Wall clock time and date at job start Wed Apr 1 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37910 * 119.57154 * 2 1 4 4 C 1.39261 * 118.62650 * 179.70901 * 3 2 1 5 5 C 1.46128 * 106.40710 * 179.80981 * 4 3 2 6 6 C 1.34421 * 106.45799 * 0.40491 * 5 4 3 7 7 N 1.35455 * 133.83494 * 359.97438 * 3 2 1 8 8 C 1.46506 * 124.88959 * 0.02576 * 7 3 2 9 9 C 1.50704 * 109.47056 * 85.00275 * 8 7 3 10 10 O 1.21288 * 119.99903 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99969 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99348 * 224.28541 * 12 11 9 14 14 C 1.38949 * 120.00192 * 44.28558 * 12 11 9 15 15 N 1.31411 * 119.99898 * 18.20386 * 14 12 11 16 16 Si 1.86799 * 119.99752 * 198.20825 * 14 12 11 17 17 H 1.48503 * 109.47073 * 90.00048 * 16 14 12 18 18 H 1.48498 * 109.47078 * 209.99762 * 16 14 12 19 19 H 1.48496 * 109.47511 * 329.99994 * 16 14 12 20 20 C 1.46503 * 119.99798 * 359.97438 * 11 9 8 21 21 C 1.52999 * 117.49976 * 183.22737 * 20 11 9 22 22 C 1.53001 * 60.00212 * 252.51487 * 21 20 11 23 23 C 1.46101 * 118.80438 * 0.55190 * 4 3 2 24 24 O 1.21732 * 120.80772 * 179.72001 * 23 4 3 25 25 N 1.35153 * 118.37808 * 359.44859 * 23 4 3 26 26 C 1.46498 * 119.61068 * 180.27394 * 25 23 4 27 27 C 1.34327 * 120.77632 * 0.25283 * 25 23 4 28 28 O 1.21599 * 118.72055 * 180.02562 * 27 25 23 29 29 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47190 * 300.02311 * 1 2 3 31 31 H 1.08993 * 109.46861 * 60.02296 * 1 2 3 32 32 H 1.07996 * 126.77674 * 180.13280 * 5 4 3 33 33 H 1.08004 * 125.30673 * 179.72059 * 6 5 4 34 34 H 1.09004 * 109.46409 * 204.99415 * 8 7 3 35 35 H 1.08994 * 109.47440 * 324.99902 * 8 7 3 36 36 H 0.97001 * 119.99706 * 174.94216 * 15 14 12 37 37 H 1.09000 * 115.55235 * 328.94133 * 20 11 9 38 38 H 1.09002 * 117.49255 * 0.02562 * 21 20 11 39 39 H 1.08993 * 117.49793 * 145.02237 * 21 20 11 40 40 H 1.09001 * 117.49734 * 252.51154 * 22 21 20 41 41 H 1.09000 * 117.51655 * 107.47569 * 22 21 20 42 42 H 1.09003 * 109.47333 * 359.97438 * 26 25 23 43 43 H 1.09000 * 109.47085 * 120.00031 * 26 25 23 44 44 H 1.08996 * 109.47275 * 239.99763 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1457 1.1995 0.0000 4 6 3.5381 1.1765 0.0062 5 6 3.9739 2.5713 0.0000 6 6 2.8571 3.3193 -0.0001 7 7 1.7588 2.4976 -0.0004 8 6 0.3678 2.9575 -0.0005 9 6 -0.1479 2.9982 1.4149 10 8 0.5751 2.6744 2.3333 11 7 -1.4129 3.3934 1.6602 12 6 -1.8822 3.4299 2.9478 13 1 -2.8643 3.0429 3.1756 14 6 -1.0942 3.9647 3.9596 15 7 -0.0807 4.7457 3.6598 16 14 -1.4755 3.5735 5.7459 17 1 -0.7349 2.3528 6.1543 18 1 -1.0605 4.7138 6.6018 19 1 -2.9341 3.3428 5.9017 20 6 -2.2863 3.7840 0.5508 21 6 -3.6857 4.2948 0.8995 22 6 -3.5109 2.9094 0.2742 23 6 4.2209 -0.1151 0.0001 24 8 5.4366 -0.1777 0.0001 25 7 3.4698 -1.2388 0.0001 26 6 4.1264 -2.5484 0.0002 27 6 2.1283 -1.1688 0.0005 28 8 1.4893 -2.2034 0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8901 32 1 4.9924 2.9304 0.0003 33 1 2.8289 4.3989 0.0002 34 1 0.3154 3.9558 -0.4351 35 1 -0.2414 2.2722 -0.5897 36 1 0.4241 5.1778 4.3664 37 1 -1.7852 4.2337 -0.3064 38 1 -3.9563 4.3407 1.9544 39 1 -4.1054 5.0809 0.2719 40 1 -3.8156 2.7841 -0.7648 41 1 -3.6664 2.0433 0.9175 42 1 5.2080 -2.4126 -0.0002 43 1 3.8299 -3.1034 0.8902 44 1 3.8300 -3.1035 -0.8897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362631663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:07 Heat of formation + Delta-G solvation = 32.346779 kcal Electronic energy + Delta-G solvation = -31925.127691 eV Core-core repulsion = 27653.736045 eV Total energy + Delta-G solvation = -4271.391645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.32233 -40.40589 -38.85406 -38.61346 -36.34816 -35.89967 -35.03553 -33.29768 -32.60456 -31.14494 -29.36322 -28.03192 -27.35566 -26.33771 -24.70955 -23.32752 -22.51102 -21.95943 -21.51946 -20.44428 -20.05191 -18.68832 -17.55838 -17.34531 -16.97518 -16.74600 -16.32557 -15.76076 -15.40055 -15.09082 -14.95315 -14.77362 -14.60982 -14.20879 -14.04607 -13.80876 -13.42884 -13.24260 -12.99124 -12.78017 -12.75720 -12.60304 -12.32609 -12.02798 -11.92625 -11.66601 -11.30362 -11.11390 -11.02489 -10.88012 -10.79888 -10.34237 -10.28693 -10.22614 -10.04970 -10.00970 -9.65986 -9.05583 -8.75885 -8.19449 -7.55498 -7.32232 -6.34162 -4.11758 1.62030 1.84903 2.02228 2.70240 2.88176 3.15969 3.18761 3.25607 3.30317 3.65499 3.74789 4.04023 4.41864 4.51551 4.57632 4.80786 4.89496 5.04634 5.09546 5.19791 5.28862 5.30512 5.32501 5.36220 5.39538 5.42028 5.51170 5.55503 5.67137 5.69228 5.76493 5.78573 5.91213 6.00338 6.15199 6.19310 6.43025 6.47988 6.71595 6.72618 7.07816 7.14901 7.40711 7.49074 7.69880 8.00682 8.10837 8.76157 8.83482 9.36776 9.91652 10.74420 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003960 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.450493 B = 7069.095524 C = 7402.970684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.516 5.516 3 C 0.329 3.671 4 C -0.287 4.287 5 C -0.111 4.111 6 C 0.014 3.986 7 N -0.406 5.406 8 C 0.069 3.931 9 C 0.458 3.542 10 O -0.510 6.510 11 N -0.417 5.417 12 C -0.352 4.352 13 H 0.082 0.918 14 C 0.076 3.924 15 N -0.828 5.828 16 Si 0.914 3.086 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.062 3.938 21 C -0.168 4.168 22 C -0.206 4.206 23 C 0.589 3.411 24 O -0.519 6.519 25 N -0.561 5.561 26 C 0.086 3.914 27 C 0.716 3.284 28 O -0.551 6.551 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.267 0.733 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -3.363 -11.289 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.242 5.242 3 C 0.113 3.887 4 C -0.300 4.300 5 C -0.135 4.135 6 C -0.110 4.110 7 N -0.086 5.086 8 C -0.057 4.057 9 C 0.243 3.757 10 O -0.386 6.386 11 N -0.138 5.138 12 C -0.478 4.478 13 H 0.099 0.901 14 C -0.136 4.136 15 N -0.461 5.461 16 Si 0.740 3.260 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.044 4.044 21 C -0.205 4.205 22 C -0.245 4.245 23 C 0.385 3.615 24 O -0.395 6.395 25 N -0.305 5.305 26 C -0.055 4.055 27 C 0.419 3.581 28 O -0.425 6.425 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.195 0.805 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.415 -4.003 -10.712 11.443 hybrid contribution -0.531 0.261 0.946 1.116 sum -0.116 -3.742 -9.766 10.459 Atomic orbital electron populations 1.22290 0.75548 1.06350 1.03305 1.43616 1.08492 1.01511 1.70618 1.17383 0.89784 0.80606 1.00956 1.20156 0.89328 0.93957 1.26545 1.21213 0.98169 0.88270 1.05805 1.21715 0.83258 0.96245 1.09758 1.43061 1.07088 1.01999 1.56452 1.22290 0.79906 1.02750 1.00716 1.19763 0.84328 0.83318 0.88302 1.90651 1.54857 1.48660 1.44468 1.42708 1.09259 1.57342 1.04525 1.18876 1.03727 1.43534 0.81667 0.90066 1.25243 0.95112 0.93376 0.99826 1.69784 1.17981 1.24385 1.33930 0.86188 0.78450 0.78417 0.82902 1.20230 1.21098 1.19742 1.21805 0.87213 1.02053 0.93307 1.23060 0.98913 0.95862 1.02688 1.23354 1.04794 0.95574 1.00746 1.17480 0.86579 0.82758 0.74704 1.90776 1.12625 1.86846 1.49228 1.45988 1.05673 1.10329 1.68516 1.21824 0.99280 0.80910 1.03521 1.15150 0.81590 0.82935 0.78409 1.90971 1.65285 1.30399 1.55894 0.87468 0.89531 0.90916 0.82793 0.80473 0.87033 0.87885 0.92263 0.88067 0.87287 0.89575 0.89534 0.88872 0.88204 0.90578 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 9.06 59.85 0.54 1.50 16 2 N -0.52 -8.65 3.03 -127.97 -0.39 -9.04 16 3 C 0.33 5.76 7.49 -153.35 -1.15 4.61 16 4 C -0.29 -5.13 6.57 -103.20 -0.68 -5.81 16 5 C -0.11 -1.75 11.11 -37.77 -0.42 -2.17 16 6 C 0.01 0.22 11.32 -16.52 -0.19 0.03 16 7 N -0.41 -6.77 2.22 -116.98 -0.26 -7.03 16 8 C 0.07 1.08 4.40 -5.19 -0.02 1.06 16 9 C 0.46 9.86 5.69 -10.98 -0.06 9.80 16 10 O -0.51 -13.57 14.17 5.55 0.08 -13.49 16 11 N -0.42 -8.91 2.83 -107.73 -0.31 -9.22 16 12 C -0.35 -8.62 7.92 -14.93 -0.12 -8.73 16 13 H 0.08 1.94 7.26 -52.49 -0.38 1.56 16 14 C 0.08 1.98 4.39 -17.47 -0.08 1.91 16 15 N -0.83 -22.69 11.74 55.50 0.65 -22.04 16 16 Si 0.91 20.86 29.59 -169.99 -5.03 15.83 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C 0.06 1.01 5.87 -67.93 -0.40 0.62 16 21 C -0.17 -2.54 9.80 -26.73 -0.26 -2.80 16 22 C -0.21 -2.84 10.36 -26.73 -0.28 -3.11 16 23 C 0.59 10.53 7.63 -12.94 -0.10 10.43 16 24 O -0.52 -9.94 16.51 5.16 0.09 -9.85 16 25 N -0.56 -9.13 2.96 -129.94 -0.38 -9.51 16 26 C 0.09 1.08 9.93 59.85 0.59 1.67 16 27 C 0.72 12.27 8.10 -87.67 -0.71 11.56 16 28 O -0.55 -9.87 15.35 5.28 0.08 -9.79 16 29 H 0.11 1.47 6.79 -51.93 -0.35 1.12 16 30 H 0.09 1.46 6.56 -51.93 -0.34 1.12 16 31 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 32 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.18 2.24 8.06 -52.48 -0.42 1.81 16 34 H 0.11 1.49 7.54 -51.93 -0.39 1.10 16 35 H 0.10 1.34 5.46 -51.93 -0.28 1.06 16 36 H 0.27 7.14 8.32 -40.82 -0.34 6.80 16 37 H 0.10 1.38 6.96 -51.93 -0.36 1.02 16 38 H 0.11 1.90 6.72 -51.93 -0.35 1.55 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.10 1.19 6.91 -51.93 -0.36 0.83 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -34.18 365.31 -8.55 -42.72 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.26 Total: 5.37 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: -3.32 Total: 20.55 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.69 Total: -56.84 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: 0.24 Total: -33.13 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.18 -8.55 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362631663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.069 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds