Wall clock time and date at job start Wed Apr 1 2020 04:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 119.99629 * 2 1 4 4 C 1.50708 * 109.47248 * 274.99873 * 3 2 1 5 5 H 1.07996 * 119.99735 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99971 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00076 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99815 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.46924 * 60.00486 * 8 6 4 10 10 H 1.48501 * 109.46854 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47267 * 300.00305 * 8 6 4 12 12 S 1.65602 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.42094 * 106.40206 * 156.45725 * 12 2 1 14 14 O 1.42097 * 106.40085 * 23.53498 * 12 2 1 15 15 N 1.65598 * 107.21488 * 269.99883 * 12 2 1 16 16 C 1.47243 * 121.34758 * 269.97542 * 15 12 2 17 17 C 1.52784 * 107.88195 * 115.68492 * 16 15 12 18 18 C 1.50611 * 110.86043 * 47.46706 * 17 16 15 19 19 C 1.38992 * 117.56651 * 160.44150 * 18 17 16 20 20 C 1.38061 * 120.60594 * 179.38973 * 19 18 17 21 21 F 1.35099 * 120.12624 * 179.97438 * 20 19 18 22 22 C 1.38705 * 119.74597 * 0.02562 * 20 19 18 23 23 F 1.35095 * 120.17656 * 180.18541 * 22 20 19 24 24 C 1.38101 * 119.64019 * 0.38766 * 22 20 19 25 25 C 1.37688 * 122.86136 * 340.19178 * 18 17 16 26 26 C 1.46678 * 121.34990 * 89.99959 * 15 12 2 27 27 H 1.08996 * 109.47260 * 269.99603 * 1 2 3 28 28 H 1.08997 * 109.47213 * 29.99872 * 1 2 3 29 29 H 1.09005 * 109.47064 * 149.99629 * 1 2 3 30 30 H 1.08998 * 109.47578 * 35.00216 * 3 2 1 31 31 H 1.09002 * 109.47138 * 155.00475 * 3 2 1 32 32 H 0.97000 * 119.99761 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.77596 * 235.28315 * 16 15 12 34 34 H 1.08998 * 109.77506 * 356.08898 * 16 15 12 35 35 H 1.08998 * 109.20016 * 167.82048 * 17 16 15 36 36 H 1.09004 * 109.20418 * 287.15928 * 17 16 15 37 37 H 1.07998 * 119.70049 * 359.37755 * 19 18 17 38 38 H 1.08003 * 119.73253 * 179.75518 * 24 22 20 39 39 H 1.09005 * 109.43649 * 104.23592 * 26 15 12 40 40 H 1.08996 * 109.43857 * 344.36420 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9282 1.1939 -2.2332 6 6 2.9996 2.9510 -1.6664 7 7 3.5023 3.6476 -0.6705 8 14 3.1773 3.5673 -3.4208 9 1 1.8308 3.7727 -4.0120 10 1 3.9188 4.8540 -3.4206 11 1 3.9232 2.5656 -4.2242 12 16 2.2931 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4114 -2.4063 -0.5454 15 7 2.5381 -1.8593 1.5810 16 6 3.7408 -1.4276 2.3127 17 6 3.2943 -0.5080 3.4481 18 6 2.1428 -1.1132 4.2071 19 6 1.8918 -0.6318 5.4866 20 6 0.8444 -1.1331 6.2334 21 9 0.6096 -0.6585 7.4763 22 6 0.0347 -2.1266 5.7030 23 9 -0.9950 -2.6207 6.4246 24 6 0.2894 -2.6108 4.4350 25 6 1.3424 -2.1044 3.6849 26 6 1.5663 -2.6815 2.3095 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4342 32 1 3.9650 4.4816 -0.8471 33 1 4.2550 -2.2969 2.7225 34 1 4.4072 -0.8870 1.6405 35 1 4.1294 -0.3493 4.1303 36 1 2.9841 0.4507 3.0322 37 1 2.5221 0.1413 5.9006 38 1 -0.3378 -3.3872 4.0221 39 1 1.9477 -3.6986 2.4007 40 1 0.6226 -2.6962 1.7644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882746443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:38 Heat of formation + Delta-G solvation = -134.242685 kcal Electronic energy + Delta-G solvation = -29117.280618 eV Core-core repulsion = 24694.895702 eV Total energy + Delta-G solvation = -4422.384917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.63045 -48.71618 -40.11773 -36.81394 -36.42006 -35.54828 -35.26694 -33.08266 -32.47991 -30.91149 -29.44179 -27.81897 -25.38047 -25.02980 -23.89627 -23.08904 -22.32623 -20.76094 -18.63514 -17.99362 -17.65835 -17.16183 -16.99425 -16.56442 -16.49282 -16.37547 -15.77858 -15.13649 -15.02266 -14.77358 -14.63668 -14.53170 -14.26972 -14.04915 -13.51646 -13.43819 -13.34432 -12.97972 -12.81896 -12.34703 -12.26101 -12.19105 -11.99304 -11.70147 -11.57345 -11.42685 -11.23227 -11.19469 -11.11276 -10.91698 -10.76284 -10.54855 -10.08640 -9.82620 -9.32580 -9.02477 -8.68513 -8.48430 -8.12078 -6.11376 -4.15427 0.67964 0.73188 1.03997 3.05260 3.29152 3.31246 3.34598 3.39361 3.56942 3.95207 4.07809 4.21202 4.33896 4.40985 4.60159 4.73868 4.80814 4.92959 5.08469 5.20023 5.23791 5.30757 5.42066 5.48036 5.54193 5.54788 5.62222 5.68429 5.71674 5.94120 6.00527 6.02261 6.19939 6.32200 6.43723 6.52299 6.58407 7.14571 7.32980 7.53140 7.86017 8.14831 8.86611 9.50206 10.97039 Molecular weight = 346.09amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003466 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.235032 B = 8075.745927 C = 8730.632068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.994 5.994 3 C 0.259 3.741 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.781 3.219 13 O -0.956 6.956 14 O -0.993 6.993 15 N -1.014 6.014 16 C 0.121 3.879 17 C -0.104 4.104 18 C -0.036 4.036 19 C -0.127 4.127 20 C 0.067 3.933 21 F -0.131 7.131 22 C 0.062 3.938 23 F -0.131 7.131 24 C -0.121 4.121 25 C -0.073 4.073 26 C 0.168 3.832 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.087 0.913 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -11.187 13.245 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.137 3.863 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.790 3.210 13 O -0.940 6.940 14 O -0.977 6.977 15 N -0.851 5.851 16 C -0.005 4.005 17 C -0.143 4.143 18 C -0.037 4.037 19 C -0.145 4.145 20 C 0.047 3.953 21 F -0.109 7.109 22 C 0.042 3.958 23 F -0.109 7.109 24 C -0.140 4.140 25 C -0.074 4.074 26 C 0.042 3.958 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.105 0.895 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.242 -11.500 12.573 17.345 hybrid contribution -0.380 0.784 -0.021 0.871 sum -3.622 -10.716 12.552 16.897 Atomic orbital electron populations 1.21351 0.80114 1.03508 1.00187 1.57658 1.14354 1.23337 1.88342 1.19037 0.90833 0.78749 0.97689 1.21450 1.36291 1.06398 0.92899 0.92245 1.24909 0.95035 0.96430 0.97471 1.69897 1.37249 1.15310 1.30980 0.86585 0.78341 0.78029 0.84687 1.20182 1.21146 1.19959 1.02084 0.73561 0.72866 0.72521 1.93630 1.40463 1.84878 1.75022 1.93523 1.67350 1.60481 1.76365 1.58690 1.28966 1.65284 1.32144 1.21422 0.86513 0.98376 0.94141 1.20970 0.95587 1.00243 0.97452 1.19441 0.96747 0.94691 0.92814 1.21149 0.97340 1.01567 0.94483 1.17570 0.98185 0.97446 0.82066 1.91525 1.94052 1.87141 1.38219 1.17486 0.88786 0.97596 0.91929 1.91522 1.55838 1.86421 1.77151 1.20946 0.99103 1.01764 0.92222 1.19798 0.94464 0.96407 0.96772 1.20098 0.93358 0.94025 0.88346 0.94345 0.90319 0.91620 0.94782 0.94549 0.92609 0.90563 0.87526 0.88972 0.88416 0.83539 0.83423 0.89528 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 10.68 59.85 0.64 2.20 16 2 N -0.99 -19.45 3.23 -123.05 -0.40 -19.85 16 3 C 0.26 6.11 5.08 -5.19 -0.03 6.08 16 4 C -0.53 -14.40 9.38 -34.44 -0.32 -14.72 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -25.14 13.29 55.43 0.74 -24.41 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 12 S 2.78 51.57 6.10 -107.50 -0.66 50.92 16 13 O -0.96 -21.33 15.80 -57.17 -0.90 -22.23 16 14 O -0.99 -19.24 15.66 -57.17 -0.90 -20.13 16 15 N -1.01 -13.90 3.32 -115.02 -0.38 -14.28 16 16 C 0.12 1.44 6.46 -3.75 -0.02 1.42 16 17 C -0.10 -1.11 5.86 -28.04 -0.16 -1.27 16 18 C -0.04 -0.39 5.76 -104.59 -0.60 -0.99 16 19 C -0.13 -1.29 9.57 -39.37 -0.38 -1.66 16 20 C 0.07 0.76 7.30 -39.47 -0.29 0.48 16 21 F -0.13 -1.60 17.19 2.25 0.04 -1.56 16 22 C 0.06 0.69 7.31 -39.46 -0.29 0.40 16 23 F -0.13 -1.55 17.19 2.25 0.04 -1.51 16 24 C -0.12 -1.17 9.60 -39.41 -0.38 -1.55 16 25 C -0.07 -0.76 5.82 -104.54 -0.61 -1.37 16 26 C 0.17 1.83 6.09 -5.04 -0.03 1.80 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.07 1.01 7.02 -51.93 -0.36 0.65 16 30 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.04 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.44 7.04 -51.93 -0.37 1.08 16 35 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.15 1.22 8.05 -52.49 -0.42 0.80 16 38 H 0.15 1.08 8.05 -52.48 -0.42 0.66 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.06 7.42 -51.93 -0.39 0.68 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -32.42 355.16 -9.51 -41.93 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.85 Total: -2.97 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.57 Total: -7.52 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.04 Total: -58.54 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.80 Total: -42.37 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 51.57 SS G_CDS: -0.66 Total: 50.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -9.51 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882746443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.311 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds