Wall clock time and date at job start Wed Apr 1 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47558 * 263.60416 * 3 2 1 5 5 H 1.09001 * 112.96494 * 311.38477 * 4 3 2 6 6 C 1.53939 * 113.77351 * 179.69634 * 4 3 2 7 7 C 1.53947 * 86.29452 * 222.09431 * 6 4 3 8 8 N 1.47579 * 86.11426 * 23.60638 * 7 6 4 9 9 C 1.36941 * 134.49322 * 155.35516 * 8 7 6 10 10 H 1.07997 * 120.00391 * 184.25292 * 9 8 7 11 11 C 1.38819 * 119.99659 * 4.26055 * 9 8 7 12 12 N 1.31615 * 119.99914 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99661 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47526 * 60.00010 * 13 11 9 15 15 H 1.48500 * 109.47007 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47420 * 299.99614 * 13 11 9 17 17 C 1.34778 * 119.99981 * 180.02562 * 2 1 3 18 18 O 1.21636 * 119.99564 * 185.81169 * 17 2 1 19 19 C 1.47164 * 119.99967 * 5.80874 * 17 2 1 20 20 C 1.38400 * 126.88592 * 2.25592 * 19 17 2 21 21 C 1.39669 * 105.36090 * 179.97438 * 20 19 17 22 22 C 1.50695 * 126.07286 * 180.02562 * 21 20 19 23 23 F 1.39892 * 109.47606 * 184.99447 * 22 21 20 24 24 F 1.39904 * 109.47307 * 304.99853 * 22 21 20 25 25 F 1.39911 * 109.47054 * 64.99284 * 22 21 20 26 26 N 1.30862 * 107.85969 * 359.97438 * 21 20 19 27 27 N 1.28448 * 110.93171 * 0.02562 * 26 21 20 28 28 C 1.46496 * 125.19038 * 180.02562 * 27 26 21 29 29 H 1.09006 * 109.46890 * 234.25135 * 1 2 3 30 30 H 1.08997 * 109.47157 * 354.25078 * 1 2 3 31 31 H 1.09001 * 109.47046 * 114.25258 * 1 2 3 32 32 H 1.09003 * 109.47192 * 23.60783 * 3 2 1 33 33 H 1.09004 * 109.46938 * 143.60530 * 3 2 1 34 34 H 1.09005 * 113.74266 * 336.44462 * 6 4 3 35 35 H 1.09004 * 113.74536 * 107.64131 * 6 4 3 36 36 H 1.09001 * 113.76808 * 137.90427 * 7 6 4 37 37 H 1.08999 * 113.77083 * 269.19571 * 7 6 4 38 38 H 0.97004 * 119.99575 * 179.97438 * 12 11 9 39 39 H 1.07999 * 127.31724 * 359.95395 * 20 19 17 40 40 H 1.08997 * 109.47042 * 87.22742 * 28 27 26 41 41 H 1.09002 * 109.46537 * 207.22312 * 28 27 26 42 42 H 1.08997 * 109.47174 * 327.21990 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5917 1.6301 -1.4335 5 1 3.0579 0.8024 -1.9679 6 6 3.3639 2.9568 -1.5489 7 6 2.4943 3.2397 -2.7874 8 7 1.5204 2.3036 -2.1931 9 6 0.1665 2.1296 -2.3025 10 1 -0.3342 1.3919 -1.6932 11 6 -0.5624 2.9016 -3.1969 12 7 0.0478 3.8010 -3.9393 13 14 -2.4091 2.6639 -3.3466 14 1 -3.0508 2.9327 -2.0347 15 1 -2.9481 3.6023 -4.3635 16 1 -2.6964 1.2672 -3.7612 17 6 2.1389 -1.1672 -0.0005 18 8 3.3506 -1.1699 0.1061 19 6 1.4087 -2.4384 -0.1301 20 6 0.0449 -2.5992 -0.3023 21 6 -0.1591 -3.9791 -0.3714 22 6 -1.4845 -4.6720 -0.5565 23 9 -1.3043 -6.0561 -0.4627 24 9 -2.3744 -4.2492 0.4368 25 9 -2.0053 -4.3537 -1.8154 26 7 1.0052 -4.5637 -0.2480 27 7 1.9415 -3.6959 -0.1054 28 6 3.3636 -4.0075 0.0578 29 1 -0.3633 -0.6004 0.8341 30 1 -0.3633 1.0225 0.1029 31 1 -0.3633 -0.4221 -0.9370 32 1 1.5636 2.0542 0.4116 33 1 3.0955 1.1697 0.6098 34 1 3.1845 3.6426 -0.7208 35 1 4.4229 2.8302 -1.7739 36 1 2.1358 4.2673 -2.8471 37 1 2.9319 2.8870 -3.7213 38 1 -0.4615 4.3401 -4.5645 39 1 -0.7027 -1.8226 -0.3687 40 1 3.8302 -4.0999 -0.9229 41 1 3.8488 -3.2075 0.6171 42 1 3.4698 -4.9466 0.6008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085616217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:42 Heat of formation + Delta-G solvation = -20.172563 kcal Electronic energy + Delta-G solvation = -31626.316843 eV Core-core repulsion = 26810.791048 eV Total energy + Delta-G solvation = -4815.525795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.22663 -47.75357 -47.72378 -43.03254 -39.68921 -37.81643 -35.63365 -33.87971 -32.34623 -31.58968 -28.85704 -28.58494 -27.75845 -26.86477 -25.22306 -23.60464 -23.36187 -22.32355 -21.20529 -19.96514 -19.12467 -18.63503 -18.45040 -17.77942 -16.95517 -16.74256 -16.61569 -16.48696 -15.65467 -15.15496 -14.96710 -14.60036 -14.54017 -14.42356 -14.15246 -14.05928 -13.87287 -13.86640 -13.74688 -13.44912 -13.11981 -13.01243 -12.98134 -12.84553 -12.41100 -11.98145 -11.58098 -11.43668 -11.23169 -11.07691 -10.96529 -10.75108 -10.56313 -10.21034 -9.88136 -9.73710 -9.72313 -9.49110 -9.33769 -8.81870 -8.44046 -6.89492 -5.79861 -3.11256 0.99688 1.76376 1.81655 2.53322 3.03579 3.14326 3.34032 3.38504 3.41742 3.51949 3.77497 4.27793 4.28371 4.39896 4.48052 4.87692 4.94769 5.06891 5.07615 5.16685 5.21960 5.35058 5.41738 5.50918 5.62054 5.75739 5.82501 5.85643 5.97109 5.99095 6.15305 6.23555 6.37837 6.49437 6.65249 6.82089 7.21319 7.33239 7.41147 7.49184 7.55262 7.95458 8.06162 9.00358 9.68737 10.60241 11.37694 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.004113 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.347878 B = 6806.694412 C = 8883.814437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.577 5.577 3 C 0.120 3.880 4 C 0.126 3.874 5 H 0.045 0.955 6 C -0.158 4.158 7 C 0.163 3.837 8 N -0.601 5.601 9 C -0.231 4.231 10 H 0.087 0.913 11 C -0.006 4.006 12 N -0.918 5.918 13 Si 0.901 3.099 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.587 3.413 18 O -0.544 6.544 19 C -0.018 4.018 20 C -0.156 4.156 21 C -0.078 4.078 22 C 0.562 3.438 23 F -0.169 7.169 24 F -0.168 7.168 25 F -0.166 7.166 26 N -0.224 5.224 27 N -0.239 5.239 28 C 0.081 3.919 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.192 0.808 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -13.186 10.456 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.306 5.306 3 C -0.003 4.003 4 C 0.018 3.982 5 H 0.063 0.937 6 C -0.197 4.197 7 C 0.038 3.962 8 N -0.328 5.328 9 C -0.358 4.358 10 H 0.104 0.896 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.731 3.269 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.374 3.626 18 O -0.423 6.423 19 C -0.145 4.145 20 C -0.184 4.184 21 C -0.234 4.234 22 C 0.505 3.495 23 F -0.151 7.151 24 F -0.150 7.150 25 F -0.148 7.148 26 N -0.061 5.061 27 N -0.029 5.029 28 C -0.058 4.058 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.209 0.791 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.521 -14.145 10.420 17.918 hybrid contribution -1.689 0.355 -0.592 1.825 sum 1.831 -13.790 9.827 17.032 Atomic orbital electron populations 1.22632 0.79219 1.05071 1.01221 1.47436 1.07486 1.05448 1.70273 1.22127 0.96578 0.82618 0.98958 1.22605 0.89844 0.94538 0.91189 0.93741 1.23783 0.97441 0.97328 1.01184 1.22101 0.86237 0.96271 0.91620 1.46172 1.01073 1.34652 1.50865 1.19208 0.80668 1.17656 1.18266 0.89577 1.24802 0.97778 0.99279 0.98446 1.69813 1.34371 1.25073 1.27205 0.86385 0.85400 0.77560 0.77589 1.20968 1.21568 1.21066 1.16698 0.86184 0.82006 0.77745 1.90754 1.13008 1.86928 1.51640 1.21545 0.93023 0.88000 1.11951 1.22988 0.95534 0.95547 1.04337 1.21608 0.92672 0.93670 1.15463 1.16735 0.82393 0.76070 0.74252 1.93212 1.95372 1.30623 1.95856 1.93232 1.70082 1.89904 1.61738 1.93264 1.87778 1.92588 1.41145 1.73050 0.95948 1.20598 1.16477 1.45731 1.08255 1.02085 1.46797 1.22561 0.73032 1.05037 1.05205 0.91798 0.88354 0.90692 0.89137 0.90231 0.90656 0.92927 0.91338 0.95697 0.93642 0.79104 0.88997 0.86216 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 6.83 59.85 0.41 1.24 16 2 N -0.58 -8.90 2.89 -182.95 -0.53 -9.43 16 3 C 0.12 1.94 5.27 -4.04 -0.02 1.92 16 4 C 0.13 2.44 4.49 -66.87 -0.30 2.14 16 5 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 6 C -0.16 -2.84 7.86 -25.81 -0.20 -3.05 16 7 C 0.16 3.70 7.41 -2.97 -0.02 3.68 16 8 N -0.60 -14.17 3.57 -170.76 -0.61 -14.78 16 9 C -0.23 -5.81 10.41 -15.05 -0.16 -5.96 16 10 H 0.09 1.95 3.83 -52.49 -0.20 1.75 16 11 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 12 N -0.92 -26.28 11.49 55.49 0.64 -25.64 16 13 Si 0.90 20.90 29.55 -169.99 -5.02 15.87 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 C 0.59 9.19 7.60 -12.64 -0.10 9.09 16 18 O -0.54 -9.18 14.31 5.25 0.08 -9.11 16 19 C -0.02 -0.26 6.87 -82.06 -0.56 -0.82 16 20 C -0.16 -2.10 8.87 -38.99 -0.35 -2.45 16 21 C -0.08 -1.06 6.50 -82.47 -0.54 -1.60 16 22 C 0.56 7.08 3.51 36.00 0.13 7.20 16 23 F -0.17 -2.15 17.14 2.25 0.04 -2.11 16 24 F -0.17 -2.01 17.30 2.25 0.04 -1.97 16 25 F -0.17 -2.19 17.30 2.25 0.04 -2.15 16 26 N -0.22 -3.12 11.68 33.63 0.39 -2.73 16 27 N -0.24 -3.16 3.75 -63.89 -0.24 -3.40 16 28 C 0.08 0.77 10.88 59.84 0.65 1.42 16 29 H 0.06 0.69 6.75 -51.93 -0.35 0.34 16 30 H 0.10 1.40 6.63 -51.93 -0.34 1.06 16 31 H 0.07 1.08 5.69 -51.93 -0.30 0.78 16 32 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16 33 H 0.08 1.20 7.54 -51.93 -0.39 0.81 16 34 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.70 7.36 -51.93 -0.38 1.32 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.19 2.26 4.31 -52.49 -0.23 2.04 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.12 1.20 6.20 -51.93 -0.32 0.88 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -31.19 355.50 -5.56 -36.75 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.58 Total: 0.80 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -1.15 Total: 12.55 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.35 Total: -55.99 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.12 Total: -6.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.19 -5.56 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085616217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.578 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds