Wall clock time and date at job start Wed Apr 1 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48507 * 109.46820 * 270.00212 * 3 2 1 5 5 H 1.48500 * 109.46836 * 29.99713 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00261 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47141 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.35979 * 116.99774 * 179.97438 * 11 10 9 13 13 C 1.38792 * 120.49698 * 0.26147 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.28131 * 13 12 11 15 15 C 1.38078 * 119.35891 * 359.45638 * 14 13 12 16 16 N 1.31962 * 120.95340 * 0.28101 * 15 14 13 17 17 C 1.32288 * 121.69229 * 359.97438 * 16 15 14 18 18 N 1.39502 * 119.72932 * 179.97438 * 17 16 15 19 19 C 1.34775 * 120.00381 * 0.02562 * 18 17 16 20 20 O 1.21610 * 119.99742 * 0.02562 * 19 18 17 21 21 C 1.47396 * 120.00356 * 179.97438 * 19 18 17 22 22 C 1.41297 * 126.41572 * 0.02562 * 21 19 18 23 23 N 1.30450 * 108.02684 * 180.02562 * 22 21 19 24 24 N 1.39933 * 108.89897 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75283 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.46953 * 305.02520 * 25 24 23 27 27 O 1.42905 * 109.46891 * 179.97438 * 26 25 24 28 28 C 1.34265 * 108.49280 * 359.72807 * 24 23 22 29 29 H 0.96991 * 119.99840 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47335 * 59.99721 * 9 7 2 31 31 H 1.09006 * 109.47227 * 299.99575 * 9 7 2 32 32 H 1.09000 * 109.47454 * 59.99524 * 10 9 7 33 33 H 1.09006 * 109.46493 * 299.99755 * 10 9 7 34 34 H 1.08001 * 120.77775 * 0.03966 * 13 12 11 35 35 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 36 36 H 1.07999 * 119.52874 * 180.25472 * 15 14 13 37 37 H 0.97003 * 120.00046 * 179.97438 * 18 17 16 38 38 H 1.08004 * 125.98816 * 359.97438 * 22 21 19 39 39 H 1.09000 * 109.46562 * 65.02438 * 25 24 23 40 40 H 1.08995 * 109.47155 * 185.02253 * 25 24 23 41 41 H 1.08998 * 109.47573 * 299.99923 * 26 25 24 42 42 H 1.08996 * 109.46964 * 60.00180 * 26 25 24 43 43 H 0.96704 * 113.99604 * 180.02562 * 27 26 25 44 44 H 1.08001 * 126.29185 * 180.26763 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0045 12 6 2.2713 -6.0401 0.0050 13 6 3.6579 -5.9795 0.0094 14 6 4.3717 -7.1697 0.0038 15 6 3.6878 -8.3692 0.0055 16 7 2.3685 -8.3984 0.0069 17 6 1.6488 -7.2883 0.0071 18 7 0.2560 -7.3669 0.0080 19 6 -0.3511 -8.5701 0.0091 20 8 0.3152 -9.5874 0.0098 21 6 -1.8228 -8.6531 0.0106 22 6 -2.7242 -7.5650 0.0106 23 7 -3.9370 -8.0456 0.0127 24 7 -3.8707 -9.4434 0.0137 25 6 -5.0177 -10.3547 0.0166 26 6 -5.9297 -10.0229 1.1994 27 8 -7.0489 -10.9115 1.2018 28 6 -2.5786 -9.8084 0.0060 29 1 -0.4849 0.8400 0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8920 32 1 2.8720 -3.6036 0.8926 33 1 2.8719 -3.6051 -0.8874 34 1 4.1695 -5.0283 0.0131 35 1 5.4516 -7.1579 0.0027 36 1 4.2405 -9.2971 0.0054 37 1 -0.2755 -6.5555 0.0086 38 1 -2.4562 -6.5188 0.0098 39 1 -5.5738 -10.2417 -0.9140 40 1 -4.6652 -11.3822 0.1067 41 1 -5.3736 -10.1358 2.1300 42 1 -6.2823 -8.9955 1.1092 43 1 -7.6710 -10.7584 1.9261 44 1 -2.2001 -10.8199 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292621604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:29 Heat of formation + Delta-G solvation = 1.822738 kcal Electronic energy + Delta-G solvation = -28652.447163 eV Core-core repulsion = 24379.731895 eV Total energy + Delta-G solvation = -4272.715267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68894 -40.70183 -38.87933 -37.72426 -37.55059 -34.76672 -33.99834 -33.45894 -31.63998 -30.82420 -30.47920 -29.48494 -28.56540 -25.42156 -24.50152 -23.71828 -22.93130 -22.31633 -21.03201 -20.85649 -19.97131 -18.67402 -18.24159 -17.62154 -17.15221 -16.47942 -16.23277 -16.12519 -15.77659 -15.60448 -15.23816 -14.88829 -14.80306 -14.58743 -14.56314 -14.12942 -13.97069 -13.80202 -13.34449 -13.09313 -12.82616 -12.69713 -12.39602 -12.11045 -11.99830 -11.90314 -11.31412 -11.05276 -10.98462 -10.67660 -10.67183 -10.60759 -10.17705 -10.03027 -9.90394 -9.76244 -9.40021 -9.19350 -9.00808 -8.95778 -8.51197 -7.61239 -6.16966 -4.21751 1.09831 1.43322 1.48559 1.85986 2.03635 3.00790 3.23331 3.29535 3.31732 3.41474 3.55568 3.58529 4.08718 4.13198 4.34768 4.41309 4.43403 4.53450 4.66665 4.72636 4.90330 4.98299 4.99648 5.11268 5.14231 5.19981 5.25166 5.29454 5.49343 5.56497 5.88548 5.92045 6.09376 6.13148 6.22900 6.40165 6.46380 6.56161 6.67567 6.96080 7.22769 7.35520 7.36858 7.54258 7.66063 7.87284 8.13689 8.15869 8.42379 8.83479 9.43128 10.94456 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.002403 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.112110 B =11647.416268 C =14693.338396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.067 3.933 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.075 3.925 16 N -0.443 5.443 17 C 0.332 3.668 18 N -0.647 5.647 19 C 0.588 3.412 20 O -0.491 6.491 21 C -0.289 4.289 22 C 0.088 3.912 23 N -0.294 5.294 24 N -0.363 5.363 25 C 0.133 3.867 26 C 0.066 3.934 27 O -0.572 6.572 28 C 0.134 3.866 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.423 0.577 38 H 0.196 0.804 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.390 0.610 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -20.931 1.729 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.015 3.985 13 C -0.174 4.174 14 C -0.183 4.183 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.100 3.900 18 N -0.294 5.294 19 C 0.375 3.625 20 O -0.363 6.363 21 C -0.304 4.304 22 C -0.100 4.100 23 N -0.113 5.113 24 N -0.143 5.143 25 C 0.011 3.989 26 C -0.013 4.013 27 O -0.378 6.378 28 C -0.017 4.017 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.261 0.739 38 H 0.213 0.787 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.239 0.761 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.359 -22.384 1.215 23.594 hybrid contribution 1.501 2.424 0.489 2.893 sum -5.859 -19.959 1.703 20.871 Atomic orbital electron populations 1.69957 1.06086 1.27070 1.49531 1.24978 0.94912 0.99392 0.94826 0.86492 0.79754 0.82923 0.78259 1.20473 1.21029 1.19755 1.20948 0.93060 0.90144 1.52469 0.92350 1.19128 0.94138 0.88895 0.98906 1.23394 0.97247 0.80320 0.99829 1.86097 1.36232 1.12890 1.87607 1.19589 0.91139 0.87092 1.00663 1.21601 0.92236 1.00340 1.03270 1.21883 1.01156 0.92555 1.02657 1.22407 0.88833 0.97855 0.99076 1.67639 1.07809 1.26889 1.13519 1.17751 0.84689 0.86938 1.00671 1.43182 1.03685 1.10206 1.72306 1.17286 0.85750 0.83097 0.76357 1.90858 1.65336 1.33888 1.46226 1.20197 0.93760 0.93023 1.23464 1.24271 0.89202 1.00262 0.96284 1.77218 1.22162 0.87129 1.24762 1.48349 1.05161 1.05431 1.55398 1.21495 0.85164 0.91607 1.00587 1.22268 0.87782 0.94055 0.97207 1.86343 1.36737 1.59148 1.55564 1.22955 0.83151 1.00318 0.95271 0.92645 0.95311 0.95327 0.92958 0.92946 0.83768 0.84852 0.82660 0.73935 0.78718 0.88375 0.87401 0.92827 0.91628 0.76133 0.79263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.29 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.75 9.39 -19.67 -0.18 -5.93 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 13 C -0.15 -2.14 9.14 -39.17 -0.36 -2.50 16 14 C -0.16 -2.00 10.10 -39.44 -0.40 -2.40 16 15 C 0.07 1.01 11.17 -17.55 -0.20 0.82 16 16 N -0.44 -7.42 7.87 -12.24 -0.10 -7.52 16 17 C 0.33 5.54 7.44 -154.49 -1.15 4.39 16 18 N -0.65 -9.65 5.38 -12.28 -0.07 -9.72 16 19 C 0.59 8.74 7.78 -12.53 -0.10 8.64 16 20 O -0.49 -8.65 15.15 5.27 0.08 -8.57 16 21 C -0.29 -3.49 6.13 -105.07 -0.64 -4.14 16 22 C 0.09 0.99 11.50 -16.98 -0.20 0.80 16 23 N -0.29 -3.40 12.33 30.86 0.38 -3.02 16 24 N -0.36 -3.43 3.65 -60.80 -0.22 -3.65 16 25 C 0.13 0.87 6.86 -4.04 -0.03 0.84 16 26 C 0.07 0.42 7.22 37.16 0.27 0.69 16 27 O -0.57 -3.43 13.66 -35.23 -0.48 -3.92 16 28 C 0.13 1.32 11.25 -16.55 -0.19 1.14 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 33 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 34 H 0.14 1.94 6.44 -52.49 -0.34 1.60 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.42 5.60 7.00 -40.82 -0.29 5.31 16 38 H 0.20 1.81 7.50 -52.48 -0.39 1.42 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.39 0.72 9.12 45.56 0.42 1.14 16 44 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -35.31 385.94 -7.43 -42.74 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.74 Total: 4.58 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.63 Total: -1.69 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.73 Total: -48.65 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.59 Total: -18.42 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.31 -7.43 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292621604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.563 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds