Wall clock time and date at job start Wed Apr 1 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 120.00311 * 2 1 4 4 C 1.52996 * 109.46625 * 264.27677 * 3 2 1 5 5 H 1.08998 * 112.96978 * 296.29506 * 4 3 2 6 6 C 1.53948 * 113.77171 * 67.98348 * 4 3 2 7 7 C 1.53952 * 86.29150 * 137.90193 * 6 4 3 8 8 N 1.47585 * 113.76795 * 164.62354 * 4 3 2 9 9 C 1.36945 * 134.48905 * 41.06469 * 8 4 3 10 10 H 1.07999 * 119.99952 * 338.79382 * 9 8 4 11 11 C 1.38808 * 119.99714 * 158.79988 * 9 8 4 12 12 N 1.31623 * 119.99999 * 169.88018 * 11 9 8 13 13 Si 1.86809 * 120.00079 * 349.87459 * 11 9 8 14 14 H 1.48499 * 109.46842 * 84.51033 * 13 11 9 15 15 H 1.48503 * 109.46846 * 204.50878 * 13 11 9 16 16 H 1.48493 * 109.47248 * 324.51133 * 13 11 9 17 17 C 1.34781 * 119.99502 * 179.97438 * 2 1 3 18 18 O 1.21601 * 119.99916 * 181.61749 * 17 2 1 19 19 C 1.47428 * 119.99886 * 1.62376 * 17 2 1 20 20 C 1.41286 * 126.41928 * 345.74115 * 19 17 2 21 21 N 1.30448 * 108.02533 * 180.02562 * 20 19 17 22 22 N 1.39934 * 108.89403 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.75100 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47489 * 304.97415 * 23 22 21 25 25 F 1.39900 * 109.47138 * 59.99804 * 24 23 22 26 26 F 1.39893 * 109.47711 * 180.02562 * 24 23 22 27 27 F 1.39906 * 109.47033 * 300.00186 * 24 23 22 28 28 C 1.34254 * 108.49490 * 359.97438 * 22 21 20 29 29 H 1.09000 * 109.46883 * 264.45524 * 1 2 3 30 30 H 1.09005 * 109.46818 * 24.44942 * 1 2 3 31 31 H 1.08991 * 109.47280 * 144.44611 * 1 2 3 32 32 H 1.08996 * 109.46691 * 24.27713 * 3 2 1 33 33 H 1.09001 * 109.47057 * 144.28098 * 3 2 1 34 34 H 1.08999 * 113.73871 * 252.24423 * 6 4 3 35 35 H 1.08998 * 113.74103 * 23.45370 * 6 4 3 36 36 H 1.09006 * 113.76423 * 90.69523 * 7 6 4 37 37 H 1.08997 * 113.76681 * 221.97687 * 7 6 4 38 38 H 0.97005 * 119.99744 * 179.97438 * 12 11 9 39 39 H 1.08000 * 125.98397 * 359.75342 * 20 19 17 40 40 H 1.09002 * 109.47130 * 64.97739 * 23 22 21 41 41 H 1.09002 * 109.47327 * 184.97284 * 23 22 21 42 42 H 1.07999 * 126.29121 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5772 1.6383 -1.4353 5 1 3.2611 0.9230 -1.8921 6 6 1.3718 1.9981 -2.3229 7 6 2.2419 3.1460 -2.8664 8 7 2.9926 3.0452 -1.5972 9 6 3.7630 3.9087 -0.8649 10 1 3.9299 3.7247 0.1862 11 6 4.3291 5.0204 -1.4735 12 7 4.8992 5.9531 -0.7404 13 14 4.2820 5.1926 -3.3330 14 1 2.9866 5.7926 -3.7418 15 1 5.3956 6.0689 -3.7772 16 1 4.4264 3.8534 -3.9580 17 6 2.1389 -1.1673 0.0005 18 8 3.3545 -1.1676 0.0302 19 6 1.4020 -2.4437 -0.0351 20 6 0.0219 -2.6227 0.2087 21 7 -0.2488 -3.8926 0.0838 22 7 0.9280 -4.5769 -0.2406 23 6 1.0447 -6.0199 -0.4656 24 6 0.4992 -6.7715 0.7503 25 9 -0.8457 -6.4365 0.9408 26 9 0.6112 -8.1493 0.5358 27 9 1.2338 -6.4157 1.8866 28 6 1.9316 -3.6881 -0.3120 29 1 -0.3633 -0.0993 1.0229 30 1 -0.3633 0.9356 -0.4254 31 1 -0.3633 -0.8360 -0.5975 32 1 1.5680 2.0517 0.4225 33 1 3.1019 1.1661 0.6000 34 1 1.1327 1.2385 -3.0671 35 1 0.4992 2.3340 -1.7628 36 1 2.8283 2.8749 -3.7444 37 1 1.7032 4.0857 -2.9883 38 1 5.2952 6.7298 -1.1658 39 1 -0.6843 -1.8449 0.4594 40 1 0.4724 -6.2970 -1.3509 41 1 2.0926 -6.2809 -0.6140 42 1 2.9636 -3.9065 -0.5436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:52 Heat of formation + Delta-G solvation = -45.876819 kcal Electronic energy + Delta-G solvation = -30356.270044 eV Core-core repulsion = 25539.629629 eV Total energy + Delta-G solvation = -4816.640415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.18745 -48.74274 -48.65175 -42.56773 -40.73116 -39.49827 -36.55200 -35.15485 -34.36046 -31.65892 -30.99536 -30.26837 -29.20532 -27.62531 -25.46975 -24.91490 -24.50639 -22.88980 -22.24384 -21.08372 -20.47360 -19.70054 -19.61455 -19.03841 -18.66793 -17.84783 -17.44759 -17.14838 -16.97782 -16.72461 -16.11742 -15.70185 -15.65297 -15.47831 -15.36948 -15.17474 -15.09966 -14.85091 -14.82387 -14.79162 -14.48191 -14.28090 -14.02047 -13.82195 -13.77848 -13.70981 -13.26389 -13.18656 -12.86043 -12.61793 -12.24512 -12.10499 -11.98109 -11.82737 -11.69151 -11.23969 -10.97896 -10.83107 -10.72197 -9.91567 -9.56950 -9.00826 -8.13224 -5.46455 0.35676 0.97160 1.11169 1.29823 1.37084 1.44426 1.62170 2.01339 2.41763 2.43031 2.59593 2.86746 3.04709 3.07945 3.17088 3.52162 3.72025 3.74109 3.87379 3.95294 4.04181 4.19762 4.29501 4.32123 4.37824 4.42967 4.59413 4.61846 4.74390 4.78172 4.91965 4.95827 5.01418 5.07694 5.26883 5.32829 5.53784 5.58088 5.66185 6.19479 6.37737 6.52645 6.56339 7.27307 7.46467 8.29824 9.08101 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.002101 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.405889 B =13323.793982 C =13438.722924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.599 5.599 3 C 0.136 3.864 4 C 0.129 3.871 5 H 0.033 0.967 6 C -0.108 4.108 7 C 0.084 3.916 8 N -0.643 5.643 9 C -0.213 4.213 10 H 0.061 0.939 11 C -0.049 4.049 12 N -0.971 5.971 13 Si 0.951 3.049 14 H -0.268 1.268 15 H -0.308 1.308 16 H -0.262 1.262 17 C 0.585 3.415 18 O -0.595 6.595 19 C -0.300 4.300 20 C 0.082 3.918 21 N -0.308 5.308 22 N -0.374 5.374 23 C 0.091 3.909 24 C 0.443 3.557 25 F -0.180 7.180 26 F -0.173 7.173 27 F -0.192 7.192 28 C 0.146 3.854 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.234 0.766 40 H 0.162 0.838 41 H 0.183 0.817 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 -29.315 -2.180 33.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.330 5.330 3 C 0.012 3.988 4 C 0.022 3.978 5 H 0.051 0.949 6 C -0.146 4.146 7 C -0.040 4.040 8 N -0.372 5.372 9 C -0.342 4.342 10 H 0.079 0.921 11 C -0.242 4.242 12 N -0.619 5.619 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.236 1.236 16 H -0.186 1.186 17 C 0.375 3.625 18 O -0.477 6.477 19 C -0.314 4.314 20 C -0.106 4.106 21 N -0.126 5.126 22 N -0.153 5.153 23 C -0.031 4.031 24 C 0.388 3.612 25 F -0.161 7.161 26 F -0.155 7.155 27 F -0.174 7.174 28 C -0.004 4.004 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.250 0.750 40 H 0.180 0.820 41 H 0.200 0.800 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.392 -30.099 -1.984 34.330 hybrid contribution 1.496 1.221 -0.262 1.949 sum -14.895 -28.878 -2.246 32.571 Atomic orbital electron populations 1.22772 0.77090 1.05569 1.03448 1.47560 1.08431 1.04368 1.72597 1.21264 0.96357 0.84661 0.96529 1.22669 0.94195 0.85654 0.95276 0.94914 1.23405 0.96220 0.96592 0.98380 1.23052 0.92611 0.99132 0.89240 1.46796 1.58171 1.08294 1.23944 1.18638 1.22175 1.01708 0.91648 0.92095 1.25756 0.98628 0.97596 1.02214 1.69888 1.44172 1.11411 1.36426 0.85742 0.77082 0.77577 0.81672 1.19356 1.23598 1.18632 1.17705 0.85985 0.83561 0.75222 1.90782 1.15675 1.87977 1.53256 1.20142 0.95355 0.93376 1.22567 1.25448 0.94962 0.94406 0.95770 1.77368 1.05413 1.06645 1.23197 1.48201 1.06228 1.06913 1.53980 1.23331 1.09927 0.74173 0.95669 1.20898 0.76443 0.78244 0.85666 1.93258 1.34914 1.92061 1.95862 1.93236 1.95811 1.31725 1.94695 1.93223 1.77221 1.91710 1.55241 1.23322 0.95485 0.87782 0.93792 0.90120 0.89170 0.87995 0.89082 0.94049 0.89041 0.87710 0.93943 0.92611 0.93088 0.75043 0.82001 0.79995 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 8.55 127.77 1.09 1.84 16 2 N -0.60 -15.46 2.81 -850.66 -2.39 -17.85 16 3 C 0.14 4.73 5.23 86.38 0.45 5.18 16 4 C 0.13 4.94 4.52 45.09 0.20 5.15 16 5 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 6 C -0.11 -3.18 7.39 31.25 0.23 -2.95 16 7 C 0.08 3.32 5.81 86.44 0.50 3.82 16 8 N -0.64 -31.01 3.30 -690.87 -2.28 -33.29 16 9 C -0.21 -12.57 10.96 84.03 0.92 -11.65 16 10 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 11 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 12 N -0.97 -63.17 13.97 21.65 0.30 -62.87 16 13 Si 0.95 47.89 25.18 68.60 1.73 49.62 16 14 H -0.27 -12.57 6.96 99.48 0.69 -11.88 16 15 H -0.31 -15.74 7.11 99.48 0.71 -15.04 16 16 H -0.26 -12.59 5.93 99.48 0.59 -11.99 16 17 C 0.58 16.89 7.62 86.66 0.66 17.55 16 18 O -0.60 -23.02 16.59 -4.03 -0.07 -23.09 16 19 C -0.30 -6.17 5.90 -20.15 -0.12 -6.28 16 20 C 0.08 1.31 9.80 85.65 0.84 2.15 16 21 N -0.31 -5.28 11.41 -56.28 -0.64 -5.92 16 22 N -0.37 -4.90 3.57 -346.30 -1.24 -6.13 16 23 C 0.09 0.45 6.49 86.38 0.56 1.01 16 24 C 0.44 4.94 3.28 71.98 0.24 5.18 16 25 F -0.18 -2.93 16.26 44.97 0.73 -2.20 16 26 F -0.17 -1.78 17.32 44.97 0.78 -1.00 16 27 F -0.19 -3.11 17.24 44.97 0.78 -2.34 16 28 C 0.15 2.29 11.28 84.28 0.95 3.24 16 29 H 0.08 0.85 7.57 -2.39 -0.02 0.83 16 30 H 0.09 1.15 6.81 -2.38 -0.02 1.13 16 31 H 0.10 1.05 4.90 -2.39 -0.01 1.04 16 32 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 33 H 0.04 1.75 7.58 -2.39 -0.02 1.73 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 2.59 7.12 -2.39 -0.02 2.57 16 36 H 0.04 1.71 6.47 -2.38 -0.02 1.69 16 37 H 0.06 2.21 7.27 -2.39 -0.02 2.20 16 38 H 0.26 16.12 8.31 -92.70 -0.77 15.35 16 39 H 0.23 2.26 4.71 -2.91 -0.01 2.25 16 40 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.18 -0.52 8.06 -2.39 -0.02 -0.54 16 42 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -87.00 357.34 5.64 -81.36 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 0.95 Total: 2.01 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 7.00 Total: 21.71 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.25 Total: -126.07 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 2.29 Total: -5.54 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.73 Total: 49.62 kcal Total: -87.00 5.64 -81.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.485 kcal (2) G-P(sol) polarization free energy of solvation -87.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds