H 0.41 4.18 8.17 -92.71 -0.76 3.43 16 36 H 0.13 4.52 4.68 -2.91 -0.01 4.50 16 37 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.11 4.19 8.09 -2.38 -0.02 4.17 16 Total: -1.00 -62.78 337.69 0.95 -61.84 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.86 Total: 34.17 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 3.83 Total: 27.65 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.26 Total: -83.77 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -2.98 Total: -70.42 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 2.19 Total: -9.38 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -62.78 0.95 -61.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118696719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.077 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds