Wall clock time and date at job start Wed Apr 1 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46500 * 109.46942 * 65.12975 * 10 9 7 12 12 C 1.34782 * 119.99942 * 178.21726 * 11 10 9 13 13 O 1.21583 * 119.99622 * 0.26827 * 12 11 10 14 14 N 1.34770 * 119.99918 * 180.27587 * 12 11 10 15 15 C 1.46505 * 119.99997 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47199 * 179.97438 * 15 14 12 17 17 O 1.42893 * 109.47223 * 64.99906 * 16 15 14 18 18 C 1.42904 * 113.99983 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47121 * 299.99981 * 18 17 16 20 20 F 1.39897 * 109.47199 * 59.99836 * 18 17 16 21 21 C 1.53000 * 109.47213 * 179.97438 * 18 17 16 22 22 F 1.39898 * 109.47275 * 179.97438 * 21 18 17 23 23 F 1.39898 * 109.47125 * 300.00057 * 21 18 17 24 24 F 1.39897 * 109.47108 * 59.99858 * 21 18 17 25 25 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 26 26 C 1.52995 * 117.50230 * 299.73800 * 9 7 2 27 27 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 28 28 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 29 29 H 1.09001 * 109.47169 * 185.12356 * 10 9 7 30 30 H 0.96998 * 120.00062 * 358.49050 * 11 10 9 31 31 H 0.96999 * 120.00718 * 359.97438 * 14 12 11 32 32 H 1.09009 * 109.46638 * 299.99747 * 15 14 12 33 33 H 1.08997 * 109.47154 * 59.99301 * 15 14 12 34 34 H 1.09005 * 109.46648 * 184.99722 * 16 15 14 35 35 H 1.08995 * 109.47120 * 304.99602 * 16 15 14 36 36 H 1.09006 * 117.49485 * 215.00160 * 25 9 7 37 37 H 1.08992 * 117.49885 * 0.02562 * 25 9 7 38 38 H 1.09009 * 117.49505 * 359.97438 * 26 9 7 39 39 H 1.08997 * 117.50195 * 144.96842 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4596 -2.0307 12 6 1.5606 -4.0381 -3.2219 13 8 0.4134 -4.2461 -3.5670 14 7 2.5812 -4.3860 -4.0304 15 6 2.3084 -5.0143 -5.3255 16 6 3.6298 -5.3053 -6.0396 17 8 4.3690 -6.2765 -5.2965 18 6 5.6271 -6.6208 -5.8803 19 9 5.4189 -7.1499 -7.1585 20 9 6.4265 -5.4766 -5.9738 21 6 6.3278 -7.6617 -5.0048 22 9 7.5592 -7.9992 -5.5766 23 9 6.5360 -7.1321 -3.7268 24 9 5.5286 -8.8061 -4.9108 25 6 1.7470 -3.4728 1.2180 26 6 0.4417 -2.7006 1.4249 27 1 -0.4851 0.8367 -0.0742 28 1 0.0755 -2.3471 -1.6470 29 1 0.1080 -3.9713 -0.9195 30 1 2.7267 -3.2937 -1.7553 31 1 3.4963 -4.2199 -3.7553 32 1 1.7660 -5.9470 -5.1698 33 1 1.7063 -4.3415 -5.9361 34 1 3.4257 -5.6905 -7.0387 35 1 4.2114 -4.3867 -6.1162 36 1 1.6726 -4.5379 0.9983 37 1 2.6081 -3.1750 1.8162 38 1 0.4446 -1.8950 2.1592 39 1 -0.4918 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872993708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:07 Heat of formation + Delta-G solvation = -303.100917 kcal Electronic energy + Delta-G solvation = -30990.949009 eV Core-core repulsion = 25576.632239 eV Total energy + Delta-G solvation = -5414.316770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.20326 -49.88541 -48.83530 -48.49171 -47.88343 -39.61090 -38.65759 -36.77754 -34.64179 -33.26334 -31.97326 -30.76481 -28.90444 -26.14472 -25.09697 -24.00123 -22.94735 -21.20757 -20.43845 -20.15310 -19.82754 -19.79379 -19.38789 -18.54793 -18.25181 -17.77841 -16.57608 -16.01059 -15.94347 -15.61956 -15.26153 -15.21087 -15.15928 -14.94735 -14.82783 -14.72404 -14.59239 -14.53400 -14.52835 -14.52568 -14.28540 -13.94877 -13.56899 -13.43392 -12.96271 -12.67401 -12.42492 -12.08967 -11.73330 -11.56265 -11.30937 -11.00675 -10.93370 -10.53081 -10.26341 -9.78833 -9.53429 -8.99398 -8.92312 -8.49518 -8.25930 -7.98848 -6.07831 -4.16413 0.77915 2.10547 2.42543 2.79364 2.85538 3.10428 3.24872 3.33054 3.34868 3.43402 3.75772 3.82342 4.30691 4.34628 4.53461 4.67908 4.85229 5.15842 5.20434 5.36318 5.58622 5.72192 6.03708 6.35243 6.47531 6.59726 6.63391 6.70819 6.84600 7.09556 7.30275 7.40212 7.46536 7.57257 7.81161 8.34380 8.61928 8.84220 9.15988 9.50247 10.99962 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002425 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.514548 B =11544.074599 C =11636.282029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.718 5.718 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.755 5.755 15 C 0.150 3.850 16 C 0.035 3.965 17 O -0.353 6.353 18 C 0.402 3.598 19 F -0.166 7.166 20 F -0.165 7.165 21 C 0.463 3.537 22 F -0.153 7.153 23 F -0.144 7.144 24 F -0.147 7.147 25 C -0.210 4.210 26 C -0.147 4.147 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.077 -14.361 -13.686 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.483 6.483 14 N -0.413 5.413 15 C 0.025 3.975 16 C -0.040 4.040 17 O -0.275 6.275 18 C 0.324 3.676 19 F -0.148 7.148 20 F -0.146 7.146 21 C 0.407 3.593 22 F -0.134 7.134 23 F -0.125 7.125 24 F -0.128 7.128 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.230 0.770 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.763 -14.487 -13.758 23.184 hybrid contribution 1.525 1.158 -0.030 1.915 sum 13.287 -13.329 -13.788 23.330 Atomic orbital electron populations 1.69973 1.05882 1.26914 1.48219 1.24981 0.94794 0.98922 0.94330 0.86637 0.79936 0.83589 0.78103 1.20722 1.21177 1.19836 1.20327 0.92789 0.88634 1.52017 0.92255 1.19039 0.98622 0.93898 0.85750 1.20862 0.86570 0.96671 0.90041 1.45143 1.11404 1.63403 1.17092 1.15987 0.84400 0.78830 0.80856 1.90878 1.19789 1.62075 1.75549 1.45019 1.08833 1.67918 1.19537 1.21082 0.92836 0.99149 0.84468 1.23385 0.93396 0.91066 0.96103 1.88509 1.27262 1.62073 1.49647 1.21991 0.84077 0.81888 0.79609 1.93221 1.94641 1.86215 1.40696 1.93236 1.74105 1.51231 1.96014 1.19741 0.78000 0.81532 0.80066 1.93326 1.43149 1.92566 1.84359 1.93351 1.94682 1.85738 1.38770 1.93332 1.72883 1.50629 1.95959 1.23022 0.98635 0.95702 1.07421 1.22490 0.92307 1.01072 1.02688 0.92851 0.91165 0.94695 0.77019 0.76977 0.90284 0.88926 0.89157 0.89915 0.91620 0.90396 0.89833 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 12.91 55.43 0.72 -23.40 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.74 8.63 -34.44 -0.30 -13.03 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.43 16 10 C 0.18 4.14 5.50 -4.04 -0.02 4.12 16 11 N -0.72 -13.88 5.48 -65.22 -0.36 -14.24 16 12 C 0.70 13.04 8.57 -86.92 -0.74 12.29 16 13 O -0.60 -13.53 16.34 5.29 0.09 -13.45 16 14 N -0.75 -10.12 5.51 -65.22 -0.36 -10.48 16 15 C 0.15 1.58 6.06 -4.04 -0.02 1.55 16 16 C 0.04 0.27 5.79 37.16 0.22 0.48 16 17 O -0.35 -3.19 10.11 -35.23 -0.36 -3.54 16 18 C 0.40 3.36 1.84 37.16 0.07 3.42 16 19 F -0.17 -1.33 16.57 2.25 0.04 -1.29 16 20 F -0.16 -1.38 16.56 2.25 0.04 -1.35 16 21 C 0.46 3.91 2.81 37.16 0.10 4.01 16 22 F -0.15 -1.23 17.28 2.25 0.04 -1.19 16 23 F -0.14 -1.34 17.24 2.25 0.04 -1.30 16 24 F -0.15 -1.31 17.24 2.25 0.04 -1.27 16 25 C -0.21 -4.36 9.96 -26.69 -0.27 -4.62 16 26 C -0.15 -3.35 9.42 -26.70 -0.25 -3.60 16 27 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 28 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 29 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.40 6.96 8.38 -40.82 -0.34 6.62 16 31 H 0.40 4.49 8.49 -40.82 -0.35 4.14 16 32 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.50 7.73 -51.93 -0.40 0.10 16 35 H 0.08 0.55 7.73 -51.93 -0.40 0.15 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 2.02 8.14 -51.92 -0.42 1.59 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -30.16 365.00 -5.55 -35.70 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.42 Total: 8.06 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.53 Total: 6.90 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.00 Total: -48.12 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.27 Total: -16.99 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.19 Total: -6.40 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.16 -5.55 -35.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872993708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.399 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds