Wall clock time and date at job start Wed Apr 1 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47323 * 2 1 4 4 C 1.34124 * 125.69748 * 125.28889 * 3 2 1 5 5 C 1.38618 * 107.33757 * 180.12911 * 4 3 2 6 6 C 1.46944 * 126.48781 * 179.86905 * 5 4 3 7 7 O 1.21427 * 120.00162 * 359.71568 * 6 5 4 8 8 C 1.49215 * 119.99879 * 179.71118 * 6 5 4 9 9 O 1.21308 * 120.00281 * 359.97438 * 8 6 5 10 10 O 1.34465 * 120.00398 * 180.02562 * 8 6 5 11 11 C 1.36125 * 117.00552 * 179.97438 * 10 8 6 12 12 C 1.40214 * 126.09373 * 269.99980 * 11 10 8 13 13 C 1.50697 * 125.89063 * 359.97438 * 12 11 10 14 14 N 1.30846 * 108.21648 * 180.02562 * 12 11 10 15 15 N 1.40062 * 108.32394 * 359.74358 * 14 12 11 16 16 C 1.46500 * 126.01421 * 180.29490 * 15 14 12 17 17 C 1.50702 * 109.46687 * 270.15330 * 16 15 14 18 18 H 1.07994 * 120.00029 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99729 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00076 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99656 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47450 * 90.00537 * 21 19 17 23 23 H 1.48506 * 109.46874 * 210.00127 * 21 19 17 24 24 H 1.48496 * 109.47630 * 329.99870 * 21 19 17 25 25 C 1.35215 * 107.97711 * 0.42187 * 15 14 12 26 26 C 1.50703 * 126.16821 * 179.84787 * 25 15 14 27 27 C 1.41558 * 107.02049 * 359.61051 * 5 4 3 28 28 N 1.30354 * 107.99215 * 0.24061 * 27 5 4 29 29 H 1.08999 * 109.46893 * 60.00119 * 1 2 3 30 30 H 1.09003 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47570 * 299.99683 * 1 2 3 32 32 H 1.08997 * 109.47570 * 240.00317 * 2 1 3 33 33 H 1.09001 * 109.47340 * 120.00132 * 2 1 3 34 34 H 1.08000 * 126.33078 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.46866 * 90.00030 * 13 12 11 36 36 H 1.08997 * 109.47527 * 210.00348 * 13 12 11 37 37 H 1.08998 * 109.47148 * 330.00273 * 13 12 11 38 38 H 1.09000 * 109.46893 * 30.15121 * 16 15 14 39 39 H 1.08994 * 109.47379 * 150.15675 * 16 15 14 40 40 H 0.96998 * 119.99680 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47152 * 269.71665 * 26 25 15 42 42 H 1.09001 * 109.46980 * 149.71766 * 26 25 15 43 43 H 1.09004 * 109.47113 * 29.71746 * 26 25 15 44 44 H 1.08004 * 126.00439 * 180.22627 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8725 1.9093 0.8891 5 6 3.0710 3.2346 0.5344 6 6 3.9294 4.2054 1.2272 7 8 4.5471 3.8713 2.2178 8 6 4.0420 5.6017 0.7133 9 8 3.4254 5.9354 -0.2766 10 8 4.8279 6.4900 1.3468 11 6 4.8860 7.7461 0.8255 12 6 5.7959 8.1981 -0.1409 13 6 6.8827 7.3758 -0.7841 14 7 5.5393 9.4574 -0.3870 15 7 4.4550 9.8494 0.4082 16 6 3.8434 11.1803 0.4352 17 6 4.5331 12.0291 1.4720 18 1 5.3461 11.6184 2.0523 19 6 4.1270 13.3304 1.6788 20 7 3.1374 13.8307 0.9717 21 14 4.9825 14.3827 2.9634 22 1 6.1217 15.1003 2.3368 23 1 4.0199 15.3694 3.5160 24 1 5.4858 13.5155 4.0586 25 6 4.0739 8.7842 1.1487 26 6 2.9463 8.7534 2.1482 27 6 2.2949 3.4739 -0.6250 28 7 1.6764 2.3680 -0.9309 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3207 1.3974 1.7278 35 1 6.4931 6.8985 -1.6832 36 1 7.7190 8.0226 -1.0493 37 1 7.2220 6.6115 -0.0849 38 1 3.9466 11.6475 -0.5441 39 1 2.7863 11.0894 0.6849 40 1 2.8515 14.7461 1.1176 41 1 3.3263 9.0248 3.1331 42 1 2.5218 7.7502 2.1862 43 1 2.1753 9.4631 1.8480 44 1 2.2269 4.4087 -1.1617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539280708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:02 Heat of formation + Delta-G solvation = 44.252181 kcal Electronic energy + Delta-G solvation = -29499.206438 eV Core-core repulsion = 25228.331050 eV Total energy + Delta-G solvation = -4270.875388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83192 -41.26581 -40.00553 -38.65663 -36.70549 -34.96729 -34.03318 -32.60935 -31.00809 -30.87188 -30.34192 -29.08942 -27.28656 -26.04529 -25.78159 -24.25825 -23.12289 -22.30730 -21.11408 -20.36273 -19.47681 -19.23673 -17.98083 -17.58409 -16.94031 -16.68015 -16.22752 -15.92302 -15.63011 -15.21870 -14.84891 -14.60563 -14.43420 -14.28112 -14.00458 -13.71344 -13.27387 -13.23455 -12.99363 -12.98042 -12.76435 -12.65158 -12.52828 -12.07980 -12.05810 -12.02245 -11.79238 -11.67777 -11.56890 -11.09106 -11.03643 -10.99959 -10.82564 -10.33480 -10.01334 -9.99195 -9.79251 -9.74794 -9.14212 -8.68642 -8.40003 -7.75221 -6.30799 -4.38754 0.44397 1.47329 1.82572 2.15092 2.19652 2.60654 3.14214 3.19160 3.20233 3.26496 3.29071 3.39102 3.93628 4.25227 4.26372 4.35805 4.54038 4.59037 4.65865 4.70936 4.97697 5.03764 5.07032 5.09351 5.23365 5.27861 5.33813 5.50909 5.57686 5.72681 5.89015 5.93708 6.06349 6.10131 6.15202 6.26725 6.34190 6.45182 6.49519 6.75937 6.91526 6.96181 7.16833 7.23910 7.58351 7.77694 7.80569 7.99857 8.40123 8.67155 9.27973 10.77017 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.002201 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.329162 B =12719.730935 C =13077.855815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 N -0.357 5.357 4 C 0.141 3.859 5 C -0.318 4.318 6 C 0.454 3.546 7 O -0.415 6.415 8 C 0.415 3.585 9 O -0.461 6.461 10 O -0.227 6.227 11 C -0.114 4.114 12 C 0.064 3.936 13 C -0.069 4.069 14 N -0.278 5.278 15 N -0.311 5.311 16 C 0.257 3.743 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.111 3.889 26 C -0.086 4.086 27 C 0.114 3.886 28 N -0.300 5.300 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -27.735 -0.112 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.003 3.997 3 N -0.134 5.134 4 C -0.012 4.012 5 C -0.330 4.330 6 C 0.327 3.673 7 O -0.287 6.287 8 C 0.255 3.745 9 O -0.346 6.346 10 O -0.137 6.137 11 C -0.168 4.168 12 C -0.102 4.102 13 C -0.127 4.127 14 N -0.102 5.102 15 N -0.091 5.091 16 C 0.140 3.860 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 C -0.024 4.024 26 C -0.144 4.144 27 C -0.074 4.074 28 N -0.118 5.118 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.209 0.791 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.187 -27.160 -1.429 27.518 hybrid contribution 0.656 0.555 1.568 1.788 sum -3.531 -26.605 0.139 26.839 Atomic orbital electron populations 1.22064 0.93135 1.03257 1.04018 1.21901 0.96698 0.76590 1.04474 1.48792 1.33299 1.10988 1.20333 1.23218 0.90799 0.93190 0.94040 1.20240 1.13090 0.94778 1.04933 1.20443 0.79293 0.84487 0.83100 1.90625 1.37308 1.78963 1.21798 1.24803 0.78203 0.88606 0.82924 1.90708 1.41001 1.79012 1.23900 1.84871 1.59739 1.17953 1.51125 1.17698 1.05895 0.83019 1.10185 1.22273 0.98512 0.92975 0.96452 1.20092 0.94931 0.97933 0.99788 1.77394 1.04198 1.11815 1.16833 1.49204 1.22376 1.10854 1.26684 1.19829 0.93249 0.72819 1.00128 1.21285 1.18894 0.97130 1.20503 0.91581 1.24931 0.94921 0.97371 0.96491 1.69918 1.26760 1.16103 1.39967 0.86321 0.79262 0.79804 0.81121 1.20247 1.20841 1.19585 1.20910 0.96993 0.88424 0.96026 1.20380 0.94568 1.02619 0.96877 1.24786 0.91302 0.97508 0.93774 1.77250 1.24232 0.97213 1.13148 0.90740 0.90319 0.91824 0.88992 0.88075 0.79068 0.91051 0.90689 0.90902 0.92411 0.92606 0.92140 0.89514 0.91256 0.90103 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.09 37.16 0.37 -0.29 16 2 C 0.12 0.48 7.20 -4.04 -0.03 0.45 16 3 N -0.36 -2.84 3.64 -60.68 -0.22 -3.06 16 4 C 0.14 1.13 11.27 -16.41 -0.18 0.95 16 5 C -0.32 -3.52 6.12 -104.97 -0.64 -4.16 16 6 C 0.45 5.96 7.20 -31.49 -0.23 5.73 16 7 O -0.42 -5.91 17.52 -7.93 -0.14 -6.05 16 8 C 0.41 6.53 7.95 35.30 0.28 6.81 16 9 O -0.46 -7.79 14.01 -19.12 -0.27 -8.06 16 10 O -0.23 -4.06 9.99 -29.83 -0.30 -4.36 16 11 C -0.11 -2.30 5.35 -39.75 -0.21 -2.52 16 12 C 0.06 1.29 7.23 -82.27 -0.59 0.70 16 13 C -0.07 -1.06 10.44 36.00 0.38 -0.68 16 14 N -0.28 -6.48 12.57 33.74 0.42 -6.06 16 15 N -0.31 -7.37 3.60 -58.15 -0.21 -7.58 16 16 C 0.26 6.52 6.00 -5.19 -0.03 6.49 16 17 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 18 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 21 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.11 2.33 6.95 -82.01 -0.57 1.76 16 26 C -0.09 -1.50 10.09 36.01 0.36 -1.14 16 27 C 0.11 1.32 11.13 -16.91 -0.19 1.13 16 28 N -0.30 -3.28 12.31 30.90 0.38 -2.90 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.10 8.06 -51.93 -0.42 -0.32 16 34 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.06 1.40 7.05 -51.93 -0.37 1.03 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.39 7.08 -51.93 -0.37 1.03 16 44 H 0.21 2.46 6.26 -52.48 -0.33 2.13 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -33.46 393.70 -6.06 -39.53 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.68 Total: -1.22 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.71 Total: 1.91 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 1.11 Total: -43.63 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.70 Total: -18.46 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.46 -6.06 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539280708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.778 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds