Wall clock time and date at job start Wed Apr 1 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47252 * 89.99839 * 3 2 1 5 5 H 1.48505 * 109.47148 * 329.99474 * 3 2 1 6 6 H 1.48498 * 109.47112 * 209.99876 * 3 2 1 7 7 C 1.37875 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00390 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99522 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46683 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46773 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00040 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99672 * 180.02562 * 11 10 9 14 14 C 1.47075 * 120.88389 * 359.72078 * 13 11 10 15 15 C 1.53696 * 108.27581 * 128.75428 * 14 13 11 16 16 N 1.46895 * 109.25274 * 54.08686 * 15 14 13 17 17 C 1.46908 * 111.00026 * 172.60506 * 16 15 14 18 18 H 1.08997 * 109.64051 * 314.60917 * 17 16 15 19 19 C 1.54158 * 109.64969 * 194.17806 * 17 16 15 20 20 S 1.82916 * 105.08577 * 212.24003 * 19 17 16 21 21 O 1.42103 * 109.35628 * 115.52218 * 20 19 17 22 22 O 1.42104 * 109.35364 * 248.72188 * 20 19 17 23 23 C 1.83285 * 97.01847 * 2.12391 * 20 19 17 24 24 C 1.53879 * 109.64572 * 75.03385 * 17 16 15 25 25 H 1.09003 * 110.02868 * 47.74398 * 24 17 16 26 26 O 1.42901 * 110.02846 * 286.32928 * 24 17 16 27 27 C 1.46900 * 111.27044 * 296.75274 * 16 15 14 28 28 C 1.47080 * 120.87915 * 180.02562 * 13 11 10 29 29 H 0.97000 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46959 * 299.99476 * 9 7 2 31 31 H 1.08999 * 109.47357 * 60.00028 * 9 7 2 32 32 H 1.08996 * 109.47150 * 299.99104 * 10 9 7 33 33 H 1.08999 * 109.47111 * 59.99988 * 10 9 7 34 34 H 1.09000 * 109.63101 * 248.52836 * 14 13 11 35 35 H 1.09009 * 109.62746 * 9.10546 * 14 13 11 36 36 H 1.08993 * 109.64834 * 294.07882 * 15 14 13 37 37 H 1.09005 * 109.43985 * 173.95938 * 15 14 13 38 38 H 1.09004 * 110.31749 * 331.14240 * 19 17 16 39 39 H 1.08997 * 110.32045 * 93.33778 * 19 17 16 40 40 H 1.09001 * 110.79214 * 141.48751 * 23 20 19 41 41 H 1.09005 * 110.78795 * 264.75276 * 23 20 19 42 42 H 0.96694 * 114.00332 * 179.97438 * 26 24 17 43 43 H 1.09001 * 109.48922 * 303.14706 * 27 16 15 44 44 H 1.08996 * 109.51612 * 183.08249 * 27 16 15 45 45 H 1.09008 * 109.62915 * 350.89432 * 28 13 11 46 46 H 1.08997 * 109.63346 * 111.47122 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 1.4466 2.6527 -0.7002 6 1 3.5467 1.4401 -0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5285 -2.6366 0.0022 12 8 6.1348 -1.5863 0.0009 13 7 6.2023 -3.8039 0.0026 14 6 5.4866 -5.0887 0.0093 15 6 6.0453 -5.9575 -1.1288 16 7 7.5041 -6.0591 -0.9892 17 6 8.0593 -7.0210 -1.9508 18 1 7.4514 -7.9256 -1.9566 19 6 9.5074 -7.3721 -1.5555 20 16 10.3701 -7.6856 -3.1376 21 8 11.3828 -6.7062 -3.3240 22 8 10.6919 -9.0664 -3.2331 23 6 8.9552 -7.3139 -4.2418 24 6 8.0722 -6.3974 -3.3575 25 1 8.4962 -5.3940 -3.3173 26 8 6.7441 -6.3472 -3.8828 27 6 8.1456 -4.7450 -1.1291 28 6 7.6729 -3.8265 0.0032 29 1 -0.4850 0.8401 -0.0004 30 1 3.8751 -0.6804 -0.8889 31 1 3.8745 -0.6800 0.8911 32 1 3.6579 -3.1498 0.8925 33 1 3.6584 -3.1510 -0.8875 34 1 5.6408 -5.5888 0.9655 35 1 4.4221 -4.9157 -0.1491 36 1 5.8025 -5.5036 -2.0895 37 1 5.6046 -6.9531 -1.0751 38 1 9.9700 -6.5358 -1.0313 39 1 9.5234 -8.2661 -0.9321 40 1 9.2893 -6.7844 -5.1341 41 1 8.4248 -8.2271 -4.5117 42 1 6.6856 -5.9633 -4.7683 43 1 7.8736 -4.3080 -2.0899 44 1 9.2281 -4.8607 -1.0756 45 1 8.0547 -2.8185 -0.1593 46 1 8.0330 -4.2077 0.9587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324256708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:18 Heat of formation + Delta-G solvation = -130.042072 kcal Electronic energy + Delta-G solvation = -29389.605815 eV Core-core repulsion = 25214.323661 eV Total energy + Delta-G solvation = -4175.282154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.61482 -39.22139 -37.62855 -37.15065 -36.59821 -35.21642 -33.59065 -32.83777 -31.79822 -30.91348 -30.01033 -27.46074 -26.06948 -24.63370 -23.98316 -22.39040 -21.30511 -20.16634 -19.49469 -18.60075 -18.35667 -17.70366 -17.10213 -16.93370 -16.39982 -16.24994 -15.81424 -15.69604 -15.53012 -15.39322 -14.87685 -14.55276 -14.13556 -14.08849 -13.72072 -13.69556 -13.37917 -13.04643 -12.90166 -12.72587 -12.60482 -12.57741 -12.45050 -12.27021 -11.99472 -11.78693 -11.73970 -11.47012 -11.40310 -11.23139 -10.99293 -10.94046 -10.61730 -10.14670 -10.06634 -9.80774 -9.26842 -9.17514 -8.97574 -8.53465 -8.45226 -6.05124 -4.03917 -0.62994 1.84824 2.89381 3.00647 3.06119 3.17498 3.29108 3.36117 3.42774 3.52608 3.53338 3.70630 3.91477 4.10952 4.21208 4.26305 4.48920 4.54790 4.68718 4.73615 4.83364 4.95921 4.98789 5.05485 5.12357 5.25044 5.27718 5.30406 5.33988 5.54801 5.63424 5.74414 5.90111 6.00745 6.05282 6.41924 6.49374 6.58036 6.68432 6.87482 7.33667 7.40478 7.58385 7.77011 8.46211 8.57510 8.97660 9.57990 11.07658 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002260 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.268248 B =12387.300249 C =12577.042582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.540 6.540 13 N -0.625 5.625 14 C 0.112 3.888 15 C 0.037 3.963 16 N -0.516 5.516 17 C 0.098 3.902 18 H 0.115 0.885 19 C -0.584 4.584 20 S 2.395 3.605 21 O -0.930 6.930 22 O -0.931 6.931 23 C -0.631 4.631 24 C 0.074 3.926 25 H 0.087 0.913 26 O -0.539 6.539 27 C 0.025 3.975 28 C 0.117 3.883 29 H 0.263 0.737 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.387 0.613 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.929 -19.917 -6.956 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.416 6.416 13 N -0.361 5.361 14 C -0.012 4.012 15 C -0.091 4.091 16 N -0.239 5.239 17 C -0.013 4.013 18 H 0.133 0.867 19 C -0.713 4.713 20 S 2.577 3.423 21 O -0.927 6.927 22 O -0.928 6.928 23 C -0.761 4.761 24 C 0.011 3.989 25 H 0.105 0.895 26 O -0.345 6.345 27 C -0.103 4.103 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.236 0.764 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.964 -19.924 -6.093 29.557 hybrid contribution -0.445 1.492 -1.228 1.983 sum 20.519 -18.432 -7.321 28.537 Atomic orbital electron populations 1.69909 1.06285 1.26979 1.51027 1.24970 0.94708 0.99228 0.94330 0.86798 0.80586 0.83405 0.78767 1.20225 1.21452 1.18579 1.21101 0.89235 0.94549 1.51377 0.90933 1.19376 0.96435 0.90184 0.97608 1.21685 0.87999 1.03227 1.03101 1.21576 0.91624 0.82273 0.74108 1.90642 1.70701 1.31033 1.49272 1.48321 1.06080 1.06364 1.75378 1.21948 0.97346 0.83256 0.98618 1.22738 0.86157 1.01026 0.99143 1.62182 1.05594 1.08306 1.47859 1.22030 0.93787 0.98363 0.87095 0.86692 1.30672 1.06552 1.13251 1.20859 1.08863 0.77791 0.75663 0.80027 1.93660 1.53012 1.61645 1.84375 1.93645 1.82576 1.31465 1.85098 1.31391 1.19566 1.11131 1.13999 1.23301 0.84587 0.98302 0.92703 0.89532 1.86541 1.24865 1.85788 1.37324 1.22744 0.99464 0.89092 0.99011 1.21546 0.80975 1.00282 0.97793 0.92709 0.95915 0.96302 0.89608 0.89676 0.90835 0.88360 0.91645 0.89430 0.83384 0.83010 0.84182 0.83326 0.76418 0.93344 0.89534 0.88587 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.29 4.00 -27.88 -0.11 -2.40 16 11 C 0.51 9.22 7.71 -10.98 -0.08 9.14 16 12 O -0.54 -11.76 15.43 5.56 0.09 -11.67 16 13 N -0.63 -8.34 3.00 -172.16 -0.52 -8.86 16 14 C 0.11 1.15 6.53 -3.37 -0.02 1.13 16 15 C 0.04 0.32 5.10 -3.46 -0.02 0.30 16 16 N -0.52 -3.90 4.55 -224.76 -1.02 -4.92 16 17 C 0.10 0.53 2.38 -66.64 -0.16 0.37 16 18 H 0.12 0.54 7.89 -51.93 -0.41 0.13 16 19 C -0.58 -2.35 6.75 37.76 0.25 -2.09 16 20 S 2.40 12.94 6.10 -107.50 -0.66 12.29 16 21 O -0.93 -8.42 18.15 -57.71 -1.05 -9.47 16 22 O -0.93 -8.30 18.15 -57.71 -1.05 -9.34 16 23 C -0.63 -2.17 6.99 38.20 0.27 -1.91 16 24 C 0.07 0.37 2.89 -25.23 -0.07 0.30 16 25 H 0.09 0.44 5.83 -51.93 -0.30 0.13 16 26 O -0.54 -3.13 11.14 -35.23 -0.39 -3.53 16 27 C 0.03 0.21 4.52 -3.68 -0.02 0.19 16 28 C 0.12 1.31 6.60 -3.59 -0.02 1.29 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 31 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 32 H 0.09 1.51 7.99 -51.93 -0.41 1.10 16 33 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.02 6.02 -51.92 -0.31 0.70 16 36 H 0.07 0.64 6.30 -51.93 -0.33 0.31 16 37 H 0.09 0.63 7.94 -51.93 -0.41 0.21 16 38 H 0.15 0.54 6.25 -51.93 -0.32 0.22 16 39 H 0.15 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.15 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.39 1.05 9.11 45.56 0.42 1.46 16 43 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 44 H 0.09 0.54 6.29 -51.93 -0.33 0.21 16 45 H 0.10 1.23 7.06 -51.92 -0.37 0.86 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -40.19 367.11 -9.45 -49.64 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.98 Total: -3.49 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.51 Total: -6.95 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.77 Total: -40.76 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -2.40 Total: -34.02 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Atomic # 16 Polarization: 12.94 SS G_CDS: -0.66 Total: 12.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.19 -9.45 -49.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324256708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.404 kcal (2) G-P(sol) polarization free energy of solvation -40.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds