Wall clock time and date at job start Wed Apr 1 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48507 * 109.46820 * 270.00212 * 3 2 1 5 5 H 1.48500 * 109.46836 * 29.99713 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00261 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47141 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.35979 * 116.99774 * 179.97438 * 11 10 9 13 13 C 1.38792 * 120.49698 * 0.26147 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.28131 * 13 12 11 15 15 C 1.38078 * 119.35891 * 359.45638 * 14 13 12 16 16 N 1.31962 * 120.95340 * 0.28101 * 15 14 13 17 17 C 1.32288 * 121.69229 * 359.97438 * 16 15 14 18 18 N 1.39502 * 119.72932 * 179.97438 * 17 16 15 19 19 C 1.34775 * 120.00381 * 0.02562 * 18 17 16 20 20 O 1.21610 * 119.99742 * 0.02562 * 19 18 17 21 21 C 1.47396 * 120.00356 * 179.97438 * 19 18 17 22 22 C 1.41297 * 126.41572 * 0.02562 * 21 19 18 23 23 N 1.30450 * 108.02684 * 180.02562 * 22 21 19 24 24 N 1.39933 * 108.89897 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75283 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.46953 * 305.02520 * 25 24 23 27 27 O 1.42905 * 109.46891 * 179.97438 * 26 25 24 28 28 C 1.34265 * 108.49280 * 359.72807 * 24 23 22 29 29 H 0.96991 * 119.99840 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47335 * 59.99721 * 9 7 2 31 31 H 1.09006 * 109.47227 * 299.99575 * 9 7 2 32 32 H 1.09000 * 109.47454 * 59.99524 * 10 9 7 33 33 H 1.09006 * 109.46493 * 299.99755 * 10 9 7 34 34 H 1.08001 * 120.77775 * 0.03966 * 13 12 11 35 35 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 36 36 H 1.07999 * 119.52874 * 180.25472 * 15 14 13 37 37 H 0.97003 * 120.00046 * 179.97438 * 18 17 16 38 38 H 1.08004 * 125.98816 * 359.97438 * 22 21 19 39 39 H 1.09000 * 109.46562 * 65.02438 * 25 24 23 40 40 H 1.08995 * 109.47155 * 185.02253 * 25 24 23 41 41 H 1.08998 * 109.47573 * 299.99923 * 26 25 24 42 42 H 1.08996 * 109.46964 * 60.00180 * 26 25 24 43 43 H 0.96704 * 113.99604 * 180.02562 * 27 26 25 44 44 H 1.08001 * 126.29185 * 180.26763 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0045 12 6 2.2713 -6.0401 0.0050 13 6 3.6579 -5.9795 0.0094 14 6 4.3717 -7.1697 0.0038 15 6 3.6878 -8.3692 0.0055 16 7 2.3685 -8.3984 0.0069 17 6 1.6488 -7.2883 0.0071 18 7 0.2560 -7.3669 0.0080 19 6 -0.3511 -8.5701 0.0091 20 8 0.3152 -9.5874 0.0098 21 6 -1.8228 -8.6531 0.0106 22 6 -2.7242 -7.5650 0.0106 23 7 -3.9370 -8.0456 0.0127 24 7 -3.8707 -9.4434 0.0137 25 6 -5.0177 -10.3547 0.0166 26 6 -5.9297 -10.0229 1.1994 27 8 -7.0489 -10.9115 1.2018 28 6 -2.5786 -9.8084 0.0060 29 1 -0.4849 0.8400 0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8920 32 1 2.8720 -3.6036 0.8926 33 1 2.8719 -3.6051 -0.8874 34 1 4.1695 -5.0283 0.0131 35 1 5.4516 -7.1579 0.0027 36 1 4.2405 -9.2971 0.0054 37 1 -0.2755 -6.5555 0.0086 38 1 -2.4562 -6.5188 0.0098 39 1 -5.5738 -10.2417 -0.9140 40 1 -4.6652 -11.3822 0.1067 41 1 -5.3736 -10.1358 2.1300 42 1 -6.2823 -8.9955 1.1092 43 1 -7.6710 -10.7584 1.9261 44 1 -2.2001 -10.8199 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292621604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:28 Heat of formation + Delta-G solvation = -23.994617 kcal Electronic energy + Delta-G solvation = -28653.566687 eV Core-core repulsion = 24379.731895 eV Total energy + Delta-G solvation = -4273.834792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55967 -41.84405 -40.06523 -38.99519 -38.06069 -35.93811 -35.42276 -34.69342 -32.87783 -32.29840 -31.53134 -30.57603 -29.47022 -27.14186 -25.56785 -24.55143 -24.15730 -23.43693 -22.48883 -21.74277 -21.01776 -19.71430 -19.19943 -18.76669 -18.16679 -17.96555 -17.36858 -17.15255 -16.94629 -16.60638 -16.41504 -16.16745 -15.94784 -15.77656 -15.40102 -15.16249 -14.97657 -14.79886 -14.45009 -14.33376 -14.11820 -13.88744 -13.59149 -13.30343 -13.25824 -12.78145 -12.73166 -12.66974 -12.42379 -12.15999 -11.83215 -11.67769 -11.60709 -11.40739 -11.26916 -11.08147 -10.70138 -10.59005 -10.37352 -10.16415 -9.85284 -8.80023 -8.23971 -6.36179 0.04831 0.33195 0.54157 1.09163 1.15635 1.43457 1.44373 1.55265 1.94640 2.14674 2.36662 2.46073 2.95530 3.04480 3.11366 3.41145 3.63858 3.74488 3.81226 3.89729 3.93363 4.00208 4.09697 4.17440 4.21288 4.29437 4.32788 4.36951 4.50604 4.61674 4.65831 4.71164 4.78104 5.00875 5.17254 5.26367 5.33650 5.34830 5.53644 5.57274 5.74657 5.76295 6.10222 6.22942 6.36898 6.42765 6.70565 6.78869 7.00068 7.30780 7.33683 8.88605 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.002403 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.112110 B =11647.416268 C =14693.338396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.029 3.971 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.074 3.926 16 N -0.472 5.472 17 C 0.314 3.686 18 N -0.648 5.648 19 C 0.589 3.411 20 O -0.524 6.524 21 C -0.313 4.313 22 C 0.086 3.914 23 N -0.316 5.316 24 N -0.355 5.355 25 C 0.125 3.875 26 C 0.072 3.928 27 O -0.582 6.582 28 C 0.149 3.851 29 H 0.266 0.734 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.426 0.574 38 H 0.204 0.796 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.407 0.593 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -21.858 1.816 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.010 4.010 13 C -0.175 4.175 14 C -0.167 4.167 15 C -0.083 4.083 16 N -0.187 5.187 17 C 0.082 3.918 18 N -0.295 5.295 19 C 0.378 3.622 20 O -0.399 6.399 21 C -0.328 4.328 22 C -0.102 4.102 23 N -0.135 5.135 24 N -0.135 5.135 25 C 0.005 3.995 26 C -0.006 4.006 27 O -0.391 6.391 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.204 0.796 37 H 0.264 0.736 38 H 0.221 0.779 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.259 0.741 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.634 -23.311 1.312 24.018 hybrid contribution 0.933 2.549 0.469 2.754 sum -4.701 -20.763 1.781 21.363 Atomic orbital electron populations 1.70097 1.07880 1.28074 1.50771 1.25956 0.95759 1.03418 0.94400 0.85377 0.78689 0.78046 0.78524 1.19775 1.20971 1.18337 1.21407 0.93872 0.91064 1.51779 0.91093 1.18949 0.94539 0.90967 0.96327 1.22951 0.95602 0.79641 1.00874 1.86026 1.36614 1.13002 1.88544 1.19743 0.92167 0.86187 1.02939 1.21899 0.91406 1.01856 1.02345 1.22275 1.03047 0.91080 1.00265 1.23074 0.88088 0.99778 0.97322 1.67694 1.09440 1.27080 1.14535 1.17953 0.85324 0.87114 1.01403 1.43260 1.03552 1.10552 1.72132 1.17613 0.86658 0.82526 0.75364 1.90817 1.66262 1.34666 1.48142 1.20094 0.92453 0.94288 1.25964 1.24439 0.89085 1.00758 0.95949 1.77181 1.22248 0.88566 1.25523 1.48562 1.05842 1.04989 1.54078 1.21802 0.84550 0.92235 1.00878 1.22117 0.87937 0.93439 0.97143 1.86303 1.36992 1.58994 1.56781 1.23343 0.82984 1.00827 0.93149 0.92568 0.97967 0.97947 0.91805 0.91806 0.82592 0.80732 0.79573 0.73565 0.77947 0.88036 0.84699 0.92653 0.92932 0.74149 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.78 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.48 5.34 29.85 0.16 1.64 16 10 C 0.08 3.27 4.70 71.98 0.34 3.61 16 11 O -0.33 -12.24 9.39 -93.31 -0.88 -13.11 16 12 C 0.04 1.33 6.72 22.70 0.15 1.49 16 13 C -0.15 -4.03 9.14 22.53 0.21 -3.82 16 14 C -0.15 -3.16 10.10 22.36 0.23 -2.94 16 15 C 0.07 1.84 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.56 7.87 -192.63 -1.52 -17.07 16 17 C 0.31 10.58 7.44 133.01 0.99 11.57 16 18 N -0.65 -20.16 5.38 -311.01 -1.67 -21.83 16 19 C 0.59 18.03 7.78 86.66 0.67 18.70 16 20 O -0.52 -18.74 15.15 -4.06 -0.06 -18.80 16 21 C -0.31 -7.68 6.13 -20.16 -0.12 -7.80 16 22 C 0.09 2.00 11.50 85.65 0.99 2.99 16 23 N -0.32 -7.37 12.33 -56.27 -0.69 -8.07 16 24 N -0.36 -6.41 3.65 -346.28 -1.26 -7.67 16 25 C 0.13 1.46 6.86 86.38 0.59 2.05 16 26 C 0.07 0.85 7.22 71.98 0.52 1.37 16 27 O -0.58 -6.18 13.66 -148.98 -2.04 -8.22 16 28 C 0.15 2.82 11.25 84.28 0.95 3.77 16 29 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 31 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 33 H 0.06 2.33 7.71 -2.38 -0.02 2.31 16 34 H 0.16 3.80 6.44 -2.91 -0.02 3.78 16 35 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.43 12.10 7.00 -92.71 -0.65 11.45 16 38 H 0.20 4.10 7.50 -2.91 -0.02 4.08 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.14 0.86 8.06 -2.39 -0.02 0.84 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.41 0.99 9.12 -74.05 -0.68 0.32 16 44 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -77.55 385.94 1.24 -76.31 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.26 Total: 21.29 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 7.31 Total: 7.28 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -4.86 Total: -108.88 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -2.97 Total: -40.13 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -77.55 1.24 -76.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292621604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.315 kcal (2) G-P(sol) polarization free energy of solvation -77.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds