Wall clock time and date at job start Wed Apr 1 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48512 * 109.46980 * 269.99911 * 3 2 1 5 5 H 1.48498 * 109.47138 * 29.99499 * 3 2 1 6 6 H 1.48497 * 109.47448 * 150.00083 * 3 2 1 7 7 C 1.38810 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99885 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99793 * 184.35808 * 9 7 2 11 11 H 1.09002 * 109.47089 * 184.54524 * 10 9 7 12 12 C 1.52997 * 109.47471 * 304.54613 * 10 9 7 13 13 N 1.46499 * 109.47133 * 305.00210 * 12 10 9 14 14 C 1.34774 * 120.00436 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99592 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00290 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46987 * 180.02562 * 16 14 13 18 18 H 1.09001 * 110.53633 * 57.83274 * 17 16 14 19 19 N 1.47315 * 110.59830 * 294.99840 * 17 16 14 20 20 C 1.34531 * 106.61790 * 241.31800 * 19 17 16 21 21 O 1.21540 * 123.76936 * 179.97438 * 20 19 17 22 22 N 1.33795 * 112.45966 * 0.27020 * 20 19 17 23 23 C 1.34777 * 111.64296 * 359.53296 * 22 20 19 24 24 O 1.21221 * 127.15777 * 180.14357 * 23 22 20 25 25 C 1.50705 * 109.46971 * 64.54657 * 10 9 7 26 26 C 1.38240 * 119.99790 * 212.99669 * 25 10 9 27 27 C 1.38234 * 119.99752 * 179.79051 * 26 25 10 28 28 C 1.38232 * 119.99950 * 0.43570 * 27 26 25 29 29 C 1.38237 * 120.00147 * 359.81802 * 28 27 26 30 30 C 1.38232 * 120.00055 * 359.97438 * 29 28 27 31 31 H 0.96999 * 120.00364 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00103 * 4.36419 * 9 7 2 33 33 H 1.08999 * 109.47402 * 185.00251 * 12 10 9 34 34 H 1.09008 * 109.47208 * 64.99774 * 12 10 9 35 35 H 0.97006 * 120.00138 * 0.02562 * 13 12 10 36 36 H 1.08999 * 109.46957 * 60.00084 * 16 14 13 37 37 H 1.08999 * 109.47070 * 300.00137 * 16 14 13 38 38 H 0.96991 * 126.68817 * 61.30312 * 19 17 16 39 39 H 0.96999 * 124.17749 * 179.69372 * 22 20 19 40 40 H 1.08003 * 119.99817 * 0.02562 * 26 25 10 41 41 H 1.07999 * 119.99966 * 180.27960 * 27 26 25 42 42 H 1.08004 * 120.00181 * 179.83698 * 28 27 26 43 43 H 1.08005 * 119.99996 * 179.97438 * 29 28 27 44 44 H 1.07999 * 120.00188 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1121 -2.4672 -0.0958 11 1 5.1810 -2.2763 -0.0002 12 6 3.6592 -3.4050 1.0250 13 7 3.8189 -2.7340 2.3175 14 6 3.4804 -3.3729 3.4549 15 8 3.0441 -4.5037 3.4084 16 6 3.6452 -2.6829 4.7845 17 6 3.1922 -3.6207 5.9053 18 1 3.7621 -4.5495 5.8804 19 7 1.7487 -3.8951 5.7997 20 6 1.1859 -3.4357 6.9319 21 8 -0.0038 -3.5040 7.1710 22 7 2.0813 -2.8895 7.7627 23 6 3.3290 -2.9472 7.2564 24 8 4.3478 -2.5400 7.7718 25 6 3.8339 -3.1088 -1.4308 26 6 3.7946 -4.4862 -1.5408 27 6 3.5351 -5.0747 -2.7645 28 6 3.3239 -4.2859 -3.8798 29 6 3.3684 -2.9086 -3.7708 30 6 3.6236 -2.3200 -2.5464 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3644 0.0632 33 1 4.2657 -4.3105 1.0084 34 1 2.6112 -3.6667 0.8785 35 1 4.1676 -1.8295 2.3547 36 1 3.0395 -1.7769 4.8011 37 1 4.6934 -2.4220 4.9309 38 1 1.2930 -4.3233 5.0583 39 1 1.8600 -2.5021 8.6240 40 1 3.9629 -5.1025 -0.6700 41 1 3.4999 -6.1507 -2.8495 42 1 3.1238 -4.7457 -4.8364 43 1 3.2038 -2.2923 -4.6424 44 1 3.6588 -1.2439 -2.4613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267361539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:23 Heat of formation + Delta-G solvation = -63.081081 kcal Electronic energy + Delta-G solvation = -30058.454176 eV Core-core repulsion = 25782.924468 eV Total energy + Delta-G solvation = -4275.529708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.43471 -40.81744 -40.05203 -39.73731 -37.62811 -37.24380 -35.16681 -34.95774 -33.73324 -32.14319 -31.80046 -31.36653 -28.92590 -26.83184 -25.70253 -23.88228 -23.67214 -23.07114 -22.47834 -21.40883 -21.03987 -19.96935 -19.44950 -18.42184 -17.91598 -17.77368 -17.45185 -16.99230 -16.80762 -16.62476 -16.38400 -16.27868 -16.05813 -15.69849 -15.42368 -15.27329 -15.04774 -14.73459 -14.45026 -14.17919 -14.15195 -13.81613 -13.73415 -13.47416 -13.18975 -12.89766 -12.83041 -12.37808 -12.24222 -12.08393 -11.88296 -11.75320 -11.52844 -11.52538 -11.47500 -11.02892 -10.84634 -10.55582 -9.88588 -9.63933 -9.54011 -9.23306 -7.92755 -5.29637 0.46559 0.62343 0.69347 1.38995 1.39911 1.45742 1.53121 1.70027 1.90869 2.05202 2.39620 2.54176 2.95089 3.03693 3.38518 3.45955 3.61903 3.87230 3.94238 4.05547 4.19130 4.28466 4.33451 4.37530 4.43098 4.48726 4.51064 4.66826 4.72162 4.86395 4.92776 5.04157 5.16952 5.27090 5.32396 5.55663 5.72282 5.74574 5.77091 5.83231 5.86980 5.96472 6.28315 6.30092 6.32101 6.67617 7.06461 7.15304 7.32921 7.84647 8.06401 9.28677 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.003172 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.127496 B = 8826.015500 C =10171.296082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.063 4.063 3 Si 0.946 3.054 4 H -0.289 1.289 5 H -0.312 1.312 6 H -0.233 1.233 7 C -0.194 4.194 8 H 0.048 0.952 9 N -0.736 5.736 10 C 0.204 3.796 11 H 0.113 0.887 12 C 0.127 3.873 13 N -0.698 5.698 14 C 0.514 3.486 15 O -0.580 6.580 16 C -0.137 4.137 17 C 0.113 3.887 18 H 0.155 0.845 19 N -0.708 5.708 20 C 0.702 3.298 21 O -0.588 6.588 22 N -0.666 5.666 23 C 0.545 3.455 24 O -0.481 6.481 25 C -0.095 4.095 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.134 4.134 29 C -0.141 4.141 30 C -0.103 4.103 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.411 0.589 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.445 0.555 39 H 0.442 0.558 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.125 0.875 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -7.143 6.124 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.240 1.240 6 H -0.157 1.157 7 C -0.325 4.325 8 H 0.066 0.934 9 N -0.378 5.378 10 C 0.095 3.905 11 H 0.130 0.870 12 C 0.001 3.999 13 N -0.348 5.348 14 C 0.301 3.699 15 O -0.461 6.461 16 C -0.177 4.177 17 C 0.004 3.996 18 H 0.172 0.828 19 N -0.372 5.372 20 C 0.401 3.599 21 O -0.465 6.465 22 N -0.338 5.338 23 C 0.331 3.669 24 O -0.351 6.351 25 C -0.098 4.098 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.152 4.152 29 C -0.159 4.159 30 C -0.121 4.121 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.247 0.753 36 H 0.127 0.873 37 H 0.171 0.829 38 H 0.291 0.709 39 H 0.287 0.713 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.143 0.857 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.779 -7.834 6.404 17.911 hybrid contribution -0.818 1.727 -0.234 1.925 sum 13.961 -6.106 6.171 16.440 Atomic orbital electron populations 1.69905 1.07516 1.26101 1.60354 1.25410 0.95707 1.00896 1.03331 0.85561 0.79225 0.80113 0.77603 1.21627 1.24003 1.15674 1.18587 0.82123 0.92367 1.39404 0.93433 1.42668 1.02534 1.03808 1.88813 1.19549 0.96463 0.85278 0.89246 0.86975 1.21601 1.00104 0.95394 0.82823 1.45657 1.64631 1.19111 1.05390 1.20626 0.76874 0.86128 0.86289 1.90668 1.47231 1.20167 1.88037 1.21871 1.07555 0.98958 0.89329 1.21891 0.83744 1.01700 0.92256 0.82794 1.45767 1.08450 1.63003 1.19951 1.16012 0.84379 0.78030 0.81487 1.91038 1.14349 1.62912 1.78167 1.44137 1.09126 1.57291 1.23226 1.20606 0.82472 0.76860 0.86969 1.90857 1.31308 1.46522 1.66433 1.20624 0.99121 0.93841 0.96212 1.21316 1.00988 0.94139 0.98497 1.21387 1.00108 1.00727 0.92700 1.21361 1.00702 0.93522 0.99610 1.21359 1.00930 0.95859 0.97711 1.20991 0.98549 0.99844 0.92725 0.93971 0.79314 0.90106 0.94992 0.75332 0.87344 0.82944 0.70932 0.71346 0.84909 0.84119 0.84338 0.85661 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -60.91 13.97 21.65 0.30 -60.61 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 3 Si 0.95 41.07 27.78 68.60 1.91 42.98 16 4 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.23 -8.25 6.46 99.48 0.64 -7.61 16 7 C -0.19 -9.52 9.10 84.03 0.77 -8.75 16 8 H 0.05 2.76 7.15 -2.91 -0.02 2.74 16 9 N -0.74 -26.91 3.62 -326.49 -1.18 -28.09 16 10 C 0.20 5.96 3.26 44.25 0.14 6.11 16 11 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 12 C 0.13 3.70 3.88 86.38 0.34 4.04 16 13 N -0.70 -17.62 5.39 -463.05 -2.49 -20.12 16 14 C 0.51 12.50 7.71 87.66 0.68 13.17 16 15 O -0.58 -17.37 14.85 -3.06 -0.05 -17.42 16 16 C -0.14 -2.24 5.49 29.85 0.16 -2.07 16 17 C 0.11 1.88 3.18 44.37 0.14 2.03 16 18 H 0.15 2.11 8.07 -2.39 -0.02 2.09 16 19 N -0.71 -15.58 5.85 -459.59 -2.69 -18.27 16 20 C 0.70 17.05 8.99 179.44 1.61 18.67 16 21 O -0.59 -19.42 18.04 -3.84 -0.07 -19.49 16 22 N -0.67 -11.63 5.70 -441.11 -2.52 -14.14 16 23 C 0.54 9.28 8.15 87.94 0.72 10.00 16 24 O -0.48 -9.91 18.02 -2.85 -0.05 -9.96 16 25 C -0.10 -3.03 5.19 -19.86 -0.10 -3.13 16 26 C -0.13 -3.71 9.14 22.27 0.20 -3.50 16 27 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 28 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 29 C -0.14 -4.27 10.05 22.27 0.22 -4.05 16 30 C -0.10 -3.51 9.00 22.27 0.20 -3.31 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.37 12.73 5.87 -92.71 -0.54 12.18 16 33 H 0.08 2.05 6.85 -2.39 -0.02 2.03 16 34 H 0.03 1.23 7.15 -2.38 -0.02 1.21 16 35 H 0.41 9.08 8.14 -92.70 -0.75 8.33 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.44 11.09 8.00 -92.72 -0.74 10.35 16 39 H 0.44 5.86 8.96 -92.71 -0.83 5.03 16 40 H 0.13 3.27 6.22 -2.91 -0.02 3.25 16 41 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.11 3.94 7.50 -2.91 -0.02 3.92 16 Total: -1.00 -75.89 373.48 -2.67 -78.56 By element: Atomic # 1 Polarization: 48.63 SS G_CDS: -1.83 Total: 46.80 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 5.99 Total: 19.76 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -8.58 Total: -141.23 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.17 Total: -46.87 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.91 Total: 42.98 kcal Total: -75.89 -2.67 -78.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267361539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.482 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds