Wall clock time and date at job start Wed Apr 1 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35976 * 117.00051 * 2 1 4 4 C 1.38515 * 120.05151 * 359.97438 * 3 2 1 5 5 C 1.38677 * 119.96115 * 180.02562 * 4 3 2 6 6 O 1.35974 * 119.96530 * 180.02562 * 5 4 3 7 7 C 1.38716 * 120.06551 * 359.97217 * 5 4 3 8 8 C 1.38194 * 120.10743 * 359.77111 * 7 5 4 9 9 C 1.38674 * 120.03441 * 0.51009 * 8 7 5 10 10 N 1.40366 * 120.03368 * 179.74686 * 9 8 7 11 11 C 1.34771 * 119.99891 * 34.63544 * 10 9 8 12 12 O 1.21610 * 120.00198 * 355.54781 * 11 10 9 13 13 N 1.34778 * 119.99814 * 175.54989 * 11 10 9 14 14 C 1.40186 * 119.99790 * 180.02562 * 13 11 10 15 15 C 1.40402 * 125.97596 * 0.24728 * 14 13 11 16 16 C 1.35244 * 107.86600 * 180.15586 * 15 14 13 17 17 C 1.50703 * 126.06557 * 179.88048 * 16 15 14 18 18 N 1.34958 * 107.86242 * 359.61573 * 16 15 14 19 19 C 1.46495 * 125.97723 * 180.22320 * 18 16 15 20 20 C 1.50702 * 109.47058 * 90.00298 * 19 18 16 21 21 H 1.07996 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99915 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00179 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47334 * 59.99433 * 24 22 20 26 26 H 1.48501 * 109.47576 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47250 * 299.99494 * 24 22 20 28 28 N 1.31218 * 125.96925 * 179.97438 * 14 13 11 29 29 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47380 * 300.00065 * 1 2 3 31 31 H 1.08994 * 109.47110 * 60.00161 * 1 2 3 32 32 H 1.07999 * 120.02011 * 359.97438 * 4 3 2 33 33 H 0.96696 * 114.00342 * 89.99953 * 6 5 4 34 34 H 1.08003 * 119.94740 * 180.02562 * 7 5 4 35 35 H 1.08001 * 119.98179 * 180.25563 * 8 7 5 36 36 H 0.96998 * 119.99600 * 214.64287 * 10 9 8 37 37 H 0.97000 * 120.00315 * 359.97438 * 13 11 10 38 38 H 1.08005 * 126.06503 * 0.02562 * 15 14 13 39 39 H 1.08997 * 109.47219 * 269.68573 * 17 16 15 40 40 H 1.08999 * 109.46591 * 149.68701 * 17 16 15 41 41 H 1.08997 * 109.47474 * 29.68865 * 17 16 15 42 42 H 1.09001 * 109.47066 * 210.00034 * 19 18 16 43 43 H 1.08999 * 109.47111 * 329.99833 * 19 18 16 44 44 H 0.96998 * 120.00075 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2929 2.3739 -0.0005 5 6 1.9245 3.6085 -0.0011 6 8 1.1850 4.7496 -0.0011 7 6 3.3098 3.6805 -0.0005 8 6 4.0641 2.5226 0.0054 9 6 3.4371 1.2857 0.0001 10 7 4.2033 0.1097 0.0007 11 6 5.3730 0.0678 0.6688 12 8 5.8042 1.0715 1.2033 13 7 6.0648 -1.0864 0.7447 14 6 7.2812 -1.1300 1.4402 15 6 7.8902 -0.0537 2.1050 16 6 9.0467 -0.5006 2.6452 17 6 10.0260 0.3177 3.4467 18 7 9.1652 -1.8108 2.3441 19 6 10.2701 -2.6881 2.7387 20 6 9.9553 -3.3259 4.0672 21 1 9.0253 -3.1001 4.5678 22 6 10.8549 -4.1970 4.6442 23 7 11.9876 -4.4717 4.0349 24 14 10.4650 -4.9871 6.2913 25 1 9.2176 -5.7845 6.1749 26 1 11.5849 -5.8765 6.6913 27 1 10.2821 -3.9289 7.3170 28 7 8.0471 -2.1851 1.5878 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 0.2144 2.3188 -0.0014 33 1 0.9714 5.0800 0.8823 34 1 3.7996 4.6431 -0.0005 35 1 5.1425 2.5811 0.0100 36 1 3.8909 -0.6729 -0.4799 37 1 5.7207 -1.8870 0.3187 38 1 7.5046 0.9530 2.1714 39 1 10.7646 0.7587 2.7773 40 1 10.5288 -0.3238 4.1704 41 1 9.4931 1.1101 3.9722 42 1 10.4043 -3.4645 1.9855 43 1 11.1858 -2.1030 2.8244 44 1 12.6203 -5.0848 4.4406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669840708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:56 Heat of formation + Delta-G solvation = 9.098721 kcal Electronic energy + Delta-G solvation = -29157.658130 eV Core-core repulsion = 24885.258373 eV Total energy + Delta-G solvation = -4272.399757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23639 -40.56171 -39.57178 -38.61294 -36.69195 -34.84182 -34.42810 -33.33557 -31.44395 -30.82621 -30.53252 -29.15835 -27.43325 -26.58836 -26.30986 -23.74399 -22.82808 -22.58726 -21.44306 -20.00884 -19.61633 -19.19491 -18.19775 -17.57806 -17.13023 -16.68443 -16.34098 -16.15316 -15.92355 -15.46954 -15.23571 -15.09221 -14.63314 -14.39694 -14.30807 -14.28070 -13.90749 -13.16957 -12.99339 -12.79927 -12.50072 -12.46900 -12.32797 -12.18798 -11.91196 -11.67052 -11.42040 -11.36563 -11.12329 -11.00041 -10.82003 -10.57617 -10.35477 -10.25489 -9.97807 -9.67338 -9.55421 -8.90627 -8.64006 -8.09253 -7.90295 -7.42044 -6.25303 -4.33083 0.88526 1.08143 2.22349 2.57762 2.83265 2.99160 3.23414 3.27245 3.31209 3.37217 3.52959 3.79920 3.90850 4.18859 4.32172 4.51759 4.65150 4.77103 4.85926 4.95954 5.08089 5.10911 5.17897 5.40818 5.52548 5.61657 5.71474 5.85287 5.94454 6.09641 6.11237 6.17005 6.23510 6.47130 6.49390 6.53736 6.61717 6.91872 6.97503 7.03573 7.09535 7.34239 7.47469 7.67178 7.84145 7.89369 8.06194 8.44949 8.65457 8.75288 9.33228 10.81814 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002077 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.972730 B =13477.627307 C =14164.267940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.116 3.884 4 C -0.218 4.218 5 C 0.124 3.876 6 O -0.499 6.499 7 C -0.159 4.159 8 C -0.067 4.067 9 C 0.136 3.864 10 N -0.676 5.676 11 C 0.714 3.286 12 O -0.553 6.553 13 N -0.638 5.638 14 C 0.280 3.720 15 C -0.288 4.288 16 C 0.092 3.908 17 C -0.089 4.089 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.321 5.321 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.137 0.863 33 H 0.391 0.609 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.411 0.589 37 H 0.408 0.592 38 H 0.161 0.839 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 13.958 -8.807 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.069 3.931 4 C -0.238 4.238 5 C 0.078 3.922 6 O -0.309 6.309 7 C -0.178 4.178 8 C -0.087 4.087 9 C 0.040 3.960 10 N -0.324 5.324 11 C 0.414 3.586 12 O -0.427 6.427 13 N -0.287 5.287 14 C 0.027 3.973 15 C -0.319 4.319 16 C -0.040 4.040 17 C -0.147 4.147 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 N -0.152 5.152 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.247 0.753 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.247 0.753 37 H 0.243 0.757 38 H 0.178 0.822 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.116 13.121 -9.131 25.695 hybrid contribution -1.034 -0.480 1.099 1.583 sum -21.150 12.642 -8.032 25.916 Atomic orbital electron populations 1.23074 0.77981 1.04149 1.01443 1.86055 1.21690 1.26124 1.88959 1.18554 0.90152 0.84725 0.99707 1.21216 1.00448 0.91264 1.10896 1.18140 0.89359 0.84979 0.99685 1.84823 1.72825 1.39667 1.33625 1.21275 0.92653 0.99214 1.04705 1.21171 1.01929 0.89125 0.96508 1.16806 0.86077 0.86484 1.06610 1.42303 1.21029 1.14813 1.54269 1.15547 0.80097 0.83495 0.79433 1.90861 1.68460 1.33181 1.50216 1.41300 1.20295 1.11530 1.55580 1.18624 0.87352 0.93833 0.97530 1.21231 0.97808 1.01288 1.11572 1.21062 0.97441 0.86103 0.99355 1.20375 0.96827 0.98590 0.98893 1.48984 1.16525 1.07052 1.37394 1.19681 0.80590 0.89020 0.96576 1.21291 1.05058 1.27282 1.03896 0.91797 1.24927 0.94638 0.95912 0.98303 1.69910 1.08721 1.35303 1.39018 0.86414 0.78030 0.79263 0.82966 1.20010 1.20966 1.19920 1.77261 0.98357 1.20180 1.19366 0.88026 0.92540 0.92532 0.84534 0.75342 0.84775 0.82503 0.75323 0.75663 0.82164 0.91079 0.89929 0.90613 0.93012 0.92768 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -2.88 10.05 -19.67 -0.20 -3.08 16 3 C 0.12 1.19 6.70 -39.09 -0.26 0.93 16 4 C -0.22 -1.97 8.97 -39.32 -0.35 -2.32 16 5 C 0.12 1.16 6.70 -39.24 -0.26 0.90 16 6 O -0.50 -3.93 13.50 -19.66 -0.27 -4.20 16 7 C -0.16 -1.60 9.98 -39.42 -0.39 -1.99 16 8 C -0.07 -0.78 8.70 -39.44 -0.34 -1.13 16 9 C 0.14 1.58 6.33 -83.40 -0.53 1.06 16 10 N -0.68 -7.75 5.20 -14.06 -0.07 -7.82 16 11 C 0.71 10.61 8.38 -86.92 -0.73 9.88 16 12 O -0.55 -9.60 10.89 5.27 0.06 -9.55 16 13 N -0.64 -9.90 5.45 -15.50 -0.08 -9.98 16 14 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 15 C -0.29 -5.87 9.52 -39.83 -0.38 -6.25 16 16 C 0.09 1.92 6.92 -82.28 -0.57 1.36 16 17 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 18 N -0.32 -7.50 3.59 -58.33 -0.21 -7.71 16 19 C 0.26 6.62 5.81 -5.20 -0.03 6.59 16 20 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 24 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 N -0.32 -7.38 12.59 31.44 0.40 -6.98 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 33 H 0.39 1.25 9.06 45.56 0.41 1.66 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.16 2.03 6.19 -52.49 -0.32 1.71 16 36 H 0.41 3.63 8.59 -40.82 -0.35 3.28 16 37 H 0.41 5.07 8.84 -40.82 -0.36 4.70 16 38 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -34.27 378.41 -7.65 -41.92 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.52 Total: 9.84 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -4.17 Total: 0.03 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.77 Total: -56.74 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.41 Total: -16.82 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.27 -7.65 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669840708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.019 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds