Wall clock time and date at job start Wed Apr 1 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00311 * 2 1 4 4 C 1.52996 * 109.46625 * 264.27677 * 3 2 1 5 5 H 1.08998 * 112.96978 * 296.29506 * 4 3 2 6 6 C 1.53948 * 113.77171 * 67.98348 * 4 3 2 7 7 C 1.53952 * 86.29150 * 137.90193 * 6 4 3 8 8 N 1.47585 * 113.76795 * 164.62354 * 4 3 2 9 9 C 1.36945 * 134.48905 * 41.06469 * 8 4 3 10 10 H 1.07999 * 119.99952 * 338.79382 * 9 8 4 11 11 C 1.38808 * 119.99714 * 158.79988 * 9 8 4 12 12 N 1.31623 * 119.99999 * 169.88018 * 11 9 8 13 13 Si 1.86809 * 120.00079 * 349.87459 * 11 9 8 14 14 H 1.48499 * 109.46842 * 84.51033 * 13 11 9 15 15 H 1.48503 * 109.46846 * 204.50878 * 13 11 9 16 16 H 1.48493 * 109.47248 * 324.51133 * 13 11 9 17 17 C 1.34781 * 119.99502 * 179.97438 * 2 1 3 18 18 O 1.21601 * 119.99916 * 181.61749 * 17 2 1 19 19 C 1.47428 * 119.99886 * 1.62376 * 17 2 1 20 20 C 1.41286 * 126.41928 * 345.74115 * 19 17 2 21 21 N 1.30448 * 108.02533 * 180.02562 * 20 19 17 22 22 N 1.39934 * 108.89403 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.75100 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47489 * 304.97415 * 23 22 21 25 25 F 1.39900 * 109.47138 * 59.99804 * 24 23 22 26 26 F 1.39893 * 109.47711 * 180.02562 * 24 23 22 27 27 F 1.39906 * 109.47033 * 300.00186 * 24 23 22 28 28 C 1.34254 * 108.49490 * 359.97438 * 22 21 20 29 29 H 1.09000 * 109.46883 * 264.45524 * 1 2 3 30 30 H 1.09005 * 109.46818 * 24.44942 * 1 2 3 31 31 H 1.08991 * 109.47280 * 144.44611 * 1 2 3 32 32 H 1.08996 * 109.46691 * 24.27713 * 3 2 1 33 33 H 1.09001 * 109.47057 * 144.28098 * 3 2 1 34 34 H 1.08999 * 113.73871 * 252.24423 * 6 4 3 35 35 H 1.08998 * 113.74103 * 23.45370 * 6 4 3 36 36 H 1.09006 * 113.76423 * 90.69523 * 7 6 4 37 37 H 1.08997 * 113.76681 * 221.97687 * 7 6 4 38 38 H 0.97005 * 119.99744 * 179.97438 * 12 11 9 39 39 H 1.08000 * 125.98397 * 359.75342 * 20 19 17 40 40 H 1.09002 * 109.47130 * 64.97739 * 23 22 21 41 41 H 1.09002 * 109.47327 * 184.97284 * 23 22 21 42 42 H 1.07999 * 126.29121 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5772 1.6383 -1.4353 5 1 3.2611 0.9230 -1.8921 6 6 1.3718 1.9981 -2.3229 7 6 2.2419 3.1460 -2.8664 8 7 2.9926 3.0452 -1.5972 9 6 3.7630 3.9087 -0.8649 10 1 3.9299 3.7247 0.1862 11 6 4.3291 5.0204 -1.4735 12 7 4.8992 5.9531 -0.7404 13 14 4.2820 5.1926 -3.3330 14 1 2.9866 5.7926 -3.7418 15 1 5.3956 6.0689 -3.7772 16 1 4.4264 3.8534 -3.9580 17 6 2.1389 -1.1673 0.0005 18 8 3.3545 -1.1676 0.0302 19 6 1.4020 -2.4437 -0.0351 20 6 0.0219 -2.6227 0.2087 21 7 -0.2488 -3.8926 0.0838 22 7 0.9280 -4.5769 -0.2406 23 6 1.0447 -6.0199 -0.4656 24 6 0.4992 -6.7715 0.7503 25 9 -0.8457 -6.4365 0.9408 26 9 0.6112 -8.1493 0.5358 27 9 1.2338 -6.4157 1.8866 28 6 1.9316 -3.6881 -0.3120 29 1 -0.3633 -0.0993 1.0229 30 1 -0.3633 0.9356 -0.4254 31 1 -0.3633 -0.8360 -0.5975 32 1 1.5680 2.0517 0.4225 33 1 3.1019 1.1661 0.6000 34 1 1.1327 1.2385 -3.0671 35 1 0.4992 2.3340 -1.7628 36 1 2.8283 2.8749 -3.7444 37 1 1.7032 4.0857 -2.9883 38 1 5.2952 6.7298 -1.1658 39 1 -0.6843 -1.8449 0.4594 40 1 0.4724 -6.2970 -1.3509 41 1 2.0926 -6.2809 -0.6140 42 1 2.9636 -3.9065 -0.5436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:53 Heat of formation + Delta-G solvation = -18.884130 kcal Electronic energy + Delta-G solvation = -30355.099553 eV Core-core repulsion = 25539.629629 eV Total energy + Delta-G solvation = -4815.469925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.64419 -48.20742 -48.06238 -41.85267 -39.50438 -37.99284 -35.43601 -34.52852 -32.20660 -30.84782 -30.09610 -28.40043 -28.22821 -26.64686 -24.58535 -23.56778 -22.98625 -21.91877 -21.56001 -19.76556 -19.28019 -19.07746 -19.03276 -18.29151 -17.22265 -16.77086 -16.32538 -15.99395 -15.79494 -15.33107 -15.14295 -14.97307 -14.93809 -14.67662 -14.53642 -14.27135 -14.21775 -14.19897 -13.75679 -13.53235 -13.44864 -13.13108 -12.94964 -12.88011 -12.64162 -12.36760 -11.88041 -11.80288 -11.56057 -11.38629 -11.02818 -10.69554 -10.19999 -10.08658 -10.05860 -9.90674 -9.73053 -9.38658 -9.10253 -8.85403 -8.35859 -7.02989 -5.87401 -3.24602 1.05805 1.50745 1.87906 2.09613 3.02073 3.10721 3.27517 3.36756 3.42500 3.47138 3.48325 3.54869 4.03229 4.24056 4.34105 4.43255 4.57640 4.71113 4.77217 4.97006 5.07862 5.22360 5.28463 5.30120 5.38778 5.58755 5.75205 5.84409 5.94027 5.98982 6.14937 6.19001 6.27894 6.39024 6.46487 6.56027 6.65050 7.05965 7.07979 7.34383 7.56847 8.35174 8.41430 8.74188 9.68617 10.36497 11.29702 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.405889 B =13323.793982 C =13438.722924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.122 3.878 4 C 0.132 3.868 5 H 0.052 0.948 6 C -0.144 4.144 7 C 0.096 3.904 8 N -0.616 5.616 9 C -0.227 4.227 10 H 0.097 0.903 11 C 0.017 3.983 12 N -0.921 5.921 13 Si 0.887 3.113 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.271 1.271 17 C 0.588 3.412 18 O -0.540 6.540 19 C -0.272 4.272 20 C 0.074 3.926 21 N -0.288 5.288 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.446 3.554 25 F -0.163 7.163 26 F -0.176 7.176 27 F -0.176 7.176 28 C 0.133 3.867 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.262 0.738 39 H 0.212 0.788 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 -26.993 -0.168 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C -0.001 4.001 4 C 0.024 3.976 5 H 0.070 0.930 6 C -0.182 4.182 7 C -0.029 4.029 8 N -0.345 5.345 9 C -0.353 4.353 10 H 0.115 0.885 11 C -0.180 4.180 12 N -0.566 5.566 13 Si 0.718 3.282 14 H -0.213 1.213 15 H -0.228 1.228 16 H -0.196 1.196 17 C 0.376 3.624 18 O -0.418 6.418 19 C -0.287 4.287 20 C -0.114 4.114 21 N -0.106 5.106 22 N -0.160 5.160 23 C -0.030 4.030 24 C 0.390 3.610 25 F -0.144 7.144 26 F -0.158 7.158 27 F -0.158 7.158 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.649 -27.706 0.042 30.886 hybrid contribution 0.704 0.691 -0.988 1.396 sum -12.945 -27.015 -0.946 29.971 Atomic orbital electron populations 1.22420 0.80419 1.04023 1.01349 1.47554 1.06585 1.06096 1.73152 1.21697 0.97248 0.82568 0.98567 1.22520 0.93193 0.88511 0.93331 0.93003 1.23588 0.97512 0.98094 0.98995 1.22826 0.92126 0.97233 0.90701 1.46537 1.58602 1.06477 1.22838 1.18735 1.22941 1.01300 0.92358 0.88543 1.25033 0.97865 0.97542 0.97609 1.69732 1.41819 1.10484 1.34591 0.86769 0.76727 0.77468 0.87286 1.21270 1.22754 1.19605 1.17191 0.86439 0.82335 0.76407 1.90815 1.13214 1.87153 1.50594 1.20384 0.94445 0.94357 1.19500 1.25157 0.95558 0.94024 0.96710 1.77388 1.04273 1.06392 1.22527 1.47984 1.07088 1.05664 1.55275 1.22848 1.07054 0.76759 0.96345 1.20527 0.77232 0.77857 0.85363 1.93291 1.33542 1.91899 1.95707 1.93231 1.95895 1.31857 1.94770 1.93252 1.76958 1.91546 1.54023 1.23008 0.94636 0.88139 0.95666 0.92303 0.90197 0.90243 0.89641 0.90042 0.92673 0.90299 0.93935 0.92627 0.92785 0.77202 0.84772 0.83791 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 8.55 59.85 0.51 1.05 16 2 N -0.60 -8.17 2.81 -182.85 -0.51 -8.68 16 3 C 0.12 2.11 5.23 -4.04 -0.02 2.08 16 4 C 0.13 2.58 4.52 -66.86 -0.30 2.28 16 5 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.14 -2.38 7.39 -25.79 -0.19 -2.57 16 7 C 0.10 2.02 5.81 -2.85 -0.02 2.00 16 8 N -0.62 -14.90 3.30 -169.72 -0.56 -15.46 16 9 C -0.23 -6.46 10.96 -15.06 -0.16 -6.63 16 10 H 0.10 2.91 8.06 -52.49 -0.42 2.48 16 11 C 0.02 0.51 5.50 -17.43 -0.10 0.41 16 12 N -0.92 -28.89 13.97 55.49 0.78 -28.12 16 13 Si 0.89 22.95 25.18 -169.99 -4.28 18.67 16 14 H -0.29 -7.15 6.96 56.52 0.39 -6.76 16 15 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 16 H -0.27 -6.83 5.93 56.52 0.34 -6.50 16 17 C 0.59 8.66 7.62 -12.52 -0.10 8.56 16 18 O -0.54 -10.14 16.59 5.28 0.09 -10.06 16 19 C -0.27 -3.06 5.90 -105.07 -0.62 -3.68 16 20 C 0.07 0.69 9.80 -16.98 -0.17 0.52 16 21 N -0.29 -2.86 11.41 30.86 0.35 -2.51 16 22 N -0.38 -3.05 3.57 -60.81 -0.22 -3.27 16 23 C 0.09 0.39 6.49 -4.04 -0.03 0.37 16 24 C 0.45 2.97 3.28 37.16 0.12 3.09 16 25 F -0.16 -1.47 16.26 2.25 0.04 -1.43 16 26 F -0.18 -1.09 17.32 2.25 0.04 -1.05 16 27 F -0.18 -1.55 17.24 2.25 0.04 -1.51 16 28 C 0.13 1.21 11.28 -16.56 -0.19 1.02 16 29 H 0.06 0.42 7.57 -51.93 -0.39 0.02 16 30 H 0.08 0.68 6.81 -51.93 -0.35 0.33 16 31 H 0.08 0.58 4.90 -51.93 -0.25 0.32 16 32 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 33 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.17 7.12 -51.93 -0.37 0.80 16 36 H 0.04 0.92 6.47 -51.93 -0.34 0.58 16 37 H 0.06 1.18 7.27 -51.93 -0.38 0.81 16 38 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 39 H 0.21 1.41 4.71 -52.49 -0.25 1.16 16 40 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.14 0.10 8.06 -51.93 -0.42 -0.31 16 42 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -37.53 357.34 -5.00 -42.53 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.88 Total: -3.02 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.25 Total: 8.52 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.16 Total: -58.04 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.11 Total: -3.99 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.28 Total: 18.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.53 -5.00 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.644 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds