Wall clock time and date at job start Wed Apr 1 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48498 * 109.47138 * 264.90647 * 3 2 1 5 5 H 1.48502 * 109.47179 * 24.90664 * 3 2 1 6 6 H 1.48507 * 109.47085 * 144.90804 * 3 2 1 7 7 C 1.37870 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99929 * 4.89444 * 7 2 1 9 9 C 1.50702 * 120.00135 * 184.89278 * 7 2 1 10 10 H 1.08996 * 109.47071 * 54.76838 * 9 7 2 11 11 N 1.46504 * 109.47077 * 294.76406 * 9 7 2 12 12 C 1.34773 * 119.99531 * 155.00264 * 11 9 7 13 13 O 1.21289 * 120.00422 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99823 * 180.02562 * 12 11 9 15 15 H 1.09003 * 110.88772 * 62.34938 * 14 12 11 16 16 C 1.54628 * 110.96816 * 298.54205 * 14 12 11 17 17 C 1.51283 * 104.19824 * 217.08380 * 16 14 12 18 18 O 1.21297 * 124.94473 * 196.27024 * 17 16 14 19 19 N 1.34426 * 110.11236 * 16.25258 * 17 16 14 20 20 C 1.40761 * 124.34788 * 180.40742 * 19 17 16 21 21 C 1.40246 * 126.08184 * 179.97438 * 20 19 17 22 22 N 1.30830 * 108.33752 * 180.02562 * 21 20 19 23 23 N 1.40070 * 108.36905 * 359.97438 * 22 21 20 24 24 H 0.96996 * 126.05308 * 179.97438 * 23 22 21 25 25 C 1.35763 * 126.07830 * 0.02562 * 20 19 17 26 26 C 1.46765 * 111.30139 * 0.67073 * 19 17 16 27 27 C 1.53004 * 109.47026 * 174.76551 * 9 7 2 28 28 F 1.39901 * 109.47137 * 185.01470 * 27 9 7 29 29 F 1.39898 * 109.47126 * 305.01872 * 27 9 7 30 30 F 1.39903 * 109.47208 * 65.01639 * 27 9 7 31 31 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00302 * 335.00045 * 11 9 7 33 33 H 1.09001 * 110.48543 * 98.40111 * 16 14 12 34 34 H 1.09009 * 110.48735 * 335.76452 * 16 14 12 35 35 H 1.08008 * 125.83183 * 0.03992 * 21 20 19 36 36 H 1.07993 * 126.21877 * 0.23170 * 25 20 19 37 37 H 1.09004 * 110.24316 * 101.72123 * 26 19 17 38 38 H 1.08993 * 110.24473 * 223.71961 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6042 1.9844 -1.3945 5 1 1.3968 2.6814 0.5896 6 1 3.4887 1.4738 0.8049 7 6 2.0046 -1.1939 -0.0005 8 1 1.4676 -2.1275 -0.0808 9 6 3.5075 -1.1963 0.1108 10 1 3.8069 -0.6407 0.9995 11 7 4.0862 -0.5649 -1.0779 12 6 5.3076 0.0011 -1.0130 13 8 5.9275 -0.0118 0.0294 14 6 5.9027 0.6510 -2.2355 15 1 5.2929 1.4927 -2.5640 16 6 6.0859 -0.3777 -3.3754 17 6 7.3837 0.0295 -4.0376 18 8 7.7485 -0.3367 -5.1350 19 7 8.0736 0.8565 -3.2331 20 6 9.3207 1.4228 -3.5577 21 6 10.0705 2.2884 -2.7482 22 7 11.1679 2.6026 -3.3876 23 7 11.1592 1.9496 -4.6267 24 1 11.8502 2.0035 -5.3053 25 6 10.0111 1.2290 -4.7105 26 6 7.3624 1.0880 -1.9704 27 6 4.0087 -2.6379 0.2177 28 9 5.3907 -2.6362 0.4356 29 9 3.3689 -3.2761 1.2856 30 9 3.7249 -3.3197 -0.9706 31 1 -0.4850 0.8400 0.0004 32 1 3.5904 -0.5543 -1.9114 33 1 5.2597 -0.3136 -4.0835 34 1 6.1645 -1.3865 -2.9699 35 1 9.7901 2.6361 -1.7648 36 1 9.7016 0.6163 -5.5443 37 1 7.8008 0.4856 -1.1747 38 1 7.3965 2.1450 -1.7066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455987708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:41 Heat of formation + Delta-G solvation = -141.559838 kcal Electronic energy + Delta-G solvation = -31196.910809 eV Core-core repulsion = 26240.288172 eV Total energy + Delta-G solvation = -4956.622637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.18816 -46.70574 -46.66757 -41.73997 -40.51491 -39.04652 -36.50175 -35.05452 -33.37269 -32.53531 -31.55145 -29.64578 -28.44725 -27.89330 -25.11976 -23.84542 -22.91014 -21.54974 -21.17690 -19.91513 -19.54248 -18.41628 -18.29575 -17.69766 -17.37187 -16.88251 -16.68000 -16.50149 -15.67506 -15.43056 -15.22620 -14.84610 -14.70513 -14.48303 -14.12146 -13.91475 -13.60689 -13.57752 -13.43188 -13.14401 -13.11468 -13.00682 -12.93248 -12.87251 -12.78356 -12.74936 -11.83029 -11.73139 -11.54575 -11.26757 -11.22220 -10.78417 -10.54967 -10.34006 -10.17671 -9.94723 -9.93436 -9.59779 -9.07842 -8.65035 -7.93448 -6.59573 -4.74293 1.52833 2.04029 2.31145 2.75315 2.86968 2.89612 2.97270 3.14852 3.17487 3.39608 3.77414 4.00761 4.04564 4.14716 4.59293 4.62047 4.67521 4.79135 4.84217 4.94668 5.06413 5.13634 5.23272 5.25694 5.32847 5.39682 5.46014 5.60175 5.76683 5.85228 6.27989 6.55939 6.77236 6.78945 6.89564 6.95379 7.32197 7.73175 7.91713 8.04874 8.41736 8.54599 8.93084 10.48772 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003398 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.033498 B = 8238.151236 C = 8893.418283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.095 3.905 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.539 4.539 8 H 0.096 0.904 9 C 0.204 3.796 10 H 0.094 0.906 11 N -0.712 5.712 12 C 0.511 3.489 13 O -0.530 6.530 14 C -0.129 4.129 15 H 0.121 0.879 16 C -0.141 4.141 17 C 0.521 3.479 18 O -0.525 6.525 19 N -0.535 5.535 20 C 0.011 3.989 21 C 0.043 3.957 22 N -0.279 5.279 23 N -0.475 5.475 24 H 0.444 0.556 25 C 0.040 3.960 26 C 0.118 3.882 27 C 0.442 3.558 28 F -0.194 7.194 29 F -0.182 7.182 30 F -0.189 7.189 31 H 0.276 0.724 32 H 0.403 0.597 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.189 0.811 36 H 0.192 0.808 37 H 0.101 0.899 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 3.938 -7.473 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.114 4.114 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.114 0.886 9 C 0.101 3.899 10 H 0.112 0.888 11 N -0.365 5.365 12 C 0.295 3.705 13 O -0.407 6.407 14 C -0.151 4.151 15 H 0.139 0.861 16 C -0.182 4.182 17 C 0.310 3.690 18 O -0.402 6.402 19 N -0.261 5.261 20 C -0.091 4.091 21 C -0.145 4.145 22 N -0.102 5.102 23 N -0.187 5.187 24 H 0.289 0.711 25 C -0.108 4.108 26 C -0.004 4.004 27 C 0.387 3.613 28 F -0.175 7.175 29 F -0.164 7.164 30 F -0.171 7.171 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.119 0.881 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.439 4.462 -7.230 17.622 hybrid contribution -0.406 0.214 -0.733 0.865 sum 15.032 4.676 -7.963 17.642 Atomic orbital electron populations 1.69862 1.06431 1.28403 1.44576 1.24939 0.94799 0.99323 0.92372 0.86845 0.80732 0.82629 0.79445 1.19557 1.21305 1.17979 1.20794 0.85810 0.96594 1.54505 0.88637 1.20344 0.96251 0.84352 0.88957 0.88830 1.47624 1.16897 1.56249 1.15750 1.20242 0.82235 0.78926 0.89067 1.90706 1.60549 1.58655 1.30777 1.22389 0.97232 1.00126 0.95350 0.86146 1.22327 0.96897 1.01062 0.97871 1.20874 0.86154 0.77597 0.84420 1.90657 1.73154 1.56710 1.19631 1.45244 1.16908 1.45435 1.18550 1.17599 0.89866 1.05235 0.96406 1.23732 0.91894 0.98146 1.00740 1.77272 1.20990 1.18800 0.93140 1.46140 1.18303 1.38440 1.15807 0.71086 1.22539 0.88188 0.99855 1.00214 1.22136 0.89738 1.03402 0.85114 1.21437 0.74407 0.92288 0.73164 1.93149 1.32565 1.97165 1.94658 1.93119 1.81906 1.84167 1.57200 1.93090 1.93369 1.82762 1.47893 0.91423 0.75993 0.86430 0.86570 0.79432 0.79142 0.88069 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.60 13.96 55.43 0.77 -21.83 16 2 C 0.10 2.33 5.47 -17.82 -0.10 2.23 16 3 Si 0.88 18.38 25.78 -169.99 -4.38 14.00 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.26 -5.45 6.57 56.52 0.37 -5.08 16 7 C -0.54 -12.87 8.65 -34.44 -0.30 -13.17 16 8 H 0.10 2.52 7.95 -52.49 -0.42 2.11 16 9 C 0.20 4.24 1.42 -69.08 -0.10 4.15 16 10 H 0.09 2.08 6.52 -51.93 -0.34 1.74 16 11 N -0.71 -12.48 2.83 -54.93 -0.16 -12.64 16 12 C 0.51 8.27 6.27 -10.99 -0.07 8.20 16 13 O -0.53 -10.08 14.14 5.55 0.08 -10.00 16 14 C -0.13 -1.54 3.56 -90.04 -0.32 -1.86 16 15 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.14 -1.58 6.37 -26.74 -0.17 -1.75 16 17 C 0.52 6.73 7.98 -10.86 -0.09 6.64 16 18 O -0.53 -7.94 15.64 5.54 0.09 -7.86 16 19 N -0.53 -6.37 3.16 -112.37 -0.36 -6.73 16 20 C 0.01 0.13 6.80 -83.89 -0.57 -0.44 16 21 C 0.04 0.46 11.53 -17.22 -0.20 0.27 16 22 N -0.28 -3.13 12.69 30.70 0.39 -2.74 16 23 N -0.47 -4.35 7.40 30.69 0.23 -4.12 16 24 H 0.44 2.50 8.96 -182.62 -1.64 0.86 16 25 C 0.04 0.43 11.18 -16.68 -0.19 0.25 16 26 C 0.12 1.32 6.23 -3.02 -0.02 1.31 16 27 C 0.44 8.98 2.79 37.16 0.10 9.09 16 28 F -0.19 -3.87 15.83 2.25 0.04 -3.84 16 29 F -0.18 -3.85 16.86 2.25 0.04 -3.81 16 30 F -0.19 -3.73 16.97 2.25 0.04 -3.69 16 31 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.40 6.36 8.58 -40.82 -0.35 6.01 16 33 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.35 7.89 -51.92 -0.41 0.94 16 35 H 0.19 1.54 8.06 -52.48 -0.42 1.11 16 36 H 0.19 1.99 6.51 -52.49 -0.34 1.65 16 37 H 0.10 1.25 7.07 -51.93 -0.37 0.88 16 38 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -30.39 338.55 -4.85 -35.24 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.72 Total: 7.99 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -2.01 Total: 14.91 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.88 Total: -48.05 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.86 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 0.11 Total: -11.34 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.38 Total: 14.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.39 -4.85 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455987708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.320 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds