Wall clock time and date at job start Wed Apr 1 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99870 * 2 1 4 4 C 1.38561 * 120.07303 * 0.29840 * 3 2 1 5 5 C 1.38248 * 119.99404 * 180.27546 * 4 3 2 6 6 C 1.50703 * 119.92553 * 179.69866 * 5 4 3 7 7 N 1.46900 * 109.47207 * 260.02590 * 6 5 4 8 8 C 1.46902 * 110.99763 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46858 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00096 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00140 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99488 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00348 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47016 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47125 * 120.00008 * 13 11 9 16 16 H 1.48491 * 109.47391 * 240.00212 * 13 11 9 17 17 C 1.38248 * 120.15039 * 359.72340 * 5 4 3 18 18 N 1.48005 * 119.93018 * 179.97438 * 17 5 4 19 19 O 1.21796 * 120.00416 * 179.97438 * 18 17 5 20 20 O 1.21798 * 119.99717 * 359.97438 * 18 17 5 21 21 C 1.38251 * 120.14400 * 359.97438 * 17 5 4 22 22 C 1.38562 * 120.00023 * 0.02660 * 21 17 5 23 23 O 1.35995 * 120.07494 * 180.02562 * 22 21 17 24 24 C 1.42903 * 116.99587 * 359.97438 * 23 22 21 25 25 C 1.53000 * 109.46726 * 180.02562 * 24 23 22 26 26 F 1.39904 * 109.47059 * 299.99479 * 25 24 23 27 27 F 1.39895 * 109.47411 * 59.99737 * 25 24 23 28 28 H 1.08998 * 109.47234 * 59.99942 * 1 2 3 29 29 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46964 * 299.99907 * 1 2 3 31 31 H 1.07993 * 120.00493 * 359.97438 * 4 3 2 32 32 H 1.09008 * 109.47057 * 20.02437 * 6 5 4 33 33 H 1.09000 * 109.47198 * 140.01825 * 6 5 4 34 34 H 1.00895 * 111.00009 * 56.04451 * 7 6 5 35 35 H 1.08993 * 109.47427 * 299.99836 * 8 7 6 36 36 H 1.09004 * 109.46785 * 60.00171 * 8 7 6 37 37 H 0.97008 * 119.99648 * 179.97438 * 12 11 9 38 38 H 1.07999 * 119.99484 * 180.02562 * 21 17 5 39 39 H 1.09002 * 109.47382 * 60.00075 * 24 23 22 40 40 H 1.09001 * 109.46938 * 300.00061 * 24 23 22 41 41 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0062 5 6 1.9225 3.6057 0.0005 6 6 1.1017 4.8696 0.0004 7 7 1.0308 5.4074 -1.3648 8 6 0.2361 6.6422 -1.4035 9 6 0.1864 7.1635 -2.8166 10 1 0.6940 6.6305 -3.6070 11 6 -0.5080 8.3202 -3.1008 12 7 -1.1266 8.9690 -2.1384 13 14 -0.5702 8.9660 -4.8525 14 1 0.2001 8.0598 -5.7417 15 1 -1.9822 9.0239 -5.3088 16 1 0.0214 10.3271 -4.8996 17 6 3.3030 3.6798 -0.0057 18 7 3.9716 5.0003 -0.0125 19 8 5.1877 5.0671 -0.0175 20 8 3.3056 6.0200 -0.0130 21 6 4.0603 2.5233 -0.0057 22 6 3.4360 1.2863 0.0000 23 8 4.1795 0.1476 0.0006 24 6 5.6003 0.3006 -0.0054 25 6 6.2618 -1.0790 -0.0044 26 9 5.8733 -1.7816 1.1413 27 9 5.8642 -1.7877 -1.1432 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2147 2.3197 0.0107 32 1 0.0954 4.6494 0.3569 33 1 1.5669 5.6050 0.6569 34 1 0.6623 4.7204 -2.0053 35 1 -0.7761 6.4340 -1.0569 36 1 0.6950 7.3901 -0.7567 37 1 -1.6148 9.7830 -2.3382 38 1 5.1386 2.5840 -0.0101 39 1 5.9101 0.8531 0.8816 40 1 5.9030 0.8477 -0.8983 41 1 7.3455 -0.9623 -0.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426004708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:51 Heat of formation + Delta-G solvation = -138.124076 kcal Electronic energy + Delta-G solvation = -30507.493592 eV Core-core repulsion = 25642.187495 eV Total energy + Delta-G solvation = -4865.306097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.37054 -47.39932 -41.97046 -40.93732 -39.11562 -37.87930 -36.22136 -35.07511 -32.67303 -31.70407 -31.24926 -30.15171 -28.12441 -27.29276 -25.73302 -24.65259 -23.60992 -22.26353 -21.83515 -21.39735 -19.67723 -18.53673 -18.41001 -17.98195 -17.81836 -17.35937 -17.12887 -16.77795 -16.46468 -16.45075 -16.05542 -15.69107 -15.13837 -14.89174 -14.53109 -14.24342 -14.13904 -13.78750 -13.74563 -13.67908 -13.33764 -12.98534 -12.77932 -12.48983 -12.27328 -11.88007 -11.75357 -11.66984 -11.57234 -11.53409 -11.20229 -11.02615 -10.72854 -10.66191 -10.62832 -10.21026 -9.92623 -9.38824 -9.17278 -8.48667 -8.45635 -7.36902 -6.01497 -4.02719 -0.01796 0.68077 1.52619 1.70272 2.28273 2.67952 3.03382 3.21210 3.32619 3.40220 3.45111 3.60964 3.88531 4.12741 4.21315 4.29726 4.36966 4.45837 4.48770 4.65619 4.76836 4.77760 4.81973 4.97437 5.07700 5.16058 5.32138 5.35263 5.41663 5.60327 5.79440 6.00069 6.14313 6.34635 6.75558 6.91220 7.21980 7.40045 7.77123 8.07348 8.11885 8.33997 8.55393 9.05287 9.61624 11.09674 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.002587 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.616561 B =10819.158889 C =11497.229579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.295 6.295 3 C 0.159 3.841 4 C -0.177 4.177 5 C 0.011 3.989 6 C 0.079 3.921 7 N -0.671 5.671 8 C 0.199 3.801 9 C -0.511 4.511 10 H 0.061 0.939 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.283 1.283 17 C -0.027 4.027 18 N 0.032 4.968 19 O -0.205 6.205 20 O -0.092 6.092 21 C -0.116 4.116 22 C 0.092 3.908 23 O -0.285 6.285 24 C -0.003 4.003 25 C 0.276 3.724 26 F -0.197 7.197 27 F -0.196 7.196 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.158 0.842 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.324 0.676 35 H -0.014 1.014 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.500 -22.372 7.951 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.207 6.207 3 C 0.111 3.889 4 C -0.197 4.197 5 C 0.008 3.992 6 C -0.050 4.050 7 N -0.302 5.302 8 C 0.073 3.927 9 C -0.550 4.550 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.209 1.209 17 C -0.112 4.112 18 N 0.551 4.449 19 O -0.407 6.407 20 O -0.322 6.322 21 C -0.136 4.136 22 C 0.045 3.955 23 O -0.199 6.199 24 C -0.079 4.079 25 C 0.223 3.777 26 F -0.178 7.178 27 F -0.177 7.177 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.175 0.825 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.004 0.996 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.178 0.822 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.779 -22.994 8.037 26.636 hybrid contribution -0.953 0.584 -0.848 1.403 sum 9.826 -22.410 7.189 25.503 Atomic orbital electron populations 1.23275 0.77282 1.04830 1.02181 1.86235 1.22124 1.24955 1.87364 1.18463 0.88946 0.85746 0.95724 1.21059 1.01140 0.89425 1.08033 1.19835 0.91112 0.96953 0.91250 1.21337 0.96067 0.91422 0.96216 1.60700 1.58902 1.08055 1.02519 1.19574 0.89533 0.85629 0.97953 1.21168 1.31381 1.08775 0.93652 0.92081 1.24957 0.95478 0.96652 0.97395 1.69970 1.34067 1.17790 1.31808 0.86441 0.77471 0.78911 0.84569 1.19754 1.21199 1.20911 1.20418 0.92259 0.83203 1.15290 1.43313 1.00713 1.02700 0.98136 1.94463 0.96300 1.93724 1.56257 1.94662 1.64205 1.23638 1.49647 1.20681 1.01703 0.89103 1.02130 1.17673 0.88116 0.85049 1.04623 1.86258 1.16854 1.27275 1.89468 1.24175 0.80821 0.97489 1.05452 1.21994 0.99046 0.84849 0.71839 1.93036 1.93252 1.80932 1.50619 1.93040 1.92999 1.80602 1.51095 0.91728 0.87478 0.91951 0.82459 0.94807 0.87420 0.85997 0.99623 0.94365 0.92972 0.82221 0.88436 0.88345 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.22 10.28 -34.24 -0.35 -3.57 16 3 C 0.16 1.86 6.70 -39.12 -0.26 1.59 16 4 C -0.18 -2.06 8.66 -39.46 -0.34 -2.40 16 5 C 0.01 0.16 5.39 -104.61 -0.56 -0.41 16 6 C 0.08 1.34 4.82 -4.97 -0.02 1.32 16 7 N -0.67 -14.06 5.72 -116.33 -0.67 -14.73 16 8 C 0.20 5.12 5.44 -4.97 -0.03 5.09 16 9 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 13 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C -0.03 -0.41 6.85 -79.95 -0.55 -0.96 16 18 N 0.03 0.57 4.45 33.96 0.15 0.72 16 19 O -0.21 -3.60 18.44 -29.46 -0.54 -4.15 16 20 O -0.09 -1.88 14.73 -29.46 -0.43 -2.32 16 21 C -0.12 -1.40 8.54 -39.46 -0.34 -1.73 16 22 C 0.09 1.07 6.70 -39.12 -0.26 0.81 16 23 O -0.28 -3.13 9.81 -34.23 -0.34 -3.47 16 24 C 0.00 -0.02 4.97 37.16 0.18 0.16 16 25 C 0.28 1.69 5.63 37.16 0.21 1.90 16 26 F -0.20 -1.76 17.28 2.25 0.04 -1.72 16 27 F -0.20 -1.80 17.28 2.25 0.04 -1.77 16 28 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 29 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.16 1.46 6.27 -52.49 -0.33 1.14 16 32 H 0.03 0.53 8.00 -51.92 -0.42 0.11 16 33 H 0.11 1.98 5.87 -51.93 -0.30 1.67 16 34 H 0.32 6.42 8.71 -39.29 -0.34 6.08 16 35 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 16 36 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.16 1.54 5.85 -52.49 -0.31 1.24 16 39 H 0.10 0.46 7.66 -51.93 -0.40 0.07 16 40 H 0.10 0.51 7.66 -51.93 -0.40 0.11 16 41 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -35.16 364.47 -6.82 -41.98 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.53 Total: -0.60 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.40 Total: -6.72 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.22 Total: -39.95 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.67 Total: -13.50 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.16 -6.82 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426004708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.147 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds