Wall clock time and date at job start Wed Apr 1 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00298 * 2 1 4 4 C 1.52995 * 109.47272 * 276.23727 * 3 2 1 5 5 H 1.09006 * 112.96344 * 68.19970 * 4 3 2 6 6 C 1.53947 * 113.77001 * 296.52501 * 4 3 2 7 7 C 1.53945 * 86.29149 * 222.09017 * 6 4 3 8 8 N 1.47578 * 86.11520 * 23.60572 * 7 6 4 9 9 C 1.36934 * 134.49217 * 155.36181 * 8 7 6 10 10 H 1.08003 * 120.00630 * 185.87543 * 9 8 7 11 11 C 1.38811 * 119.99936 * 5.87454 * 9 8 7 12 12 N 1.31625 * 120.00151 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00272 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47101 * 59.99780 * 13 11 9 15 15 H 1.48498 * 109.47341 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47127 * 299.99949 * 13 11 9 17 17 C 1.34778 * 119.99779 * 179.97438 * 2 1 3 18 18 O 1.21601 * 120.00035 * 176.61649 * 17 2 1 19 19 C 1.47426 * 120.00019 * 356.61752 * 17 2 1 20 20 C 1.41294 * 126.41745 * 200.77951 * 19 17 2 21 21 N 1.30446 * 108.02133 * 179.85568 * 20 19 17 22 22 N 1.39931 * 108.90295 * 0.40765 * 21 20 19 23 23 C 1.46495 * 125.75818 * 179.73793 * 22 21 20 24 24 C 1.53001 * 109.47257 * 304.99954 * 23 22 21 25 25 F 1.39898 * 109.47033 * 59.99795 * 24 23 22 26 26 F 1.39897 * 109.47296 * 180.02562 * 24 23 22 27 27 F 1.39905 * 109.46982 * 300.00215 * 24 23 22 28 28 C 1.34260 * 108.48988 * 359.73714 * 22 21 20 29 29 H 1.08998 * 109.46900 * 94.65853 * 1 2 3 30 30 H 1.08993 * 109.47485 * 214.66473 * 1 2 3 31 31 H 1.09005 * 109.46978 * 334.66348 * 1 2 3 32 32 H 1.09002 * 109.47259 * 156.23691 * 3 2 1 33 33 H 1.08999 * 109.47459 * 36.23691 * 3 2 1 34 34 H 1.08997 * 113.73935 * 336.43453 * 6 4 3 35 35 H 1.09002 * 113.74180 * 107.63320 * 6 4 3 36 36 H 1.09000 * 113.77095 * 137.90825 * 7 6 4 37 37 H 1.09001 * 113.76466 * 269.19209 * 7 6 4 38 38 H 0.96994 * 119.99797 * 180.02562 * 12 11 9 39 39 H 1.07993 * 125.98485 * 359.97438 * 20 19 17 40 40 H 1.09002 * 109.47168 * 64.99612 * 23 22 21 41 41 H 1.08997 * 109.47378 * 185.00050 * 23 22 21 42 42 H 1.08003 * 126.29599 * 180.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3168 1.7887 -1.4339 5 1 1.3603 2.0989 -1.8547 6 6 3.1341 0.8707 -2.3609 7 6 3.7710 2.1598 -2.9107 8 7 3.3995 2.7739 -1.6212 9 6 3.8702 3.8327 -0.8916 10 1 3.4743 4.0280 0.0941 11 6 4.8564 4.6552 -1.4188 12 7 5.3394 4.4170 -2.6198 13 14 5.4992 6.0992 -0.4232 14 1 6.0874 5.6022 0.8466 15 1 6.5403 6.8144 -1.2039 16 1 4.3811 7.0285 -0.1204 17 6 2.1388 -1.1672 0.0005 18 8 3.3532 -1.1682 -0.0616 19 6 1.4036 -2.4428 0.0764 20 6 1.9257 -3.6885 0.4912 21 7 0.9670 -4.5706 0.4233 22 7 -0.1946 -3.9430 -0.0402 23 6 -1.4893 -4.5924 -0.2594 24 6 -1.3087 -5.7854 -1.2002 25 9 -0.4189 -6.7005 -0.6274 26 9 -2.5452 -6.4052 -1.4100 27 9 -0.7968 -5.3408 -2.4240 28 6 0.0775 -2.6451 -0.2501 29 1 -0.3633 -0.0835 -1.0243 30 1 -0.3634 -0.8452 0.5845 31 1 -0.3633 0.9289 0.4398 32 1 3.1937 1.1130 0.4141 33 1 1.6614 1.9978 0.6075 34 1 3.8357 0.2255 -1.8322 35 1 2.5288 0.3325 -3.0903 36 1 4.8470 2.0857 -3.0683 37 1 3.2436 2.5795 -3.7674 38 1 6.0287 4.9915 -2.9880 39 1 2.9400 -3.8769 0.8104 40 1 -1.8880 -4.9388 0.6941 41 1 -2.1825 -3.8795 -0.7057 42 1 -0.6139 -1.8967 -0.6082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:57 Heat of formation + Delta-G solvation = -51.676533 kcal Electronic energy + Delta-G solvation = -30586.754564 eV Core-core repulsion = 25769.862654 eV Total energy + Delta-G solvation = -4816.891910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.15183 -48.70271 -48.62903 -42.56265 -40.66293 -39.20234 -36.46685 -35.09883 -34.21059 -32.09696 -30.20948 -29.80459 -29.20558 -27.60087 -25.29169 -24.96103 -24.51650 -22.85959 -22.14100 -20.88931 -20.59810 -19.62054 -19.58165 -18.72986 -18.60806 -17.78899 -17.47779 -17.11623 -16.70375 -16.56440 -16.07661 -15.77432 -15.58509 -15.51367 -15.25123 -15.06401 -15.04271 -14.80866 -14.77643 -14.76112 -14.36062 -14.12847 -13.83969 -13.72427 -13.64584 -13.31265 -13.15217 -12.90995 -12.68754 -12.50901 -12.44511 -12.26472 -11.88093 -11.79629 -11.56037 -11.19790 -10.86757 -10.80543 -10.71563 -9.83711 -9.53358 -8.83871 -7.86346 -5.18867 0.39292 1.01976 1.11941 1.45673 1.50305 1.55718 1.66063 2.08516 2.40027 2.53372 2.64261 2.90513 3.09092 3.34479 3.43897 3.50976 3.70561 3.89085 3.95985 4.03611 4.09157 4.30522 4.34474 4.38517 4.45578 4.52321 4.55845 4.72628 4.84388 4.90783 4.96374 5.08019 5.15793 5.27498 5.30583 5.55503 5.59409 5.65640 5.81545 5.98322 6.37296 6.58680 6.95025 7.35463 7.66038 8.63212 9.32011 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.002184 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.660054 B =12814.545740 C =12962.258315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.602 5.602 3 C 0.132 3.868 4 C 0.138 3.862 5 H 0.066 0.934 6 C -0.134 4.134 7 C 0.159 3.841 8 N -0.630 5.630 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.075 4.075 12 N -0.959 5.959 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.271 1.271 17 C 0.584 3.416 18 O -0.585 6.585 19 C -0.297 4.297 20 C 0.102 3.898 21 N -0.311 5.311 22 N -0.373 5.373 23 C 0.092 3.908 24 C 0.438 3.562 25 F -0.185 7.185 26 F -0.173 7.173 27 F -0.192 7.192 28 C 0.126 3.874 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.246 0.754 39 H 0.192 0.808 40 H 0.162 0.838 41 H 0.195 0.805 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.436 -20.171 6.317 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.333 5.333 3 C 0.008 3.992 4 C 0.031 3.969 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.033 3.967 8 N -0.356 5.356 9 C -0.354 4.354 10 H 0.107 0.893 11 C -0.267 4.267 12 N -0.609 5.609 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.225 1.225 16 H -0.197 1.197 17 C 0.374 3.626 18 O -0.466 6.466 19 C -0.311 4.311 20 C -0.087 4.087 21 N -0.130 5.130 22 N -0.153 5.153 23 C -0.030 4.030 24 C 0.383 3.617 25 F -0.166 7.166 26 F -0.154 7.154 27 F -0.174 7.174 28 C -0.023 4.023 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.209 0.791 40 H 0.180 0.820 41 H 0.212 0.788 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -24.098 -21.223 6.509 32.764 hybrid contribution 1.459 1.585 -0.279 2.173 sum -22.639 -19.637 6.230 30.610 Atomic orbital electron populations 1.22671 0.77150 1.05514 1.03573 1.47587 1.08496 1.04398 1.72840 1.21394 0.96891 0.84276 0.96685 1.22686 0.92053 0.87483 0.94664 0.91704 1.23536 0.99156 0.95821 0.98691 1.22020 0.97249 0.89144 0.88278 1.46296 1.35108 1.33452 1.20784 1.19396 1.15973 1.02426 0.97598 0.89337 1.25691 1.00860 1.02271 0.97896 1.70041 1.31800 1.41116 1.17919 0.85158 0.77667 0.79147 0.77426 1.20481 1.22465 1.19714 1.17687 0.86195 0.83344 0.75365 1.90793 1.15906 1.87566 1.52349 1.20244 0.95374 0.94657 1.20847 1.24183 0.99291 0.89403 0.95774 1.77365 0.92149 1.21319 1.22187 1.48292 1.09600 1.07200 1.50171 1.23415 0.82344 0.94364 1.02878 1.21034 0.74022 0.85876 0.80727 1.93256 1.69410 1.69671 1.84275 1.93237 1.42446 1.84492 1.95273 1.93225 1.87559 1.89150 1.47426 1.24435 0.96160 0.86801 0.94855 0.89792 0.88139 0.89225 0.92986 0.89552 0.91473 0.90969 0.95693 0.96133 0.94511 0.79141 0.82044 0.78767 0.74002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 8.86 127.77 1.13 1.71 16 2 N -0.60 -14.98 2.77 -850.71 -2.36 -17.33 16 3 C 0.13 4.48 5.43 86.38 0.47 4.95 16 4 C 0.14 5.43 4.59 45.09 0.21 5.63 16 5 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 6 C -0.13 -5.57 7.23 31.25 0.23 -5.34 16 7 C 0.16 8.18 7.38 86.48 0.64 8.82 16 8 N -0.63 -33.16 3.57 -694.20 -2.48 -35.64 16 9 C -0.23 -12.82 10.51 84.03 0.88 -11.94 16 10 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 11 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 12 N -0.96 -60.67 11.54 21.65 0.25 -60.42 16 13 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.58 17.22 7.24 86.66 0.63 17.85 16 18 O -0.59 -23.82 14.75 -4.03 -0.06 -23.88 16 19 C -0.30 -6.37 5.81 -20.15 -0.12 -6.49 16 20 C 0.10 2.32 11.90 85.65 1.02 3.34 16 21 N -0.31 -6.36 11.41 -56.28 -0.64 -7.00 16 22 N -0.37 -4.43 3.57 -346.30 -1.24 -5.67 16 23 C 0.09 0.25 6.49 86.38 0.56 0.81 16 24 C 0.44 4.72 3.28 71.98 0.24 4.96 16 25 F -0.18 -3.26 16.26 44.97 0.73 -2.53 16 26 F -0.17 -1.66 17.32 44.97 0.78 -0.88 16 27 F -0.19 -3.02 17.24 44.97 0.78 -2.25 16 28 C 0.13 1.41 9.17 84.28 0.77 2.18 16 29 H 0.08 0.56 7.51 -2.39 -0.02 0.54 16 30 H 0.10 0.56 5.07 -2.39 -0.01 0.54 16 31 H 0.09 0.85 7.91 -2.38 -0.02 0.83 16 32 H 0.05 2.23 7.29 -2.39 -0.02 2.21 16 33 H 0.09 2.58 7.96 -2.39 -0.02 2.56 16 34 H 0.07 3.13 6.39 -2.39 -0.02 3.11 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.02 1.45 7.44 -2.39 -0.02 1.43 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.19 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.20 -1.44 8.06 -2.39 -0.02 -1.46 16 42 H 0.24 0.33 5.04 -2.91 -0.01 0.31 16 Total: -1.00 -88.77 362.09 5.99 -82.78 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.07 Total: 1.29 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.12 Total: 22.55 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.46 Total: -126.06 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 2.28 Total: -5.65 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -88.77 5.99 -82.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -88.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds