Wall clock time and date at job start Wed Apr 1 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34562 * 119.18446 * 2 1 4 4 C 1.46904 * 118.64579 * 180.22586 * 3 2 1 5 5 N 1.31794 * 121.29145 * 179.76419 * 4 3 2 6 6 C 1.46503 * 119.99931 * 188.51700 * 5 4 3 7 7 H 1.09004 * 110.88273 * 30.85323 * 6 5 4 8 8 C 1.55161 * 111.00378 * 266.97614 * 6 5 4 9 9 C 1.54328 * 102.93887 * 206.42195 * 8 6 5 10 10 N 1.47018 * 107.27302 * 22.19394 * 9 8 6 11 11 C 1.34778 * 125.65029 * 181.02368 * 10 9 8 12 12 O 1.21281 * 120.00080 * 180.02562 * 11 10 9 13 13 C 1.50705 * 119.99800 * 0.02562 * 11 10 9 14 14 S 1.80995 * 109.47162 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00088 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99675 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99778 * 0.27090 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47282 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47366 * 120.00241 * 19 17 15 22 22 H 1.48510 * 109.46751 * 239.99707 * 19 17 15 23 23 C 1.47422 * 108.70430 * 1.28630 * 10 9 8 24 24 C 1.47849 * 117.41110 * 359.49327 * 4 3 2 25 25 C 1.43193 * 120.88719 * 180.22996 * 24 4 3 26 26 N 4.93632 * 133.65246 * 359.95770 * 3 1 2 27 27 C 1.36591 * 118.22632 * 0.24642 * 24 4 3 28 28 N 1.35150 * 121.06961 * 359.97438 * 27 24 4 29 29 H 0.96996 * 118.49093 * 180.02562 * 28 27 24 30 30 H 1.09000 * 109.46913 * 270.31251 * 1 2 3 31 31 H 1.08997 * 109.47443 * 30.31786 * 1 2 3 32 32 H 1.08999 * 109.47112 * 150.31744 * 1 2 3 33 33 H 1.07994 * 120.67919 * 359.96940 * 3 2 1 34 34 H 1.08997 * 110.72197 * 88.06068 * 8 6 5 35 35 H 1.08998 * 110.71958 * 324.78408 * 8 6 5 36 36 H 1.08997 * 109.88109 * 262.77103 * 9 8 6 37 37 H 1.09001 * 109.87828 * 141.61458 * 9 8 6 38 38 H 1.09008 * 109.46888 * 60.00355 * 13 11 10 39 39 H 1.08998 * 109.46928 * 300.00415 * 13 11 10 40 40 H 0.96996 * 120.00388 * 359.73218 * 18 17 15 41 41 H 1.09000 * 110.37071 * 94.48305 * 23 10 9 42 42 H 1.09005 * 110.37114 * 216.81144 * 23 10 9 43 43 H 1.08001 * 119.46553 * 179.97438 * 27 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1631 1.1748 0.0000 4 6 3.6321 1.1610 -0.0051 5 7 4.3272 2.2807 -0.0100 6 6 5.7789 2.2409 -0.2028 7 1 6.0641 1.3985 -0.8331 8 6 6.5198 2.1921 1.1596 9 6 7.8877 2.8271 0.8320 10 7 7.7095 3.6502 -0.3731 11 6 8.6764 4.3558 -0.9925 12 8 8.4142 5.0029 -1.9842 13 6 10.0834 4.3407 -0.4527 14 16 11.1404 5.3767 -1.4946 15 6 12.6793 5.1816 -0.6589 16 1 12.7402 4.5602 0.2224 17 6 13.8130 5.8273 -1.1325 18 7 13.7374 6.5896 -2.2029 19 14 15.4446 5.6198 -0.2469 20 1 15.2624 4.7235 0.9230 21 1 16.4399 5.0264 -1.1755 22 1 15.9284 6.9453 0.2161 23 6 6.2966 3.5810 -0.7881 24 6 4.3004 -0.1578 0.0017 25 6 5.7288 -0.2580 0.0023 26 7 6.8621 -0.3376 0.0026 27 6 3.5189 -1.2781 0.0070 28 7 2.1704 -1.1878 0.0067 29 1 1.6518 -2.0074 0.0110 30 1 -0.3633 0.0056 1.0277 31 1 -0.3634 0.8871 -0.5187 32 1 -0.3633 -0.8928 -0.5089 33 1 1.6209 2.1088 -0.0005 34 1 6.6431 1.1623 1.4949 35 1 5.9902 2.7817 1.9079 36 1 8.6232 2.0455 0.6417 37 1 8.2146 3.4522 1.6629 38 1 10.4619 3.3184 -0.4535 39 1 10.0860 4.7283 0.5660 40 1 12.8902 6.6971 -2.6629 41 1 5.7378 4.4199 -0.3733 42 1 6.2205 3.5740 -1.8755 43 1 3.9862 -2.2518 0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095020249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:49 Heat of formation + Delta-G solvation = 34.178232 kcal Electronic energy + Delta-G solvation = -26465.686124 eV Core-core repulsion = 22637.126768 eV Total energy + Delta-G solvation = -3828.559357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59604 -41.10960 -39.34153 -37.64788 -36.09618 -34.80151 -34.08850 -33.17940 -31.26440 -30.91668 -29.41297 -28.27173 -27.11693 -24.88266 -24.49867 -23.17217 -21.32324 -21.09065 -20.96586 -20.18826 -18.45985 -18.17091 -18.01108 -17.30506 -16.99198 -16.81660 -16.05922 -15.90793 -15.72358 -15.69316 -15.12156 -15.00579 -14.76762 -14.64995 -14.44079 -14.16975 -14.07204 -13.94052 -13.77528 -13.57573 -13.55197 -13.30965 -13.11172 -13.08396 -12.96587 -12.79028 -12.50840 -12.05419 -11.96342 -11.64322 -11.60153 -11.23861 -11.15971 -10.40746 -10.31070 -10.07947 -9.89754 -8.98861 -8.95630 -8.37141 -6.34678 0.00826 0.44839 1.01822 1.30593 1.46932 1.57522 1.58954 1.75474 1.82825 1.92173 2.00774 2.28118 2.69674 2.97078 2.99385 3.01665 3.22001 3.33816 3.44787 3.61475 3.70893 3.78996 3.94557 3.96658 4.05218 4.18322 4.19955 4.31714 4.37882 4.41666 4.54916 4.61393 4.66391 4.75385 4.87217 4.89714 4.98663 5.04123 5.24869 5.36817 5.41357 5.58737 5.93181 6.08830 6.14624 6.32216 6.56111 6.84465 7.00701 7.04281 8.44622 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.001938 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.265715 B =14443.756834 C =15002.199163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.159 3.841 3 C -0.193 4.193 4 C 0.261 3.739 5 N -0.597 5.597 6 C 0.067 3.933 7 H 0.064 0.936 8 C -0.120 4.120 9 C 0.101 3.899 10 N -0.615 5.615 11 C 0.546 3.454 12 O -0.564 6.564 13 C -0.099 4.099 14 S -0.188 6.188 15 C -0.615 4.615 16 H 0.073 0.927 17 C -0.018 4.018 18 N -0.910 5.910 19 Si 1.144 2.856 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.271 1.271 23 C 0.129 3.871 24 C -0.242 4.242 25 C 0.287 3.713 26 N -0.479 5.479 27 C 0.262 3.738 28 N -0.569 5.569 29 H 0.447 0.553 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.909 -26.675 11.268 46.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.218 4.218 4 C 0.084 3.916 5 N -0.314 5.314 6 C -0.045 4.045 7 H 0.081 0.919 8 C -0.159 4.159 9 C -0.022 4.022 10 N -0.349 5.349 11 C 0.334 3.666 12 O -0.443 6.443 13 C -0.250 4.250 14 S 0.039 5.961 15 C -0.763 4.763 16 H 0.091 0.909 17 C -0.221 4.221 18 N -0.545 5.545 19 Si 0.962 3.038 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.196 1.196 23 C 0.006 3.994 24 C -0.258 4.258 25 C -0.024 4.024 26 N -0.159 5.159 27 C 0.122 3.878 28 N -0.174 5.174 29 H 0.289 0.711 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.172 0.828 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -34.005 -24.297 9.809 42.929 hybrid contribution -0.879 -1.509 0.710 1.886 sum -34.884 -25.806 10.519 44.649 Atomic orbital electron populations 1.21153 0.84778 1.06250 1.05535 1.20458 0.96129 0.84337 0.93900 1.21416 0.88733 0.98862 1.12770 1.21867 0.94436 0.86543 0.88763 1.72844 1.04272 1.27152 1.27128 1.22813 0.90550 0.95095 0.96078 0.91869 1.23002 0.93548 1.01967 0.97365 1.22177 0.99157 0.94156 0.86708 1.48361 1.09022 1.47992 1.29564 1.19775 0.85900 0.78159 0.82743 1.90669 1.82859 1.43635 1.27103 1.23131 0.93645 1.04553 1.03696 1.84998 1.06073 1.63658 1.41385 1.24079 0.95339 1.39015 1.17851 0.90850 1.27938 1.06797 0.91341 0.96058 1.70851 1.28765 1.36368 1.18563 0.82632 0.69030 0.77492 0.74689 1.18910 1.19677 1.19596 1.21986 0.79917 0.98511 0.99035 1.17084 0.84507 0.95906 1.28305 1.25180 0.92611 0.92312 0.92267 1.81418 1.12951 1.08809 1.12676 1.22065 0.82904 0.99504 0.83307 1.41098 1.04805 1.10033 1.61512 0.71116 0.87947 0.88747 0.87938 0.82754 0.89495 0.89459 0.91303 0.89697 0.87840 0.87256 0.92876 0.90785 0.92756 0.76758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.92 10.03 71.23 0.71 1.63 16 2 C 0.16 -0.18 6.80 41.06 0.28 0.09 16 3 C -0.19 -1.63 9.84 23.70 0.23 -1.40 16 4 C 0.26 4.51 6.99 43.97 0.31 4.82 16 5 N -0.60 -15.40 10.41 -302.44 -3.15 -18.55 16 6 C 0.07 1.98 2.67 46.46 0.12 2.10 16 7 H 0.06 2.01 4.60 -2.39 -0.01 2.00 16 8 C -0.12 -3.25 5.83 31.79 0.19 -3.07 16 9 C 0.10 3.12 6.48 86.73 0.56 3.68 16 10 N -0.61 -23.72 3.32 -811.34 -2.70 -26.41 16 11 C 0.55 25.79 7.87 87.66 0.69 26.48 16 12 O -0.56 -31.19 16.12 -3.03 -0.05 -31.24 16 13 C -0.10 -4.75 5.35 71.24 0.38 -4.37 16 14 S -0.19 -11.41 19.60 -56.49 -1.11 -12.52 16 15 C -0.62 -38.17 9.50 67.95 0.65 -37.53 16 16 H 0.07 4.32 7.80 -2.91 -0.02 4.30 16 17 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 18 N -0.91 -60.49 13.67 21.65 0.30 -60.20 16 19 Si 1.14 52.25 29.92 68.60 2.05 54.30 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.13 4.61 6.61 86.93 0.57 5.18 16 24 C -0.24 -3.04 5.86 -19.87 -0.12 -3.16 16 25 C 0.29 5.90 10.10 88.33 0.89 6.79 16 26 N -0.48 -12.88 15.92 19.00 0.30 -12.58 16 27 C 0.26 -0.11 10.86 83.80 0.91 0.80 16 28 N -0.57 3.26 5.19 -182.76 -0.95 2.32 16 29 H 0.45 -6.52 8.69 -92.71 -0.81 -7.32 16 30 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H 0.09 -0.59 8.06 -2.39 -0.02 -0.61 16 32 H 0.10 -1.23 8.12 -2.39 -0.02 -1.25 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.09 2.24 5.41 -2.39 -0.01 2.22 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.10 4.69 8.14 -2.39 -0.02 4.67 16 39 H 0.11 4.82 8.14 -2.40 -0.02 4.80 16 40 H 0.26 18.06 7.12 -92.71 -0.66 17.40 16 41 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.05 2.13 8.04 -2.38 -0.02 2.11 16 43 H 0.22 -1.85 8.06 -2.91 -0.02 -1.87 16 Total: -1.00 -101.73 376.69 1.92 -99.81 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.37 Total: 3.65 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 6.85 Total: 1.41 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -6.19 Total: -115.42 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Atomic # 16 Polarization: -11.41 SS G_CDS: -1.11 Total: -12.52 kcal Total: -101.73 1.92 -99.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095020249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.990 kcal (2) G-P(sol) polarization free energy of solvation -101.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds