Wall clock time and date at job start Wed Apr 1 2020 04:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 108.57830 * 2 1 4 4 O 1.42097 * 108.57854 * 228.97058 * 2 1 3 5 5 C 1.81403 * 101.92059 * 114.48729 * 2 1 3 6 6 C 1.53009 * 109.47048 * 179.97438 * 5 2 1 7 7 N 1.46893 * 109.47135 * 179.97438 * 6 5 2 8 8 C 1.48054 * 111.00150 * 170.00056 * 7 6 5 9 9 C 1.53398 * 86.02491 * 222.77488 * 8 7 6 10 10 C 1.48062 * 110.99861 * 70.54686 * 7 6 5 11 11 C 1.52563 * 113.80509 * 268.71612 * 9 8 7 12 12 N 1.46271 * 109.56650 * 273.97854 * 11 9 8 13 13 C 1.46503 * 118.71402 * 163.92105 * 12 11 9 14 14 C 1.52998 * 109.47013 * 90.00177 * 13 12 11 15 15 C 1.50699 * 109.47172 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00195 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47163 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47194 * 119.99731 * 19 17 15 22 22 H 1.48491 * 109.47455 * 240.00052 * 19 17 15 23 23 C 1.33712 * 122.56694 * 343.92231 * 12 11 9 24 24 O 1.21282 * 118.37931 * 183.25932 * 23 12 11 25 25 C 1.50163 * 123.24130 * 3.23823 * 23 12 11 26 26 O 1.42681 * 113.76711 * 138.11412 * 9 8 7 27 27 H 1.09000 * 109.47164 * 305.51374 * 1 2 3 28 28 H 1.08988 * 109.47215 * 65.51417 * 1 2 3 29 29 H 1.09005 * 109.46967 * 185.51761 * 1 2 3 30 30 H 1.08998 * 109.47435 * 59.99897 * 5 2 1 31 31 H 1.09000 * 109.46970 * 299.99334 * 5 2 1 32 32 H 1.09007 * 109.46813 * 59.99661 * 6 5 2 33 33 H 1.08997 * 109.46838 * 300.00077 * 6 5 2 34 34 H 1.08993 * 113.78984 * 108.49572 * 8 7 6 35 35 H 1.09002 * 113.78491 * 337.05011 * 8 7 6 36 36 H 1.09001 * 113.78482 * 22.95195 * 10 7 6 37 37 H 1.09007 * 113.78819 * 251.50526 * 10 7 6 38 38 H 1.08997 * 109.45597 * 34.01159 * 11 9 8 39 39 H 1.09004 * 109.44959 * 153.94964 * 11 9 8 40 40 H 1.08996 * 109.46694 * 210.00179 * 13 12 11 41 41 H 1.09000 * 109.47017 * 330.00267 * 13 12 11 42 42 H 1.09004 * 109.47037 * 300.00074 * 14 13 12 43 43 H 1.08996 * 109.47281 * 59.99695 * 14 13 12 44 44 H 0.96995 * 120.00011 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.35284 * 222.12682 * 25 23 12 46 46 H 1.08998 * 109.35259 * 102.56378 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8196 1.7979 7 7 4.0090 -1.4148 3.1062 8 6 5.4503 -1.7324 3.2232 9 6 4.9984 -3.0516 3.8625 10 6 3.6675 -2.8553 3.1258 11 6 4.8770 -2.9896 5.3820 12 7 6.1780 -3.2691 5.9893 13 6 6.3877 -2.9194 7.3964 14 6 5.9959 -4.1051 8.2804 15 6 6.2110 -3.7453 9.7279 16 1 6.5897 -2.7687 9.9910 17 6 5.9253 -4.6631 10.7162 18 7 5.4655 -5.8529 10.3957 19 14 6.1926 -4.2173 12.5104 20 1 6.7135 -2.8297 12.6034 21 1 4.9032 -4.3114 13.2413 22 1 7.1728 -5.1559 13.1130 23 6 7.1834 -3.8312 5.3102 24 8 8.2100 -4.0840 5.9044 25 6 7.1039 -4.1654 3.8484 26 8 5.7391 -4.1882 3.4205 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9351 29 1 -0.3633 -1.0230 0.0988 30 1 1.7610 -1.7369 1.6665 31 1 1.7611 -0.1170 2.4043 32 1 4.1336 0.1816 1.7465 33 1 4.1328 -1.4384 1.0089 34 1 5.9912 -1.0761 3.9048 35 1 5.9520 -1.8582 2.2637 36 1 3.6404 -3.3142 2.1374 37 1 2.7916 -3.0914 3.7301 38 1 4.5436 -1.9953 5.6793 39 1 4.1523 -3.7309 5.7188 40 1 7.4381 -2.6772 7.5579 41 1 5.7724 -2.0567 7.6520 42 1 4.9454 -4.3473 8.1188 43 1 6.6111 -4.9678 8.0248 44 1 5.2642 -6.4985 11.0911 45 1 7.5526 -5.1438 3.6766 46 1 7.6492 -3.4148 3.2761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273811708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:47 Heat of formation + Delta-G solvation = -96.634672 kcal Electronic energy + Delta-G solvation = -28761.778787 eV Core-core repulsion = 24587.945287 eV Total energy + Delta-G solvation = -4173.833501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49109 -39.39096 -37.47129 -37.00740 -36.51559 -35.46016 -33.40755 -32.92759 -30.29613 -30.11842 -29.12160 -27.26149 -26.60357 -25.59063 -24.55072 -22.67701 -21.48472 -20.13067 -19.37439 -18.25213 -17.91136 -17.39651 -16.84874 -16.68063 -16.54641 -16.18021 -15.89379 -15.83308 -15.55272 -14.73208 -14.63060 -14.44111 -14.13336 -14.00622 -13.78446 -13.75571 -13.48598 -13.15134 -12.86270 -12.78419 -12.57841 -12.49950 -12.45767 -12.42365 -12.07828 -11.84066 -11.60960 -11.44699 -11.32243 -11.16113 -11.00453 -10.91771 -10.65785 -10.28166 -9.90912 -9.85600 -9.41950 -9.33429 -9.01488 -8.36530 -8.13954 -6.01438 -4.04538 -0.57456 2.19354 2.84997 2.95674 3.10259 3.30891 3.36456 3.39016 3.42901 3.47354 3.52966 3.90280 4.09370 4.13234 4.24210 4.26346 4.44138 4.46065 4.56439 4.74178 4.81623 4.84028 4.98826 5.09413 5.11449 5.14608 5.19080 5.32274 5.34848 5.44792 5.46795 5.53603 5.71299 5.77947 6.05958 6.38461 6.48389 6.62364 6.79747 6.86486 7.57763 7.70118 7.90614 7.98804 8.33877 8.48539 9.02216 9.59293 11.10110 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002141 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.241114 B =13073.135624 C =13971.368818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.422 3.578 3 O -0.938 6.938 4 O -0.939 6.939 5 C -0.610 4.610 6 C 0.033 3.967 7 N -0.462 5.462 8 C -0.021 4.021 9 C 0.069 3.931 10 C 0.020 3.980 11 C 0.117 3.883 12 N -0.597 5.597 13 C 0.114 3.886 14 C 0.014 3.986 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.479 3.521 24 O -0.538 6.538 25 C 0.052 3.948 26 O -0.357 6.357 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.128 0.872 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 10.966 -23.378 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.604 3.396 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.739 4.739 6 C -0.096 4.096 7 N -0.186 5.186 8 C -0.150 4.150 9 C 0.028 3.972 10 C -0.108 4.108 11 C -0.007 4.007 12 N -0.330 5.330 13 C -0.006 4.006 14 C -0.024 4.024 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.265 3.735 24 O -0.415 6.415 25 C -0.027 4.027 26 O -0.275 6.275 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.146 0.854 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.552 11.285 -23.312 27.967 hybrid contribution -0.249 -0.530 1.139 1.281 sum -10.801 10.755 -22.173 26.907 Atomic orbital electron populations 1.30250 1.26435 1.11763 1.11965 1.07784 0.78492 0.75834 0.77528 1.93618 1.79021 1.34395 1.86428 1.93616 1.79068 1.67033 1.53905 1.30396 1.05416 1.14581 1.23524 1.22302 0.91611 1.02793 0.92939 1.68638 1.09035 1.13262 1.27655 1.24652 0.91440 0.97018 1.01892 1.23316 0.93696 0.85753 0.94402 1.24124 0.96859 0.88679 1.01162 1.21657 0.86525 1.03346 0.89168 1.47699 1.11763 1.60130 1.13365 1.21962 1.01860 0.99816 0.76969 1.19355 0.96723 0.92926 0.93377 1.21119 1.43741 1.00002 0.90944 0.92470 1.25009 0.95169 0.94938 0.99260 1.69987 1.44741 1.05506 1.32988 0.86496 0.77766 0.78561 0.84919 1.19676 1.21028 1.20971 1.20625 0.84198 0.78669 0.90000 1.90768 1.29737 1.52340 1.68690 1.22775 0.83754 1.05115 0.91051 1.88101 1.21621 1.43006 1.74748 0.85134 0.85168 0.85204 0.84804 0.83761 0.88491 0.92004 0.87969 0.89610 0.89201 0.87395 0.88634 0.90123 0.90643 0.91652 0.96672 0.95922 0.93020 0.85389 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.09 10.62 101.05 1.07 -0.01 16 2 S 2.42 11.75 5.36 -107.50 -0.58 11.18 16 3 O -0.94 -8.33 18.10 -57.83 -1.05 -9.38 16 4 O -0.94 -8.26 18.10 -57.83 -1.05 -9.31 16 5 C -0.61 -2.37 5.87 37.16 0.22 -2.15 16 6 C 0.03 0.22 4.82 -3.82 -0.02 0.20 16 7 N -0.46 -3.84 6.15 -240.94 -1.48 -5.32 16 8 C -0.02 -0.20 6.67 -2.99 -0.02 -0.22 16 9 C 0.07 0.77 1.21 -90.51 -0.11 0.66 16 10 C 0.02 0.17 6.51 -2.99 -0.02 0.15 16 11 C 0.12 1.59 5.79 -4.39 -0.03 1.57 16 12 N -0.60 -10.59 2.83 -174.67 -0.50 -11.09 16 13 C 0.11 2.41 5.20 -4.04 -0.02 2.39 16 14 C 0.01 0.37 5.29 -27.88 -0.15 0.22 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.48 8.67 7.57 -11.72 -0.09 8.58 16 24 O -0.54 -12.11 16.33 5.56 0.09 -12.02 16 25 C 0.05 0.68 6.67 35.75 0.24 0.92 16 26 O -0.36 -4.52 10.66 -35.23 -0.38 -4.90 16 27 H 0.13 0.02 8.14 -51.92 -0.42 -0.40 16 28 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.13 0.01 8.14 -51.92 -0.42 -0.41 16 30 H 0.13 0.28 7.54 -51.93 -0.39 -0.11 16 31 H 0.14 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 34 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.09 0.70 7.79 -51.93 -0.40 0.29 16 36 H 0.09 0.65 7.79 -51.93 -0.40 0.25 16 37 H 0.11 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.70 7.29 -51.93 -0.38 1.32 16 41 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.08 0.89 7.92 -51.93 -0.41 0.47 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -40.55 389.87 -10.07 -50.62 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -7.40 Total: -4.74 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 0.67 Total: -1.24 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -1.24 Total: -42.89 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.38 Total: -35.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 11.75 SS G_CDS: -0.58 Total: 11.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.55 -10.07 -50.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273811708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.012 kcal (2) G-P(sol) polarization free energy of solvation -40.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds