Wall clock time and date at job start Wed Apr 1 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34562 * 119.18446 * 2 1 4 4 C 1.46904 * 118.64579 * 180.22586 * 3 2 1 5 5 N 1.31794 * 121.29145 * 179.76419 * 4 3 2 6 6 C 1.46503 * 119.99931 * 188.51700 * 5 4 3 7 7 H 1.09004 * 110.88273 * 30.85323 * 6 5 4 8 8 C 1.55161 * 111.00378 * 266.97614 * 6 5 4 9 9 C 1.54328 * 102.93887 * 206.42195 * 8 6 5 10 10 N 1.47018 * 107.27302 * 22.19394 * 9 8 6 11 11 C 1.34778 * 125.65029 * 181.02368 * 10 9 8 12 12 O 1.21281 * 120.00080 * 180.02562 * 11 10 9 13 13 C 1.50705 * 119.99800 * 0.02562 * 11 10 9 14 14 S 1.80995 * 109.47162 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00088 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99675 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99778 * 0.27090 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47366 * 120.00241 * 19 17 15 22 22 H 1.48510 * 109.46751 * 239.99707 * 19 17 15 23 23 C 1.47422 * 108.70430 * 1.28630 * 10 9 8 24 24 C 1.47849 * 117.41110 * 359.49327 * 4 3 2 25 25 C 1.43193 * 120.88719 * 180.22996 * 24 4 3 26 26 N 4.93632 * 133.65246 * 359.95770 * 3 1 2 27 27 C 1.36591 * 118.22632 * 0.24642 * 24 4 3 28 28 N 1.35150 * 121.06961 * 359.97438 * 27 24 4 29 29 H 0.96996 * 118.49093 * 180.02562 * 28 27 24 30 30 H 1.09000 * 109.46913 * 270.31251 * 1 2 3 31 31 H 1.08997 * 109.47443 * 30.31786 * 1 2 3 32 32 H 1.08999 * 109.47112 * 150.31744 * 1 2 3 33 33 H 1.07994 * 120.67919 * 359.96940 * 3 2 1 34 34 H 1.08997 * 110.72197 * 88.06068 * 8 6 5 35 35 H 1.08998 * 110.71958 * 324.78408 * 8 6 5 36 36 H 1.08997 * 109.88109 * 262.77103 * 9 8 6 37 37 H 1.09001 * 109.87828 * 141.61458 * 9 8 6 38 38 H 1.09008 * 109.46888 * 60.00355 * 13 11 10 39 39 H 1.08998 * 109.46928 * 300.00415 * 13 11 10 40 40 H 0.96996 * 120.00388 * 359.73218 * 18 17 15 41 41 H 1.09000 * 110.37071 * 94.48305 * 23 10 9 42 42 H 1.09005 * 110.37114 * 216.81144 * 23 10 9 43 43 H 1.08001 * 119.46553 * 179.97438 * 27 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1631 1.1748 0.0000 4 6 3.6321 1.1610 -0.0051 5 7 4.3272 2.2807 -0.0100 6 6 5.7789 2.2409 -0.2028 7 1 6.0641 1.3985 -0.8331 8 6 6.5198 2.1921 1.1596 9 6 7.8877 2.8271 0.8320 10 7 7.7095 3.6502 -0.3731 11 6 8.6764 4.3558 -0.9925 12 8 8.4142 5.0029 -1.9842 13 6 10.0834 4.3407 -0.4527 14 16 11.1404 5.3767 -1.4946 15 6 12.6793 5.1816 -0.6589 16 1 12.7402 4.5602 0.2224 17 6 13.8130 5.8273 -1.1325 18 7 13.7374 6.5896 -2.2029 19 14 15.4446 5.6198 -0.2469 20 1 15.2624 4.7235 0.9230 21 1 16.4399 5.0264 -1.1755 22 1 15.9284 6.9453 0.2161 23 6 6.2966 3.5810 -0.7881 24 6 4.3004 -0.1578 0.0017 25 6 5.7288 -0.2580 0.0023 26 7 6.8621 -0.3376 0.0026 27 6 3.5189 -1.2781 0.0070 28 7 2.1704 -1.1878 0.0067 29 1 1.6518 -2.0074 0.0110 30 1 -0.3633 0.0056 1.0277 31 1 -0.3634 0.8871 -0.5187 32 1 -0.3633 -0.8928 -0.5089 33 1 1.6209 2.1088 -0.0005 34 1 6.6431 1.1623 1.4949 35 1 5.9902 2.7817 1.9079 36 1 8.6232 2.0455 0.6417 37 1 8.2146 3.4522 1.6629 38 1 10.4619 3.3184 -0.4535 39 1 10.0860 4.7283 0.5660 40 1 12.8902 6.6971 -2.6629 41 1 5.7378 4.4199 -0.3733 42 1 6.2205 3.5740 -1.8755 43 1 3.9862 -2.2518 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095020249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:50 Heat of formation + Delta-G solvation = 66.857448 kcal Electronic energy + Delta-G solvation = -26464.269047 eV Core-core repulsion = 22637.126768 eV Total energy + Delta-G solvation = -3827.142279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05990 -39.79794 -38.16087 -36.51294 -35.32507 -33.82812 -32.45312 -32.04281 -30.12224 -29.55848 -28.79563 -27.36419 -24.78046 -24.44098 -23.27245 -22.35957 -20.69339 -20.43711 -19.21218 -18.15468 -17.72900 -17.17891 -16.91486 -16.53032 -15.61319 -15.54686 -15.18283 -14.80992 -14.45562 -14.08445 -14.02886 -13.80008 -13.72464 -13.52657 -13.50208 -13.24557 -13.16446 -12.82650 -12.68404 -12.55378 -12.38526 -12.36075 -12.23322 -11.74817 -11.73396 -11.49254 -11.05123 -10.84376 -10.75721 -10.15203 -9.99769 -9.50370 -9.38553 -9.29380 -8.93976 -8.39129 -8.12997 -7.81759 -6.58398 -6.55307 -3.91945 0.40044 0.85350 2.07862 2.43869 2.52581 2.90769 3.11120 3.29214 3.38563 3.45636 3.50597 3.55157 3.61404 3.73908 3.90708 4.18391 4.30599 4.49638 4.55790 4.60381 4.66445 4.74850 4.75373 4.93848 5.08965 5.17034 5.22527 5.26829 5.29415 5.30465 5.51806 5.58264 5.62429 5.71224 5.82326 5.91401 5.96305 6.01686 6.03796 6.14179 6.25372 6.40966 6.52748 7.23672 7.66378 7.77161 8.01281 8.57576 8.60368 9.34821 10.88897 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.001938 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.265715 B =14443.756834 C =15002.199163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.121 3.879 3 C -0.155 4.155 4 C 0.253 3.747 5 N -0.534 5.534 6 C 0.046 3.954 7 H 0.079 0.921 8 C -0.133 4.133 9 C 0.107 3.893 10 N -0.623 5.623 11 C 0.548 3.452 12 O -0.518 6.518 13 C -0.123 4.123 14 S -0.117 6.117 15 C -0.605 4.605 16 H 0.066 0.934 17 C 0.034 3.966 18 N -0.886 5.886 19 Si 1.091 2.909 20 H -0.288 1.288 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.132 3.868 24 C -0.185 4.185 25 C 0.265 3.735 26 N -0.414 5.414 27 C 0.209 3.791 28 N -0.597 5.597 29 H 0.420 0.580 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.278 0.722 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.913 -22.673 9.028 41.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.015 3.985 3 C -0.180 4.180 4 C 0.071 3.929 5 N -0.247 5.247 6 C -0.066 4.066 7 H 0.097 0.903 8 C -0.172 4.172 9 C -0.017 4.017 10 N -0.361 5.361 11 C 0.337 3.663 12 O -0.393 6.393 13 C -0.274 4.274 14 S 0.110 5.890 15 C -0.754 4.754 16 H 0.084 0.916 17 C -0.176 4.176 18 N -0.521 5.521 19 Si 0.917 3.083 20 H -0.214 1.214 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.009 3.991 24 C -0.201 4.201 25 C -0.048 4.048 26 N -0.091 5.091 27 C 0.073 3.927 28 N -0.203 5.203 29 H 0.256 0.744 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.173 0.827 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -30.888 -20.204 7.536 37.671 hybrid contribution -1.320 -2.445 1.394 3.109 sum -32.208 -22.649 8.930 40.374 Atomic orbital electron populations 1.20983 0.87749 1.04759 1.04153 1.20036 0.94580 0.85113 0.98731 1.21367 0.90487 0.97094 1.09011 1.21276 0.92930 0.86437 0.92272 1.72822 1.06254 1.25420 1.20215 1.23197 0.88375 0.98227 0.96810 0.90327 1.23073 0.95047 1.01837 0.97197 1.21920 0.97566 0.94358 0.87831 1.48395 1.08974 1.49473 1.29258 1.19953 0.85555 0.77848 0.82979 1.90696 1.82220 1.41272 1.25064 1.23285 0.94284 1.05413 1.04427 1.84779 1.04195 1.61425 1.38646 1.23770 0.94954 1.38937 1.17702 0.91565 1.26057 1.02569 0.92654 0.96319 1.70724 1.29723 1.34511 1.17109 0.83245 0.73668 0.76418 0.74967 1.21423 1.20904 1.20889 1.21871 0.81046 0.96139 1.00060 1.17070 0.85533 0.94984 1.22527 1.24712 0.92026 0.93936 0.94113 1.81423 1.11217 1.06997 1.09502 1.21527 0.82682 0.99283 0.89218 1.40783 1.05094 1.09033 1.65358 0.74358 0.89530 0.88843 0.90692 0.82661 0.90231 0.89969 0.91108 0.91199 0.89081 0.89065 0.90914 0.90642 0.90648 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.03 36.00 0.36 0.51 16 2 C 0.12 0.20 6.80 -82.02 -0.56 -0.36 16 3 C -0.15 -0.80 9.84 -37.38 -0.37 -1.17 16 4 C 0.25 2.25 6.99 -80.44 -0.56 1.69 16 5 N -0.53 -6.58 10.41 -46.95 -0.49 -7.07 16 6 C 0.05 0.64 2.67 -65.66 -0.18 0.46 16 7 H 0.08 1.17 4.60 -51.93 -0.24 0.93 16 8 C -0.13 -1.75 5.83 -24.89 -0.15 -1.90 16 9 C 0.11 1.62 6.48 -3.06 -0.02 1.61 16 10 N -0.62 -11.48 3.32 -170.38 -0.57 -12.04 16 11 C 0.55 12.35 7.87 -10.98 -0.09 12.27 16 12 O -0.52 -13.47 16.12 5.56 0.09 -13.38 16 13 C -0.12 -2.88 5.35 36.01 0.19 -2.69 16 14 S -0.12 -3.40 19.60 -107.50 -2.11 -5.51 16 15 C -0.61 -18.51 9.50 30.94 0.29 -18.22 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 17 C 0.03 1.04 5.49 -17.43 -0.10 0.95 16 18 N -0.89 -28.73 13.67 55.49 0.76 -27.97 16 19 Si 1.09 26.29 29.92 -169.99 -5.09 21.20 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 2.20 6.61 -2.41 -0.02 2.19 16 24 C -0.19 -1.33 5.86 -104.64 -0.61 -1.94 16 25 C 0.27 2.75 10.10 -22.48 -0.23 2.52 16 26 N -0.41 -5.41 15.92 41.84 0.67 -4.74 16 27 C 0.21 0.46 10.86 -16.69 -0.18 0.28 16 28 N -0.60 -0.04 5.19 -9.12 -0.05 -0.08 16 29 H 0.42 -1.51 8.69 -40.82 -0.35 -1.87 16 30 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 31 H 0.09 -0.10 8.06 -51.93 -0.42 -0.52 16 32 H 0.07 -0.20 8.12 -51.93 -0.42 -0.62 16 33 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.08 1.00 5.41 -51.93 -0.28 0.72 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 2.03 8.14 -51.91 -0.42 1.61 16 39 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 40 H 0.28 9.24 7.12 -40.82 -0.29 8.95 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 43 H 0.17 -0.19 8.06 -52.49 -0.42 -0.61 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -42.54 376.69 -8.74 -51.28 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.43 Total: -3.55 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.20 Total: -3.81 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.32 Total: -51.91 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.20 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.11 Total: -5.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -42.54 -8.74 -51.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095020249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.137 kcal (2) G-P(sol) polarization free energy of solvation -42.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds