Wall clock time and date at job start Wed Apr 1 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00298 * 2 1 4 4 C 1.52995 * 109.47272 * 276.23727 * 3 2 1 5 5 H 1.09006 * 112.96344 * 68.19970 * 4 3 2 6 6 C 1.53947 * 113.77001 * 296.52501 * 4 3 2 7 7 C 1.53945 * 86.29149 * 222.09017 * 6 4 3 8 8 N 1.47578 * 86.11520 * 23.60572 * 7 6 4 9 9 C 1.36934 * 134.49217 * 155.36181 * 8 7 6 10 10 H 1.08003 * 120.00630 * 185.87543 * 9 8 7 11 11 C 1.38811 * 119.99936 * 5.87454 * 9 8 7 12 12 N 1.31625 * 120.00151 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00272 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47101 * 59.99780 * 13 11 9 15 15 H 1.48498 * 109.47341 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47127 * 299.99949 * 13 11 9 17 17 C 1.34778 * 119.99779 * 179.97438 * 2 1 3 18 18 O 1.21601 * 120.00035 * 176.61649 * 17 2 1 19 19 C 1.47426 * 120.00019 * 356.61752 * 17 2 1 20 20 C 1.41294 * 126.41745 * 200.77951 * 19 17 2 21 21 N 1.30446 * 108.02133 * 179.85568 * 20 19 17 22 22 N 1.39931 * 108.90295 * 0.40765 * 21 20 19 23 23 C 1.46495 * 125.75818 * 179.73793 * 22 21 20 24 24 C 1.53001 * 109.47257 * 304.99954 * 23 22 21 25 25 F 1.39898 * 109.47033 * 59.99795 * 24 23 22 26 26 F 1.39897 * 109.47296 * 180.02562 * 24 23 22 27 27 F 1.39905 * 109.46982 * 300.00215 * 24 23 22 28 28 C 1.34260 * 108.48988 * 359.73714 * 22 21 20 29 29 H 1.08998 * 109.46900 * 94.65853 * 1 2 3 30 30 H 1.08993 * 109.47485 * 214.66473 * 1 2 3 31 31 H 1.09005 * 109.46978 * 334.66348 * 1 2 3 32 32 H 1.09002 * 109.47259 * 156.23691 * 3 2 1 33 33 H 1.08999 * 109.47459 * 36.23691 * 3 2 1 34 34 H 1.08997 * 113.73935 * 336.43453 * 6 4 3 35 35 H 1.09002 * 113.74180 * 107.63320 * 6 4 3 36 36 H 1.09000 * 113.77095 * 137.90825 * 7 6 4 37 37 H 1.09001 * 113.76466 * 269.19209 * 7 6 4 38 38 H 0.96994 * 119.99797 * 180.02562 * 12 11 9 39 39 H 1.07993 * 125.98485 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.47168 * 64.99612 * 23 22 21 41 41 H 1.08997 * 109.47378 * 185.00050 * 23 22 21 42 42 H 1.08003 * 126.29599 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3168 1.7887 -1.4339 5 1 1.3603 2.0989 -1.8547 6 6 3.1341 0.8707 -2.3609 7 6 3.7710 2.1598 -2.9107 8 7 3.3995 2.7739 -1.6212 9 6 3.8702 3.8327 -0.8916 10 1 3.4743 4.0280 0.0941 11 6 4.8564 4.6552 -1.4188 12 7 5.3394 4.4170 -2.6198 13 14 5.4992 6.0992 -0.4232 14 1 6.0874 5.6022 0.8466 15 1 6.5403 6.8144 -1.2039 16 1 4.3811 7.0285 -0.1204 17 6 2.1388 -1.1672 0.0005 18 8 3.3532 -1.1682 -0.0616 19 6 1.4036 -2.4428 0.0764 20 6 1.9257 -3.6885 0.4912 21 7 0.9670 -4.5706 0.4233 22 7 -0.1946 -3.9430 -0.0402 23 6 -1.4893 -4.5924 -0.2594 24 6 -1.3087 -5.7854 -1.2002 25 9 -0.4189 -6.7005 -0.6274 26 9 -2.5452 -6.4052 -1.4100 27 9 -0.7968 -5.3408 -2.4240 28 6 0.0775 -2.6451 -0.2501 29 1 -0.3633 -0.0835 -1.0243 30 1 -0.3634 -0.8452 0.5845 31 1 -0.3633 0.9289 0.4398 32 1 3.1937 1.1130 0.4141 33 1 1.6614 1.9978 0.6075 34 1 3.8357 0.2255 -1.8322 35 1 2.5288 0.3325 -3.0903 36 1 4.8470 2.0857 -3.0683 37 1 3.2436 2.5795 -3.7674 38 1 6.0287 4.9915 -2.9880 39 1 2.9400 -3.8769 0.8104 40 1 -1.8880 -4.9388 0.6941 41 1 -2.1825 -3.8795 -0.7057 42 1 -0.6139 -1.8967 -0.6082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:58 Heat of formation + Delta-G solvation = -25.708913 kcal Electronic energy + Delta-G solvation = -30585.628524 eV Core-core repulsion = 25769.862654 eV Total energy + Delta-G solvation = -4815.765869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.61107 -48.17684 -48.02649 -41.82031 -39.42624 -37.53148 -35.31170 -34.53861 -32.14104 -31.15868 -29.49765 -28.11957 -27.74231 -26.66554 -24.41567 -23.34512 -23.06853 -21.87480 -21.35874 -19.80309 -19.07713 -19.04632 -18.89552 -18.07481 -17.11835 -16.75548 -16.37394 -15.91733 -15.67829 -15.22071 -14.96193 -14.91414 -14.70968 -14.56276 -14.50217 -14.21595 -14.17630 -13.98541 -13.80074 -13.61982 -13.43742 -13.15958 -12.92274 -12.62393 -12.37941 -12.28511 -11.78024 -11.32694 -11.20141 -10.95335 -10.80896 -10.63327 -10.39949 -10.03468 -9.84862 -9.71561 -9.61838 -9.39193 -9.02692 -8.71949 -8.31906 -6.78102 -5.69162 -3.00867 1.05409 1.55067 1.96920 2.14322 3.07682 3.16293 3.27376 3.41642 3.43998 3.47960 3.49312 3.57966 4.03625 4.16711 4.28194 4.46040 4.53056 4.79923 4.94610 5.08184 5.23291 5.29719 5.30284 5.50014 5.52170 5.65149 5.94268 6.00466 6.11527 6.16738 6.19780 6.45100 6.62332 6.76129 6.83521 6.89202 7.13140 7.35889 7.54600 7.64333 7.68994 8.06824 8.44175 9.12082 9.78867 10.70486 11.48531 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.002184 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.660054 B =12814.545740 C =12962.258315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.604 5.604 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.039 0.961 6 C -0.158 4.158 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.587 3.413 18 O -0.525 6.525 19 C -0.264 4.264 20 C 0.116 3.884 21 N -0.289 5.289 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.445 3.555 25 F -0.163 7.163 26 F -0.177 7.177 27 F -0.176 7.176 28 C 0.090 3.910 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.199 0.801 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -19.987 5.347 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.338 5.338 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.375 3.625 18 O -0.401 6.401 19 C -0.279 4.279 20 C -0.073 4.073 21 N -0.107 5.107 22 N -0.161 5.161 23 C -0.030 4.030 24 C 0.389 3.611 25 F -0.144 7.144 26 F -0.158 7.158 27 F -0.157 7.157 28 C -0.057 4.057 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.216 0.784 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -19.603 -20.986 5.507 29.241 hybrid contribution 0.239 1.683 0.046 1.700 sum -19.364 -19.304 5.553 27.901 Atomic orbital electron populations 1.22231 0.81049 1.03380 1.01158 1.47595 1.06252 1.06418 1.73497 1.21864 0.97846 0.82011 0.98790 1.22512 0.92671 0.89909 0.92920 0.94325 1.23842 0.99624 0.97641 0.98564 1.22094 0.99345 0.86519 0.88091 1.45950 1.32931 1.33127 1.20599 1.18928 1.16536 1.02585 0.96998 0.90471 1.24799 0.99902 0.99095 0.96602 1.69832 1.30906 1.39955 1.15985 0.86248 0.78308 0.82416 0.79073 1.21082 1.21633 1.21288 1.17185 0.86682 0.82061 0.76581 1.90823 1.13117 1.86653 1.49529 1.20538 0.93614 0.96364 1.17337 1.24163 0.98996 0.88892 0.95252 1.77399 0.91105 1.20842 1.21367 1.48016 1.09128 1.07029 1.51897 1.22831 0.83782 0.94545 1.01832 1.20541 0.74485 0.85207 0.80827 1.93295 1.68495 1.68589 1.84030 1.93230 1.42940 1.84370 1.95274 1.93255 1.87250 1.89060 1.46165 1.23938 0.97375 0.86291 0.98093 0.92460 0.91000 0.90537 0.88710 0.91491 0.89349 0.94119 0.91689 0.95765 0.93659 0.78401 0.84839 0.83897 0.78417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.86 59.85 0.53 1.07 16 2 N -0.60 -8.26 2.77 -182.86 -0.51 -8.77 16 3 C 0.12 2.07 5.43 -4.05 -0.02 2.05 16 4 C 0.13 2.61 4.59 -66.87 -0.31 2.30 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -3.30 7.23 -25.80 -0.19 -3.49 16 7 C 0.16 4.12 7.38 -2.98 -0.02 4.09 16 8 N -0.60 -15.62 3.57 -170.77 -0.61 -16.23 16 9 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 10 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.03 11.54 55.49 0.64 -27.39 16 13 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.59 8.86 7.24 -12.52 -0.09 8.77 16 18 O -0.53 -10.20 14.75 5.28 0.08 -10.13 16 19 C -0.26 -3.07 5.81 -105.06 -0.61 -3.68 16 20 C 0.12 1.33 11.90 -16.98 -0.20 1.13 16 21 N -0.29 -3.16 11.41 30.86 0.35 -2.81 16 22 N -0.38 -3.00 3.57 -60.81 -0.22 -3.22 16 23 C 0.09 0.37 6.49 -4.04 -0.03 0.34 16 24 C 0.44 3.03 3.28 37.16 0.12 3.15 16 25 F -0.16 -1.54 16.26 2.25 0.04 -1.51 16 26 F -0.18 -1.10 17.32 2.25 0.04 -1.06 16 27 F -0.18 -1.59 17.24 2.25 0.04 -1.55 16 28 C 0.09 0.71 9.17 -16.56 -0.15 0.56 16 29 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 30 H 0.07 0.42 5.07 -51.93 -0.26 0.16 16 31 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 32 H 0.09 1.98 7.29 -51.93 -0.38 1.60 16 33 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.09 1.99 6.39 -51.93 -0.33 1.66 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.79 7.44 -51.93 -0.39 1.41 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.20 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.14 -0.01 8.06 -51.93 -0.42 -0.42 16 42 H 0.20 0.86 5.04 -52.48 -0.26 0.59 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -37.32 362.09 -5.85 -43.18 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.92 Total: -2.93 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.22 Total: 9.54 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.34 Total: -58.42 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.11 Total: -4.12 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.32 -5.85 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.467 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds